Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / seqcode/pegr issues and pull requests

#331 - Data download

Issue - State: open - Opened by WilliamKMLai 4 months ago - 3 comments
Labels: enhancement

#330 - API workflow command

Issue - State: open - Opened by WilliamKMLai 4 months ago
Labels: enhancement

#329 - Modify Reporting Template to contain 'analysis modules'

Issue - State: open - Opened by WilliamKMLai 4 months ago
Labels: enhancement, display enhancement, database

#328 - Change pipeline concat from '-' to '_'

Issue - State: closed - Opened by WilliamKMLai 4 months ago
Labels: display enhancement

#327 - Sample Tag Archive

Issue - State: closed - Opened by WilliamKMLai 4 months ago
Labels: display enhancement

#326 - Adding workflow to PEGR

Issue - State: closed - Opened by WilliamKMLai 4 months ago - 2 comments
Labels: display enhancement

#325 - Date not updating with API changes to sequencing run

Issue - State: closed - Opened by WilliamKMLai 4 months ago
Labels: display enhancement

#324 - Remove the +/- btn from print version

Issue - State: closed - Opened by dshao 5 months ago

#323 - Dynamically change strand of composite plot to match weblogo

Issue - State: closed - Opened by WilliamKMLai 5 months ago - 2 comments
Labels: display enhancement

#322 - Move legend for TSS plot to bottom

Issue - State: closed - Opened by WilliamKMLai 5 months ago
Labels: display enhancement

#321 - Inconsistent display of y-axis for composite plots

Issue - State: closed - Opened by WilliamKMLai 6 months ago
Labels: bug

#320 - Update composite plots generation

Issue - State: closed - Opened by WilliamKMLai 6 months ago
Labels: display enhancement

#319 - Add additional metadata to project page

Issue - State: closed - Opened by WilliamKMLai 6 months ago
Labels: display enhancement

#318 - api to update requestedGenomes and add requestedPipelines to Sample

Pull Request - State: closed - Opened by dshao 8 months ago

#317 - Add "Status" field to sample search

Issue - State: closed - Opened by owlang 10 months ago

#316 - Update Sample Status to become modifiable

Issue - State: closed - Opened by WilliamKMLai 10 months ago
Labels: display enhancement

#315 - Update Sample panel

Issue - State: closed - Opened by WilliamKMLai 10 months ago
Labels: display enhancement

#314 - Inconsistent TSS plot generation

Issue - State: closed - Opened by WilliamKMLai 10 months ago
Labels: bug

#313 - Support for AVITI Run Manifest

Issue - State: closed - Opened by WilliamKMLai 12 months ago - 3 comments
Labels: enhancement

#312 - Edit sample strain shows antibody edit page instead

Issue - State: closed - Opened by owlang 12 months ago
Labels: bug

#311 - Slow when showing a large number of samples

Issue - State: closed - Opened by dshao about 1 year ago

#310 - PEGR api does not work with OpenSSL

Issue - State: closed - Opened by jcha40 about 1 year ago - 3 comments

#309 - update and bug fixes

Pull Request - State: closed - Opened by dshao about 1 year ago

#307 - Update Sequencing/Bioinformatics tables

Issue - State: closed - Opened by WilliamKMLai about 1 year ago - 2 comments
Labels: display enhancement

#306 - Update Run status marker on Sample page to Sample status

Issue - State: closed - Opened by WilliamKMLai about 1 year ago
Labels: display enhancement

#305 - Update to Sample page

Issue - State: closed - Opened by WilliamKMLai about 1 year ago - 1 comment
Labels: display enhancement

#304 - Link to Run Analysis from Run Info needed

Issue - State: closed - Opened by WilliamKMLai about 1 year ago - 1 comment
Labels: display enhancement

#303 - Update Mapping Statistics and Paired End Statistics

Issue - State: closed - Opened by owlang about 1 year ago

#302 - Add support for plot title in feature from #259

Issue - State: closed - Opened by jcha40 about 1 year ago

#301 - Run details page is missing + "show all columns" button

Issue - State: closed - Opened by owlang over 1 year ago

#300 - Add Run Details link to Sequencing Run Page

Issue - State: closed - Opened by owlang over 1 year ago

#299 - Dev

Pull Request - State: closed - Opened by dshao over 1 year ago

#298 - Add column in on Sample page for BigWig file downloads

Issue - State: closed - Opened by owlang over 1 year ago - 1 comment

#297 - Add support for SVG format for motif weblogos

Issue - State: closed - Opened by jcha40 over 1 year ago - 1 comment

#296 - rerun PEGR analysis pipeline

Issue - State: open - Opened by dshao over 1 year ago - 2 comments

#295 - Add a tab in "Quality Control Analysis" for the TSS pileup

Issue - State: closed - Opened by jcha40 over 1 year ago

#294 - Make insert size histogram more prominent

Issue - State: closed - Opened by jcha40 over 1 year ago - 4 comments

#293 - Malformed MEME html file

Issue - State: closed - Opened by jcha40 over 1 year ago - 1 comment

#292 - Cancel removing user from project does not cancel operation

Issue - State: closed - Opened by owlang over 1 year ago
Labels: bug

#291 - Adding “Audit” Tags for each sample id

Issue - State: open - Opened by owlang over 1 year ago

#290 - Target ids include species info

Issue - State: open - Opened by owlang over 1 year ago

#289 - Add alias support for Targets

Issue - State: open - Opened by owlang over 1 year ago

#288 - Export Samples from Search to CSV

Issue - State: closed - Opened by owlang over 1 year ago - 1 comment
Labels: enhancement, display enhancement

#287 - Export Samples from Project to CSV

Issue - State: closed - Opened by owlang over 1 year ago
Labels: enhancement, display enhancement

#286 - Add samples to a project from a sample search

Issue - State: open - Opened by owlang over 1 year ago

#285 - PEGR report can not be published

Issue - State: closed - Opened by WilliamKMLai over 1 year ago
Labels: bug

#284 - Error updating Target identify

Issue - State: closed - Opened by WilliamKMLai over 1 year ago
Labels: bug

#283 - CILogon upgrade

Issue - State: closed - Opened by WilliamKMLai over 1 year ago
Labels: enhancement, discussion, documentation

#282 - Update Sample search

Issue - State: closed - Opened by WilliamKMLai over 1 year ago - 2 comments
Labels: display enhancement

#281 - Project Merge not working

Issue - State: closed - Opened by WilliamKMLai over 1 year ago
Labels: bug

#280 - Create Genome under Admin Bug

Issue - State: closed - Opened by WilliamKMLai over 1 year ago
Labels: bug

#279 - Sequence Index Search

Issue - State: closed - Opened by WilliamKMLai over 1 year ago
Labels: display enhancement

#278 - Error updating metadata in batchEdit

Issue - State: closed - Opened by WilliamKMLai almost 2 years ago - 1 comment
Labels: bug

#277 - Barcode upload issue

Issue - State: closed - Opened by WilliamKMLai almost 2 years ago - 1 comment
Labels: bug

#276 - Export other admin table as CSV

Issue - State: closed - Opened by dshao almost 2 years ago

#275 - Add ability to create linkouts to project pages

Issue - State: closed - Opened by owlang almost 2 years ago

#274 - Add sample statistics to Project pages

Issue - State: closed - Opened by owlang almost 2 years ago - 1 comment

#273 - Allow sample query API to take in a list of sample IDs

Issue - State: closed - Opened by jcha40 almost 2 years ago

#272 - Export Target Table as CSV in Admin

Issue - State: closed - Opened by WilliamKMLai almost 2 years ago - 1 comment
Labels: display enhancement, database

#271 - API update

Issue - State: closed - Opened by WilliamKMLai almost 2 years ago - 2 comments
Labels: database

#270 - Change default download filename to include PEGR ID

Issue - State: closed - Opened by jcha40 about 2 years ago - 1 comment
Labels: display enhancement

#269 - service report group by project

Issue - State: closed - Opened by dshao about 2 years ago

#268 - API access by roles

Issue - State: closed - Opened by dshao about 2 years ago - 1 comment

#267 - Sequence Index bulk addition

Issue - State: closed - Opened by WilliamKMLai about 2 years ago
Labels: enhancement

#266 - Sequence Index modification

Issue - State: closed - Opened by WilliamKMLai about 2 years ago
Labels: bug, display enhancement

#265 - Add project query to API

Issue - State: closed - Opened by jcha40 about 2 years ago

#264 - Re-structure the PDF report on PEGR

Issue - State: closed - Opened by WilliamKMLai about 2 years ago
Labels: display enhancement

