Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / seqan/needle issues and pull requests

#100 - Add hibf_lib and chopper

Issue - State: open - Opened by MitraDarja over 3 years ago

#99 - [FEATURE] Add exclude option. Rename genome file into include file.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#98 - [DOC] Correct github repo link.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#97 - [TEST] Delete DATA for all tests after using it.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#97 - [TEST] Delete DATA for all tests after using it.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#96 - [TEST] Add everywhere at least two levels to test estimate.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#96 - [TEST] Add everywhere at least two levels to test estimate.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#95 - [TODO] Change genome mask to include and exclude option

Issue - State: closed - Opened by MitraDarja over 3 years ago

#95 - [TODO] Change genome mask to include and exclude option

Issue - State: closed - Opened by MitraDarja over 3 years ago

#94 - Better test structure

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#94 - Better test structure

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#93 - [TODO] Entangle api tests and check validity of cli tests

Issue - State: closed - Opened by MitraDarja over 3 years ago

#93 - [TODO] Entangle api tests and check validity of cli tests

Issue - State: closed - Opened by MitraDarja over 3 years ago

#92 - Normalization estimate

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#92 - Normalization estimate

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#91 - [BUG] Multithread results sometimes in error

Issue - State: closed - Opened by MitraDarja over 3 years ago - 1 comment
Labels: bug

#91 - [BUG] Multithread results sometimes in error

Issue - State: closed - Opened by MitraDarja over 3 years ago - 1 comment
Labels: bug

#90 - Upgradeseqan3

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#90 - Upgradeseqan3

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#89 - [FEATURE] Parallelize one file.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#89 - [FEATURE] Parallelize one file.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#88 - [DOC] Update Readme.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#88 - [DOC] Update Readme.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#87 - Improve2

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#87 - Improve2

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#86 - Fpr

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#86 - Fpr

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#85 - [FIX] Read all counts, also when paired.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#85 - [FIX] Read all counts, also when paired.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#84 - Improve minimiser calc

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#84 - Improve minimiser calc

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#83 - [FIX] helper needs to have at least 8u.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#83 - [FIX] helper needs to have at least 8u.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#82 - Opt parallel

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#82 - Opt parallel

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#81 - Parallel estimate

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#81 - Parallel estimate

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#79 - [Feature] Paralleize ibfmin.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#78 - [FIX] Using openmp on all devices.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#78 - [FIX] Using openmp on all devices.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#77 - Parallel minimiser

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#77 - Parallel minimiser

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#76 - [FIX] Error IBF_levels not stored.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#76 - [FIX] Error IBF_levels not stored.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#75 - [MISC] Adjust seed.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#75 - [MISC] Adjust seed.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#74 - [MISC] Use estimations directly, not extra result vector.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#74 - [MISC] Use estimations directly, not extra result vector.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#73 - [FEATURE] Parallelization of minimiser function.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#73 - [FEATURE] Parallelization of minimiser function.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#72 - [MISC] Make function parameter const if possible.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#72 - [MISC] Make function parameter const if possible.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#71 - [MISC] Use number of expression levels instead of size function.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#71 - [MISC] Use number of expression levels instead of size function.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#70 - Minimiser gets mantis cutoffs

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#70 - Minimiser gets mantis cutoffs

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#69 - Clean up code

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#69 - Clean up code

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#68 - [MISC] Make sure expression levels are sorted.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#68 - [MISC] Make sure expression levels are sorted.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#67 - Clean up

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#67 - Clean up

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#66 - [MISC] Clean up help in cli.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#66 - [MISC] Clean up help in cli.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#65 - Improve RAM usage

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#64 - [MISC] Improve RAM by using files as view.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#64 - [MISC] Improve RAM by using files as view.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#63 - [MISC] Improve RAM of count by only storing minimizers in genome file.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#63 - [MISC] Improve RAM of count by only storing minimizers in genome file.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#61 - [MISC] Reduce space of hash table by using 16bits instead of 64.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#61 - [MISC] Reduce space of hash table by using 16bits instead of 64.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#60 - [MISC] Start with biggest IBF for estimate.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#60 - [MISC] Start with biggest IBF for estimate.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#59 - [FIX] Typo.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#59 - [FIX] Typo.

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#58 - [FIX] Delete previous changes

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#58 - [FIX] Delete previous changes

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#56 - Delete me

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#56 - Delete me

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#55 - [MISC] Add seen before to estimate, to make sure a transcript is not …

Pull Request - State: closed - Opened by MitraDarja over 3 years ago - 1 comment

#55 - [MISC] Add seen before to estimate, to make sure a transcript is not …

Pull Request - State: closed - Opened by MitraDarja over 3 years ago - 1 comment

#54 - [FIX, MISC] Fix estimation error and delete threshold argument

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#54 - [FIX, MISC] Fix estimation error and delete threshold argument

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#53 - [FIX] Calculation of ibfmin and estimate

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#53 - [FIX] Calculation of ibfmin and estimate

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#51 - [FIX] CMD argument

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#50 - [MISC] Add missing cmd arguments

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#50 - [MISC] Add missing cmd arguments

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#49 - [FIX] Add missing expression level determination to ibfmin

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#49 - [FIX] Add missing expression level determination to ibfmin

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#48 - [MISC] Add argument parser arguments

Pull Request - State: closed - Opened by MitraDarja over 3 years ago

#47 - Estimate add different expression levels

Pull Request - State: closed - Opened by MitraDarja over 3 years ago