seqeralabs/seqera-kit issues and pull requests

#201 - Add Studios support

Issue - State: open - Opened by ejseqera 8 days ago

#200 - ci: fix revision used for rnaseq in tower actions

Pull Request - State: closed - Opened by ejseqera 27 days ago

#199 - Release v0.5.2

Pull Request - State: closed - Opened by ejseqera 27 days ago

#198 - Add global overwrite option

Pull Request - State: closed - Opened by ejseqera 27 days ago

#197 - fix: orgs and teams overwrite behaviour when resolving env vars

Pull Request - State: closed - Opened by ejseqera 27 days ago

#196 - Clean up traceback returned from info command error

Pull Request - State: closed - Opened by ejseqera about 1 month ago

#195 - fix: catch and handle all non-zero exit codes

Pull Request - State: closed - Opened by ejseqera about 1 month ago - 1 comment

#194 - `seqerakit --info` always returns exit code 0

Issue - State: closed - Opened by adamrtalbot about 1 month ago - 1 comment

#193 - seqerakit info generating traceback if TOWER_ACCESS_TOKEN is not provided

Issue - State: closed - Opened by drpatelh about 1 month ago - 1 comment

#192 - Release v0.5.1

Pull Request - State: closed - Opened by ejseqera about 1 month ago

#191 - Fix typo in docs

Pull Request - State: closed - Opened by ejseqera about 1 month ago

#190 - Vague error with invalid TOWER_API_ENDPOINT

Issue - State: closed - Opened by drpatelh about 1 month ago - 5 comments

#189 - Document use of environment variables in the README.md

Pull Request - State: closed - Opened by adamrtalbot about 1 month ago

#188 - fix: parsing of vars in input file with existing env

Pull Request - State: closed - Opened by ejseqera about 2 months ago

#187 - fix: support for multiple cli args provided via cli

Pull Request - State: closed - Opened by ejseqera about 2 months ago

#186 - Alt find yaml files recursively

Pull Request - State: closed - Opened by ejseqera about 2 months ago

#185 - Add support to recursively find YAML in directories

Issue - State: closed - Opened by ejseqera about 2 months ago - 1 comment

#184 - Recursively find yaml files in directories

Pull Request - State: closed - Opened by adamrtalbot 2 months ago

#183 - fix: Correctly catches and raises errors from tw cli

Pull Request - State: closed - Opened by adamrtalbot 2 months ago - 1 comment

#182 - Use params file for environment variables

Pull Request - State: closed - Opened by adamrtalbot 2 months ago - 2 comments

#181 - Draft: add support for a variables file as input for templating

Pull Request - State: closed - Opened by ejseqera 2 months ago - 2 comments

#180 - Refactor CLI to use Typer

Pull Request - State: open - Opened by edmundmiller 2 months ago

#179 - Switch to pyproject.toml and UV

Pull Request - State: open - Opened by edmundmiller 2 months ago

#178 - Error exit code hidden (always exit 0)

Issue - State: closed - Opened by adamrtalbot 2 months ago - 2 comments

#177 - ci: update CE YAML and replace fields with env vars

Pull Request - State: closed - Opened by ejseqera 2 months ago

#176 - ci: update CI to include AWS batch CE from source

Pull Request - State: closed - Opened by ejseqera 2 months ago

#175 - Release v0.5.0

Pull Request - State: closed - Opened by ejseqera 2 months ago - 1 comment

#174 - Fix support for user/personal workspaces

Pull Request - State: closed - Opened by ejseqera 2 months ago

#173 - FIx handling of resource creation error when emitting JSON output

Pull Request - State: closed - Opened by ejseqera 3 months ago

#172 - fix: handling for overwrite class without json output

Pull Request - State: closed - Opened by ejseqera 3 months ago

#171 - fix: handling for API vars and escaped vars

Pull Request - State: closed - Opened by ejseqera 3 months ago

#170 - `overwrite: true` and `--json` conflict with each other

Issue - State: closed - Opened by adamrtalbot 4 months ago - 1 comment

#169 - Handle `TW_AGENT_WORK`

Issue - State: closed - Opened by multimeric 4 months ago - 1 comment

#168 - Terminates when workspace is already defined

Issue - State: open - Opened by multimeric 4 months ago - 2 comments

#167 - Static typing support

Issue - State: closed - Opened by multimeric 5 months ago - 2 comments

#166 - Seqerakit raises ResourceCreationError too easily

Issue - State: closed - Opened by robsyme 5 months ago - 1 comment

#165 - Adding a new participant raises an error because user is not found in workspace

