Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / seqan/seqan issues and pull requests

#2532 - Check k-mer counts

Pull Request - State: closed - Opened by eaasna 10 days ago

#2531 - [INFRA] Fix Sanitizer

Pull Request - State: closed - Opened by eseiler about 2 months ago

#2530 - [INFRA] Remove SEQAN_GH_ACTIONS_BUILD

Pull Request - State: closed - Opened by eseiler about 2 months ago

#2529 - [FIX] heap-use-after-free

Pull Request - State: closed - Opened by eseiler about 2 months ago

#2528 - [FIX] heap-use-after-free

Pull Request - State: closed - Opened by eseiler 2 months ago

#2527 - [INFRA] Apply Debian patches

Pull Request - State: closed - Opened by eseiler 2 months ago

#2526 - [FIX,INFRA] Sanitizer builds

Pull Request - State: closed - Opened by eseiler 2 months ago

#2525 - [FIX] Segfault in GlobalAlignment

Pull Request - State: closed - Opened by eseiler 2 months ago

#2523 - [INFRA] Update CI

Pull Request - State: closed - Opened by eseiler 2 months ago

#2522 - [MISC] Expand gcc workaround

Pull Request - State: closed - Opened by eseiler 3 months ago

#2521 - [FIX] mason

Pull Request - State: closed - Opened by eseiler 3 months ago

#2520 - mason2 assertion failures

Issue - State: closed - Opened by marcelm 3 months ago - 13 comments

#2518 - Job getting killed without a error message

Issue - State: closed - Opened by vinegang 5 months ago - 3 comments

#2517 - Error occured while running mason simulator

Issue - State: closed - Opened by sahilrishav2 6 months ago - 1 comment

#2515 - [FIX] Missing SQ header in BAM output

Pull Request - State: closed - Opened by eseiler 6 months ago

#2514 - [FIX] mason_variator: Fix StructuralVariantRecord::endPosition() for deletions.

Pull Request - State: closed - Opened by smehringer 6 months ago - 2 comments

#2512 - question about parallel alignment of different seqence

Issue - State: closed - Opened by metaphysicser 7 months ago - 2 comments

#2511 - mason_variator Aborted (core dumped)

Issue - State: closed - Opened by amiliehj 7 months ago - 1 comment

#2510 - [DOC] Update Changelog, Readme, and links

Pull Request - State: closed - Opened by eseiler 8 months ago

#2509 - [DOC] Update changelog

Pull Request - State: closed - Opened by eseiler 8 months ago

#2508 - [DOC] Add caveats section for mason

Pull Request - State: closed - Opened by eseiler 8 months ago

#2507 - [FIX] CMake: Use execute_process

Pull Request - State: closed - Opened by eseiler 8 months ago

#2506 - [MISC] Update copyright year

Pull Request - State: closed - Opened by eseiler 8 months ago

#2504 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#2503 - Bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#2502 - [INFRA] Update CI

Pull Request - State: closed - Opened by eseiler 12 months ago

#2501 - [INFRA] Fix CMake warnings

Pull Request - State: closed - Opened by eseiler about 1 year ago

#2500 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2499 - README.md with dead links

Issue - State: closed - Opened by Austernpilz over 1 year ago - 2 comments

#2498 - [INFRA] Simplify find package, add seqan::seqan2

Pull Request - State: closed - Opened by eseiler over 1 year ago

#2497 - [INFRA] Rename namespace to seqan2

Pull Request - State: closed - Opened by eseiler over 1 year ago

#2496 - [DOC] master/develop -> main

Pull Request - State: closed - Opened by eseiler over 1 year ago

#2495 - Bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#2494 - Bump Pendect/action-rsyncer from 1.1.0 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#2493 - [MISC] Merge develop into main

Pull Request - State: closed - Opened by eseiler over 1 year ago

#2492 - fix: rename master to main

Pull Request - State: closed - Opened by SGSSGene over 1 year ago

#2491 - Doc/adjust readme and compilers

Pull Request - State: closed - Opened by SGSSGene over 1 year ago - 1 comment

#2490 - mason_simulator Segmentation fault (core dumped)

Issue - State: closed - Opened by MarcelloMalpighi over 1 year ago - 12 comments

#2489 - Question: is it possible to create a psl like output from razers3 ?

Issue - State: closed - Opened by Aphrix over 1 year ago - 2 comments

#2488 - [INFRA] dddoc

Pull Request - State: closed - Opened by eseiler almost 2 years ago

#2487 - BUG: simulation might produce 'N' even this is not intended

Issue - State: open - Opened by SGSSGene almost 2 years ago - 1 comment
Labels: bug

#2485 - Lets see what happens if we remove this weird define

Pull Request - State: closed - Opened by smehringer about 2 years ago - 2 comments

#2484 - [FIX] vcf writter wrote out the wrong information

Pull Request - State: open - Opened by SGSSGene about 2 years ago

#2483 - [FIX] add missing definition of static variables

Pull Request - State: closed - Opened by SGSSGene about 2 years ago

#2482 - [DOC] Add documentation on mason2 file handle problem.

