seqan/seqan issues and pull requests

#2431 - [FIX] Fixes bad memory access when updating the positions for the loc…

Pull Request - State: closed - Opened by rrahn over 4 years ago - 3 comments

#2430 - [FIX] Aligned allocation for newer macos platforms.

Pull Request - State: closed - Opened by rrahn over 4 years ago

#2429 - Efficiency of vectorization in local alignment

Issue - State: closed - Opened by roguzsel over 4 years ago - 11 comments

#2428 - Add TSV file support and a demo

Pull Request - State: open - Opened by weese over 4 years ago

#2427 - Errors with tutorial on reading BAM files - does not compile

Issue - State: closed - Opened by aleighbrown over 4 years ago - 2 comments

#2426 - maron simulator --fragment-size-model uniform

Issue - State: closed - Opened by Freequilibrium over 4 years ago - 2 comments

#2425 - runtime_error: Illumina read is too long

Issue - State: closed - Opened by Freequilibrium over 4 years ago - 4 comments

#2424 - external_split_merge.cpp:109 Assertion failed

Issue - State: closed - Opened by Freequilibrium over 4 years ago - 4 comments

#2423 - [FIX] Added *.fas file extension to FASTA files

Pull Request - State: closed - Opened by cpockrandt almost 5 years ago - 6 comments

#2422 - homebrew/science is been deprecated - manual on Seqan website still advises install with brew install homebrew/science/seqan

Issue - State: open - Opened by aleighbrown almost 5 years ago - 4 comments

#2421 - [FIX] Fixes #2417: Difference between SIMD and serial local alignment

Pull Request - State: closed - Opened by rrahn almost 5 years ago - 1 comment

#2420 - [FIX] don't rely on deprecated match.qLength

Pull Request - State: closed - Opened by h-2 almost 5 years ago - 1 comment

#2419 - Core Dump (Segmentation fault)

Issue - State: closed - Opened by agakrawczyk almost 5 years ago - 2 comments

#2418 - Small fixes for Lambda

Pull Request - State: closed - Opened by h-2 almost 5 years ago - 1 comment

#2417 - Difference between SIMD and serial local alignment

Issue - State: closed - Opened by sarahet almost 5 years ago - 6 comments

#2416 - [FIX] some template args were missing

Pull Request - State: closed - Opened by h-2 almost 5 years ago

#2415 - [FIX] deploy to target branch.

Pull Request - State: closed - Opened by rrahn almost 5 years ago

#2414 - [INFRA] Add printing target branch.

Pull Request - State: closed - Opened by rrahn almost 5 years ago

#2413 - [INFRA] Deploy into target branch.

Pull Request - State: closed - Opened by rrahn almost 5 years ago

#2412 - [INFRA] Deploy docu on pushes to master/develop.

Pull Request - State: closed - Opened by rrahn almost 5 years ago

#2411 - output of flexbar as fastq or fastqgz, input is illumina fastq.gz, can not open or read

Issue - State: open - Opened by WendyZhangYing almost 5 years ago - 2 comments

#2410 - [FIX] da padding-view

Pull Request - State: closed - Opened by h-2 almost 5 years ago - 6 comments

#2409 - [INFRA] Migrate internal infrastructure to python3.

Pull Request - State: closed - Opened by rrahn almost 5 years ago - 9 comments

#2407 - [INFRA] Add github workflow to deploy dox

Pull Request - State: closed - Opened by rrahn almost 5 years ago - 3 comments

#2404 - [DOC] Add documentation entries for the execution policy interface of…

Pull Request - State: closed - Opened by rrahn almost 5 years ago - 3 comments
Labels: dox

#2403 - jumpToRegion() failed to retrieve records when posBeg is less than the first record.

Issue - State: closed - Opened by lijinbio almost 5 years ago - 4 comments

#2402 - Document the intrerfaces for the parallel and vectorised alignments.

Issue - State: closed - Opened by rrahn almost 5 years ago - 1 comment
Labels: dox, task

#2400 - Somehow CI breaks to build the manual because of missing citation Rausch2008 in bibfile

Issue - State: closed - Opened by rrahn about 5 years ago - 1 comment
Labels: bug, dox

#2397 - Global alignment is wrong in some cases (Score is correct)

Issue - State: closed - Opened by svnbgnk about 5 years ago - 3 comments
Labels: invalid

#2393 - Yara Index Memory alignment issue

Issue - State: open - Opened by svnbgnk about 5 years ago - 1 comment
Labels: bug

#2392 - [DOC] Vcf header 'FORMAT' description

Pull Request - State: closed - Opened by bricoletc about 5 years ago - 10 comments

#2391 - MyersBitVector (Banded) returns wrong Score in some cases.

Issue - State: open - Opened by svnbgnk about 5 years ago - 4 comments
Labels: bug

#2390 - Add note about SeqAn3

Pull Request - State: closed - Opened by h-2 over 5 years ago

#2389 - [FIX] warnings on gcc9

Pull Request - State: closed - Opened by eseiler over 5 years ago - 4 comments

#2388 - BamFileIn#viewRecords does not show in the docs.

Issue - State: closed - Opened by rrahn over 5 years ago - 4 comments

#2384 - [DOC] Typo fix in alphabet size of Iupac

Pull Request - State: closed - Opened by cpockrandt over 5 years ago - 2 comments
Labels: dox

#2380 - Options of globalAlignmentScore

Issue - State: closed - Opened by Lolasdasdasd over 5 years ago - 3 comments
Labels: question

#2368 - arm64, alignment problem causes a failure to build from source

Issue - State: open - Opened by mr-c almost 6 years ago - 3 comments

#2367 - [FIX] Check for jinja2 when building dox

Pull Request - State: closed - Opened by eseiler almost 6 years ago

#2354 - [FIX] Some typos and adding include modules.

Pull Request - State: closed - Opened by eseiler about 6 years ago
Labels: ready to merge

#2342 - Added conditional In Text Search for Optimum Search Schemes (Hamming Distance)

Pull Request - State: open - Opened by svnbgnk about 6 years ago - 1 comment

#2327 - Fix behavior of jumpToRegion with linear indices containing 0.

Pull Request - State: open - Opened by serosko over 6 years ago - 3 comments

#2320 - Maximum number of contigs in a simulation

Issue - State: open - Opened by teng-gao over 6 years ago - 5 comments

#2312 - [DOX] Fix documentation of writeRecords function for Graphs.

Pull Request - State: closed - Opened by smehringer over 6 years ago
Labels: dox

#2294 - [DOC] Changed DfsPreorderIterator to DfsPreorder

Pull Request - State: closed - Opened by s-cooper18 over 6 years ago - 5 comments
Labels: dox, ready to merge

#2114 - Mason2 methylation simulation

Issue - State: open - Opened by fritzsedlazeck about 7 years ago - 13 comments
Labels: question

#433 - SVN not working in Ubuntu Studio 14.04

Issue - State: closed - Opened by davidmccreavy over 10 years ago - 9 comments

#314 - [FIX] Disabling Mason2 in Visual Studio <10

Pull Request - State: closed - Opened by holtgrewe over 10 years ago

#172 - Fix for GKN version generation after move to git

Pull Request - State: closed - Opened by aiche almost 11 years ago

GitHub / seqan/seqan issues and pull requests