Issue - State: closed - Opened by adamrtalbot 5 months ago - 2 comments

#164 - fix: add correct handling for windows env vars

Pull Request - State: closed - Opened by ejseqera 6 months ago

#163 - Support Windows Powershell environment variables

Issue - State: closed - Opened by adamrtalbot 6 months ago - 1 comment

#162 - return python objects instead of text

Issue - State: closed - Opened by sstrong99 6 months ago - 5 comments

#161 - seqerakit does not work in user workspaces

Issue - State: closed - Opened by ejseqera 6 months ago - 2 comments

#160 - Release v0.4.9

Pull Request - State: closed - Opened by ejseqera 7 months ago

#159 - docs: add docs for targets flag

Pull Request - State: closed - Opened by ejseqera 7 months ago

#158 - Add targets flag to specify resources for creation in input YAML

Pull Request - State: closed - Opened by ejseqera 7 months ago

#157 - Report success and failures better in seqerakit

Pull Request - State: closed - Opened by ejseqera 7 months ago

#156 - fix: improve logic to respect cli and dryrun flags with info

Pull Request - State: closed - Opened by ejseqera 7 months ago - 1 comment

#155 - fix: remove defaults channel from install and build

Pull Request - State: closed - Opened by ejseqera 7 months ago

#154 - fix: add handling for empty strings in key-value pairs of yaml

Pull Request - State: closed - Opened by ejseqera 7 months ago

#153 - add code commit credentials to examples

Pull Request - State: closed - Opened by schaluva 7 months ago - 1 comment

#152 - [Feature] Report if success or failure better

Issue - State: closed - Opened by adamrtalbot 8 months ago - 1 comment
Labels: enhancement

#151 - [Bug] seqerakit --info does not respect the --cli flag

Issue - State: closed - Opened by adamrtalbot 8 months ago - 1 comment
Labels: bug

#150 - Make seqera-kit installable without using conda 'defaults' channel

Issue - State: closed - Opened by stevekm 8 months ago - 2 comments

#149 - [Bug] Adding a pipeline with empty config via seqerakit doesn't fail

Issue - State: closed - Opened by FloWuenne 9 months ago

#148 - Add a flag to specify targets for resources to create

Issue - State: closed - Opened by ejseqera 10 months ago - 1 comment

#147 - Release v0.4.8

Pull Request - State: closed - Opened by ejseqera 10 months ago

#146 - feat(SeqeraPlatform): seqerakit can write JSON to stdout for detailed records

Pull Request - State: closed - Opened by adamrtalbot 10 months ago - 6 comments

#145 - fix: type error when using params dict in yaml

Pull Request - State: closed - Opened by ejseqera 10 months ago

#144 - TypeError: unhashable type 'dict' when globbing over files with params dict

Issue - State: closed - Opened by ejseqera 10 months ago - 1 comment
Labels: bug

#143 - Merge logo change from dev

Pull Request - State: closed - Opened by ejseqera 10 months ago

#142 - fix path to logo

Pull Request - State: closed - Opened by maxulysse 10 months ago

#141 - Adding a logo

Pull Request - State: closed - Opened by maxulysse 10 months ago

#140 - Release v0.4.7

Pull Request - State: closed - Opened by ejseqera 10 months ago

#139 - docs: update README links, version for release in setup

Pull Request - State: closed - Opened by ejseqera 10 months ago

#138 - Update YMLs in CI/CD

Pull Request - State: closed - Opened by ejseqera 10 months ago

#137 - fix: generate json data for workspaces with org argument for deletion

Pull Request - State: closed - Opened by ejseqera 10 months ago

#136 - fix: catch errors more reliably

Pull Request - State: closed - Opened by adamrtalbot 10 months ago

#135 - Ignores duplicate label error from platform CLI

Issue - State: closed - Opened by adamrtalbot 10 months ago - 1 comment

#129 - Update e2e GH actions

Issue - State: closed - Opened by ejseqera 11 months ago - 1 comment

#126 - [bug] wrong duplicate detection

Issue - State: open - Opened by alvaromartmart 12 months ago - 2 comments

#121 - feat: add support for stdin to cli

Pull Request - State: closed - Opened by ejseqera 12 months ago

#114 - Adding option to pass in yaml via stdin

Issue - State: closed - Opened by max-l-weaver about 1 year ago - 1 comment

#112 - Draft: Add feature to emit YAMLs of existing entities

Pull Request - State: open - Opened by ejseqera about 1 year ago

#105 - Create output file when generating resources with CLI

Issue - State: open - Opened by adamrtalbot about 1 year ago - 5 comments

#100 - fix: boolean value parsing for keys

Pull Request - State: closed - Opened by ejseqera about 1 year ago

#99 - Remove boolean flags entirely if `False`

Issue - State: closed - Opened by ejseqera about 1 year ago - 1 comment

#98 - Release v0.4.4

Pull Request - State: closed - Opened by ejseqera about 1 year ago

#97 - fix: fix env var parsing in params block with params-file

Pull Request - State: closed - Opened by ejseqera about 1 year ago

#96 - Release v0.4.3

Pull Request - State: closed - Opened by ejseqera about 1 year ago

#95 - docs: add details on yaml config options, new info arg

Pull Request - State: closed - Opened by ejseqera about 1 year ago

#94 - Protect main branch against direct push?

Issue - State: closed - Opened by marcodelapierre about 1 year ago - 1 comment

#93 - update python-testing : execute on PR too

Pull Request - State: closed - Opened by marcodelapierre about 1 year ago - 1 comment

#92 - Add docs for seqerakit specific yaml options

Issue - State: closed - Opened by ejseqera about 1 year ago - 1 comment
Labels: documentation

#91 - Allow direct passing of dictionaries to seqera kit python module

Issue - State: open - Opened by grantn5 about 1 year ago
Labels: enhancement

#90 - feat: support params and params-file keys

Pull Request - State: closed - Opened by ejseqera about 1 year ago
Labels: enhancement