Ecosyste.ms: Issues

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GitHub / seqcode/cegr-galaxy issues and pull requests

#48 - Fixes for meme_fimo_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#48 - Fixes for meme_fimo_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#47 - Add the tools/cegr_statistics/meme_fimo_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#47 - Add the tools/cegr_statistics/meme_fimo_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#46 - Update the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#46 - Update the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#45 - Generate stats on meme text, not xml

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#45 - Generate stats on meme text, not xml

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#44 - Fix for tools/cegr_statistics/meme_meme_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#44 - Fix for tools/cegr_statistics/meme_meme_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#43 - Add the meme_meme_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#43 - Add the meme_meme_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#41 - Add the repeatmasker_wrapper_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#41 - Add the repeatmasker_wrapper_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#40 - Add the extract_genomic_dna_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#40 - Add the extract_genomic_dna_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#39 - Add the pe_histogram_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#39 - Add the pe_histogram_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#38 - Add the samtool_filter2_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#38 - Add the samtool_filter2_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#37 - Upgrade fimo to version 4.11.0.3 in the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#37 - Upgrade fimo to version 4.11.0.3 in the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#36 - Fix for updating RepeatMasker tool parameters

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#36 - Fix for updating RepeatMasker tool parameters

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#35 - Update the Galaxy job config on hera

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#35 - Update the Galaxy job config on hera

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#34 - Add production versions of exported ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#34 - Add production versions of exported ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#33 - Fix for mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#33 - Fix for mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#32 - Add the cwpair2_output_stats tool to the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#32 - Add the cwpair2_output_stats tool to the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#31 - The cwpair2_output_stats tool must support dataset collections

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#31 - The cwpair2_output_stats tool must support dataset collections

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#30 - Add the cwpair2_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#30 - Add the cwpair2_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#29 - Fixes for getting the job in the statistics reports tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#29 - Fixes for getting the job in the statistics reports tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#28 - Update the ChIP-exo workflows to include all current tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#28 - Update the ChIP-exo workflows to include all current tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#27 - Update the payload to include the historyId

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#27 - Update the payload to include the historyId

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#26 - Enhance statistics tools to

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#26 - Enhance statistics tools to

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#25 - Enhance pre-processing pipeleing to work with Galaxy 16.04

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#25 - Enhance pre-processing pipeleing to work with Galaxy 16.04

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#24 - Add the genetrack_output_stats PEGR API tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#24 - Add the genetrack_output_stats PEGR API tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#23 - Add the fastqc_output_stats tool to the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#23 - Add the fastqc_output_stats tool to the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#22 - UI fix for fastqc_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#22 - UI fix for fastqc_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#21 - Add the fastqc_output_stats PEGR API tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#21 - Add the fastqc_output_stats PEGR API tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#20 - Add the RepeatMasker tool to the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#20 - Add the RepeatMasker tool to the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#19 - Improved handling of the PEGR response

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#19 - Improved handling of the PEGR response

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#18 - Clean up bam_to_scidx_output_stats

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#18 - Clean up bam_to_scidx_output_stats

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#17 - Fix http responses that include errors

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#17 - Fix http responses that include errors

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#15 - Fix tool id for bam_to_scidx_output_stats

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#15 - Fix tool id for bam_to_scidx_output_stats

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#14 - Fix bam_to_scidx_output_stats

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#14 - Fix bam_to_scidx_output_stats

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#12 - Add the first pass of the bam_to_scidx_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#12 - Add the first pass of the bam_to_scidx_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#10 - Various statistics fixes

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#10 - Various statistics fixes

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#8 - Fixes and enhancements for the mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#8 - Fixes and enhancements for the mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#7 - Finish first pass of the mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#6 - Update payload layout based on discussion this morning

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#5 - Enhance the mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#4 - Add the payload layout for the statistics reports

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#3 - Fixes for the _copy_raw_data and bcl2fastq steps

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#2 - Fix for using bcl2fastq on ICS clusters

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago