Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / seqcode/cegr-galaxy issues and pull requests

#100 - Actually store the pe_histogram statistics after calculating them

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#100 - Actually store the pe_histogram statistics after calculating them

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#99 - Add statistics for pe_histogram tabular output

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#99 - Add statistics for pe_histogram tabular output

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#98 - Import the time module for all stats tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#98 - Import the time module for all stats tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#97 - Add current patches for release 16.04

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#97 - Add current patches for release 16.04

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#96 - Copy the html subdirectory instead of the Reports directory

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#96 - Copy the html subdirectory instead of the Reports directory

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#95 - Fix for the workflows step

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#95 - Fix for the workflows step

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#94 - End the title_line

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#94 - End the title_line

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#92 - Clobber destination files when copying a directory and be verbose

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#92 - Clobber destination files when copying a directory and be verbose

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#91 - Move Reports into run subdirectory

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#91 - Move Reports into run subdirectory

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#90 - Fix calculation for uniquely mapped reads per Bongsoo

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#90 - Fix calculation for uniquely mapped reads per Bongsoo

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#89 - Archive the SampleSheet even if there is an error

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#89 - Archive the SampleSheet even if there is an error

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#88 - Do not clobber existing files when copying a directory of files

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#88 - Do not clobber existing files when copying a directory of files

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#87 - Fix bcl2fastq step

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#87 - Fix bcl2fastq step

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#86 - Fix mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#86 - Fix mark_duplicates_bam_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#85 - Fix fasta_nucleotide_color_plot_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#85 - Fix fasta_nucleotide_color_plot_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#84 - Update payload doc to reflect tool params now being sent as a dict

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#84 - Update payload doc to reflect tool params now being sent as a dict

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#83 - Send tool parameters as a dict instead of a string

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#83 - Send tool parameters as a dict instead of a string

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#82 - Fix for meme_meme_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#82 - Fix for meme_meme_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#81 - Fix fastqc_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#81 - Fix fastqc_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#79 - Update the exported workflows to version running in Galaxy-cegr

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#79 - Update the exported workflows to version running in Galaxy-cegr

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#78 - Fix help text for the genetrack_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#78 - Fix help text for the genetrack_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#75 - Add the singletons entry to the statistics dictionary for PEGR

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#75 - Add the singletons entry to the statistics dictionary for PEGR

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#74 - Add the HTML meme output to the statisitcs for PEGR

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#74 - Add the HTML meme output to the statisitcs for PEGR

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#73 - Fix typos in several statistics tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#73 - Fix typos in several statistics tools

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#72 - Include the read in the statistics for the FastQC report tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#72 - Include the read in the statistics for the FastQC report tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#71 - Make adapter_dimer_count a float with precision 2

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#71 - Make adapter_dimer_count a float with precision 2

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#69 - Calculate adapterDimerCount in the fastqc_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#69 - Calculate adapterDimerCount in the fastqc_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#67 - Update the PEGR API payload definition

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#67 - Update the PEGR API payload definition

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#66 - Eliminate the split_motifs tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#66 - Eliminate the split_motifs tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#65 - Always send lists of datasets and statistics to PEGR.

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#65 - Always send lists of datasets and statistics to PEGR.

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#63 - Add the split_motifs tool as a work-around to the Fimo issue

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#63 - Add the split_motifs tool as a work-around to the Fimo issue

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#62 - Enhance the fastqc_output_stats tool to include the text file URI.

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#62 - Enhance the fastqc_output_stats tool to include the text file URI.

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#61 - Enhance exception handling in the send_data_to_galaxy step.

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#61 - Enhance exception handling in the send_data_to_galaxy step.

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#60 - Make values floats when calculating genome coverage

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#60 - Make values floats when calculating genome coverage

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#59 - Set float precision to 6 for genomeCoverage

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#59 - Set float precision to 6 for genomeCoverage

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#58 - Fix for generating statistics on an empty file

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#58 - Fix for generating statistics on an empty file

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#56 - Fix statistics tools for tools that produce multiple outputs

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#56 - Fix statistics tools for tools that produce multiple outputs

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#55 - Update the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#55 - Update the ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#54 - Add the tag_pileup_frequency_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#54 - Add the tag_pileup_frequency_output_stats tool

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#52 - Enhance the pe_histogram_output_stats tool to use both outputs

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#52 - Enhance the pe_histogram_output_stats tool to use both outputs

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#51 - Update ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago

#51 - Update ChIP-exo workflows

Pull Request - State: closed - Opened by gregvonkuster over 8 years ago