#263 - Clicking replicate Set 1 in project gives an error

Issue - State: closed - Opened by jcha40 over 2 years ago - 6 comments

#262 - Queue sheet upload with Bio/Tech/Seq Replicates

Issue - State: closed - Opened by amg246 over 2 years ago - 1 comment

#261 - POST command for overwriting "notes" field in sampleID

Issue - State: closed - Opened by owlang over 2 years ago

#260 - Create command-line API for fixing sample metadata

Issue - State: closed - Opened by owlang over 2 years ago - 1 comment

#259 - New reporting feature

Issue - State: closed - Opened by WilliamKMLai over 2 years ago - 5 comments
Labels: enhancement, display enhancement

#258 - Contribution Guidelines

Issue - State: closed - Opened by WilliamKMLai over 2 years ago
Labels: discussion

#257 - Code of Conduct

Issue - State: closed - Opened by WilliamKMLai over 2 years ago - 1 comment
Labels: discussion

#256 - submit sequencing request

Issue - State: open - Opened by dshao almost 3 years ago - 2 comments
Labels: enhancement

#255 - Add hg19,hg38 as a reference genome choice

Issue - State: closed - Opened by amg246 almost 3 years ago - 4 comments
Labels: help wanted, discussion

#254 - enable adding sequenced cohorts into projects

Issue - State: closed - Opened by grettadarmstrong almost 3 years ago - 2 comments
Labels: discussion, documentation

#253 - Allow multiple Sample IDs in the side filter on the "Sample" page

Issue - State: closed - Opened by grettadarmstrong almost 3 years ago - 1 comment
Labels: enhancement

#252 - Juno sync to Thanos

Issue - State: closed - Opened by WilliamKMLai almost 3 years ago - 1 comment
Labels: database, documentation

#251 - Search by user name

Issue - State: closed - Opened by amg246 almost 3 years ago - 1 comment
Labels: enhancement

#250 - need ability to edit landing page and include PEGR logo

Issue - State: closed - Opened by grettadarmstrong almost 3 years ago
Labels: display enhancement

#249 - Error with Ascl1 target

Issue - State: closed - Opened by amg246 almost 3 years ago

#248 - Some updates about SSL certificate added to PEGR and needs to be added to the wiki page

Issue - State: closed - Opened by AliNemat almost 3 years ago - 1 comment
Labels: documentation

#247 - PEGR "Report" function in Admin panel needs enhancements

Issue - State: closed - Opened by grettadarmstrong almost 3 years ago
Labels: enhancement, display enhancement

#246 - Update issue templates

Pull Request - State: closed - Opened by grettadarmstrong about 3 years ago

#245 - Given name to unzipped "runInfofile" file needs an update

Issue - State: closed - Opened by AliNemat about 3 years ago
Labels: enhancement

#244 - Adding a new Species in the Admin panel does NOT populate the drop-down list for a new Genome build

Issue - State: closed - Opened by grettadarmstrong about 3 years ago - 1 comment
Labels: display enhancement

#243 - Unknown Index - change path

Issue - State: open - Opened by WilliamKMLai about 3 years ago
Labels: enhancement

#242 - GET/SET of run status and runInfo file based on RAW sequence directory name

Issue - State: closed - Opened by AliNemat about 3 years ago
Labels: enhancement

#241 - Add API POST/GET/UPDATE to Sequencing Run Panel

Issue - State: closed - Opened by WilliamKMLai about 3 years ago
Labels: display enhancement

#240 - API call to check/set Run Status

Issue - State: closed - Opened by WilliamKMLai over 3 years ago - 1 comment
Labels: enhancement, database

#239 - API capability for downloading runInfoNNN.tar.gz file

Issue - State: closed - Opened by AliNemat over 3 years ago - 1 comment
Labels: enhancement

#236 - Printing labels from PEGR - new DYMO labels and printing just barcodes

Issue - State: open - Opened by res336 over 3 years ago - 1 comment

#224 - Queue Form upload Error Correction

Issue - State: open - Opened by WilliamKMLai over 3 years ago - 1 comment
Labels: enhancement

#215 - Incorrect GUI buttons shown: Guest user as a Guest role for a project *appears* to be able to delete sequencing run

Issue - State: closed - Opened by grettadarmstrong over 3 years ago - 1 comment
Labels: display enhancement, discussion

#191 - can the 'Status' field for 'SEX' become a 'notes' field?

Issue - State: closed - Opened by grettadarmstrong almost 4 years ago
Labels: display enhancement, discussion

#189 - Can we multi-select and merge "Organization" as we can other Admin lists?

Issue - State: closed - Opened by grettadarmstrong almost 4 years ago
Labels: enhancement, display enhancement

#132 - PEGR renders a separate cegr_config file for each (genome_build, workflow_id) pair

Issue - State: closed - Opened by dshao almost 5 years ago - 1 comment