Pull Request - State: closed - Opened by smehringer over 2 years ago

#2481 - [FIX] FMIndex/approximate using short search schemes

Pull Request - State: closed - Opened by SGSSGene over 2 years ago

#2480 - [INFRA] CI: harden compiler flags

Pull Request - State: closed - Opened by eseiler over 2 years ago

#2479 - [INFRA] Update CI

Pull Request - State: closed - Opened by eseiler over 2 years ago

#2478 - [FIX] gcc12: maybe unitialised

Pull Request - State: closed - Opened by eseiler over 2 years ago

#2477 - [FIX] -Waddress

Pull Request - State: closed - Opened by eseiler over 2 years ago

#2476 - [FIX] mason2 vcf parsing

Pull Request - State: closed - Opened by eseiler over 2 years ago

#2475 - Error Mason2 parsing VCF file v4.2 with multiple formats in the `FORMAT` field

Issue - State: closed - Opened by maxrossi91 over 2 years ago - 10 comments

#2474 - razers3: cigar.h:510 Assertion failed

Issue - State: closed - Opened by pipecedeno almost 3 years ago - 2 comments
Labels: bug

#2473 - [INFRA] Build blast and yara on MSVC

Pull Request - State: closed - Opened by eseiler almost 3 years ago

#2472 - [MISC] small fixes

Pull Request - State: closed - Opened by eseiler almost 3 years ago

#2471 - [MISC] Update copyright year

Pull Request - State: closed - Opened by eseiler almost 3 years ago

#2470 - [MISC] prepare release

Pull Request - State: closed - Opened by eseiler almost 3 years ago

#2469 - Release 2.5

Issue - State: open - Opened by smehringer almost 3 years ago - 1 comment

#2468 - Build failure on Visual Studio 2019

Issue - State: open - Opened by mns-csharp almost 3 years ago - 15 comments

#2467 - [INFRA] Update ICC

Pull Request - State: closed - Opened by eseiler about 3 years ago

#2466 - [INFRA] Use seqan3 script to install clang on macOS

Pull Request - State: closed - Opened by eseiler about 3 years ago

#2465 - [INFRA] Update CI

Pull Request - State: closed - Opened by eseiler about 3 years ago

#2464 - [INFRA] gcc11

Pull Request - State: closed - Opened by eseiler about 3 years ago

#2463 - mason2 could not open file

Issue - State: closed - Opened by ChristosMatzoros over 3 years ago - 6 comments
Labels: ready to tackle

#2462 - [FIX,INFRA] Use up-to-date homebrew on macOS

Pull Request - State: closed - Opened by eseiler over 3 years ago

#2461 - Fix/vcf io cache accessors

Pull Request - State: closed - Opened by rrahn over 3 years ago

#2460 - [FIX] app_test script

Pull Request - State: closed - Opened by eseiler over 3 years ago

#2459 - [FIX] real copy constructor

Pull Request - State: closed - Opened by h-2 over 3 years ago

#2458 - www.seqan.de unreachable

Issue - State: closed - Opened by james-d-mitchell over 3 years ago - 5 comments

#2457 - [MISC] Use 64 bit integers for contig lengths

Pull Request - State: closed - Opened by eseiler over 3 years ago

#2456 - [INFRA] Add icc on Linux to CI

Pull Request - State: closed - Opened by eseiler over 3 years ago

#2455 - [INFRA] increase CI timeout to 180 minutes

Pull Request - State: closed - Opened by eseiler over 3 years ago

#2454 - [FIX] Actually use command line option seed in simulateGenome

Pull Request - State: closed - Opened by eseiler over 3 years ago - 4 comments

#2453 - [FIX] Actually use command line option seed in simulateGenome.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#2452 - mason_genome ignores --seed option

Issue - State: closed - Opened by feldroop over 3 years ago - 3 comments
Labels: bug

#2451 - Latest RazerS build fails, new gcc version not accepted

Issue - State: closed - Opened by jbsysadmin over 3 years ago - 3 comments

#2450 - [INFRA] Intel compiler support

Pull Request - State: closed - Opened by eseiler almost 4 years ago - 4 comments

#2449 - Rework seqan config.cmake

Pull Request - State: closed - Opened by marehr almost 4 years ago

#2448 - [INFRA] new compilers

Pull Request - State: closed - Opened by eseiler almost 4 years ago - 11 comments

#2447 - [FIX] wrong results when searching with horspool

Pull Request - State: closed - Opened by eseiler almost 4 years ago

#2445 - [INFRA] make CI more robust

Pull Request - State: closed - Opened by eseiler almost 4 years ago - 1 comment

#2444 - [FIX] newest sphinxcontrib.bibtex does not work

Pull Request - State: closed - Opened by eseiler almost 4 years ago

#2443 - [FIX] Path of environment.yml

Pull Request - State: closed - Opened by eseiler almost 4 years ago

#2442 - [FIX] Documentation Badge

Pull Request - State: closed - Opened by eseiler almost 4 years ago - 2 comments

#2441 - [FIX] out of bounds access

Pull Request - State: closed - Opened by eseiler almost 4 years ago

#2440 - [FIX] documentation deploy action

Pull Request - State: closed - Opened by eseiler almost 4 years ago - 2 comments

#2439 - [INFRA] Windows CI

Pull Request - State: closed - Opened by eseiler almost 4 years ago - 1 comment

#2438 - [FIX] T-Coffee file ending for MUM segments

Pull Request - State: closed - Opened by joergi-w almost 4 years ago - 3 comments
Labels: bug

#2437 - [INFRA] Use GitHub actions

Pull Request - State: closed - Opened by eseiler about 4 years ago - 7 comments

#2436 - Silence bogus gcc10 warning

Pull Request - State: closed - Opened by eseiler about 4 years ago - 1 comment

#2435 - Fixes for cpp20

Pull Request - State: closed - Opened by eseiler about 4 years ago - 11 comments

#2434 - Reading sequence records in chunks

Issue - State: open - Opened by mhassankhan90 about 4 years ago - 6 comments

#2433 - [FIX] UB reverse on packed strings

Pull Request - State: closed - Opened by cpockrandt over 4 years ago - 2 comments

#2432 - character conversion to dna4 is misbehaving

Issue - State: closed - Opened by alphahmed over 4 years ago - 1 comment