Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / seqan/igenvar issues and pull requests

#101 - [MISC] Add paired end reads to mini example

Issue - State: closed - Opened by Irallia over 3 years ago

#101 - [MISC] Add paired end reads to mini example

Issue - State: closed - Opened by Irallia over 3 years ago

#99 - [FEATURE] Add hierarchical clustering

Pull Request - State: closed - Opened by eldariont over 3 years ago - 7 comments

#99 - [FEATURE] Add hierarchical clustering

Pull Request - State: closed - Opened by eldariont over 3 years ago - 7 comments

#98 - [MISC] Copyright & License

Issue - State: open - Opened by Irallia over 3 years ago

#98 - [MISC] Copyright & License

Issue - State: open - Opened by Irallia over 3 years ago

#97 - [RELEASE EPIC] 0.0.3

Issue - State: closed - Opened by Irallia over 3 years ago - 1 comment
Labels: Epic

#97 - [RELEASE EPIC] 0.0.3

Issue - State: closed - Opened by Irallia over 3 years ago - 1 comment
Labels: Epic

#96 - [RELEASE] 0.0.2

Pull Request - State: closed - Opened by Irallia over 3 years ago

#96 - [RELEASE] 0.0.2

Pull Request - State: closed - Opened by Irallia over 3 years ago

#95 - [RELEASE EPIC] 0.0.2

Issue - State: closed - Opened by Irallia over 3 years ago
Labels: Epic

#95 - [RELEASE EPIC] 0.0.2

Issue - State: closed - Opened by Irallia over 3 years ago
Labels: Epic

#94 - [FEATURE] Improve junction detection

Issue - State: closed - Opened by eldariont over 3 years ago

#94 - [FEATURE] Improve junction detection

Issue - State: closed - Opened by eldariont over 3 years ago

#93 - iGenVar - Call Insertions from long reads

Issue - State: closed - Opened by eldariont over 3 years ago - 1 comment
Labels: Epic

#93 - iGenVar - Call Insertions from long reads

Issue - State: closed - Opened by eldariont over 3 years ago - 1 comment
Labels: Epic

#92 - [MISC] Add reads from negative strand to mini example

Issue - State: open - Opened by eldariont over 3 years ago

#92 - [MISC] Add reads from negative strand to mini example

Issue - State: open - Opened by eldariont over 3 years ago

#91 - [FIX] Fix EnumValidator

Pull Request - State: closed - Opened by Irallia over 3 years ago

#91 - [FIX] Fix EnumValidator

Pull Request - State: closed - Opened by Irallia over 3 years ago

#90 - Check sorting of BAM file.

Pull Request - State: closed - Opened by joshuak94 over 3 years ago - 2 comments

#90 - Check sorting of BAM file.

Pull Request - State: closed - Opened by joshuak94 over 3 years ago - 2 comments

#89 - [DOC] unify param description

Pull Request - State: closed - Opened by Irallia over 3 years ago - 5 comments
Labels: documentation

#89 - [DOC] unify param description

Pull Request - State: closed - Opened by Irallia over 3 years ago - 5 comments
Labels: documentation

#88 - iGenVar - Create a Structure for BAM Indexing

Issue - State: closed - Opened by Irallia over 3 years ago - 2 comments
Labels: Epic

#88 - iGenVar - Create a Structure for BAM Indexing

Issue - State: closed - Opened by Irallia over 3 years ago - 2 comments
Labels: Epic

#87 - [INFRA] Restructure `detect_variants_in_alignment_file()`

Issue - State: closed - Opened by Irallia over 3 years ago

#87 - [INFRA] Restructure `detect_variants_in_alignment_file()`

Issue - State: closed - Opened by Irallia over 3 years ago

#86 - [MISC] Check if the input BAM file is sorted

Issue - State: closed - Opened by Irallia over 3 years ago

#86 - [MISC] Check if the input BAM file is sorted

Issue - State: closed - Opened by Irallia over 3 years ago

#85 - [MISC] Double check if parse_cigar() can be exchanged by a seqan3 method.

Issue - State: closed - Opened by Irallia over 3 years ago - 2 comments

#85 - [MISC] Double check if parse_cigar() can be exchanged by a seqan3 method.

Issue - State: closed - Opened by Irallia over 3 years ago - 2 comments

#84 - iGenVar - Add all Methods of Vaquita

Issue - State: open - Opened by Irallia over 3 years ago
Labels: Epic

#84 - iGenVar - Add all Methods of Vaquita

Issue - State: open - Opened by Irallia over 3 years ago
Labels: Epic

#83 - [DOC] Create some documentation for the Vaquita workflow

Issue - State: open - Opened by Irallia over 3 years ago

#83 - [DOC] Create some documentation for the Vaquita workflow

Issue - State: open - Opened by Irallia over 3 years ago

#82 - [MISC] refactor representation of insertions

Pull Request - State: closed - Opened by eldariont over 3 years ago - 2 comments

#82 - [MISC] refactor representation of insertions

Pull Request - State: closed - Opened by eldariont over 3 years ago - 2 comments

#81 - [INFRA] Combine executables

Pull Request - State: closed - Opened by eldariont over 3 years ago - 1 comment

#81 - [INFRA] Combine executables

Pull Request - State: closed - Opened by eldariont over 3 years ago - 1 comment

#80 - Add random sampling for read depth estimation.

Pull Request - State: open - Opened by joshuak94 over 3 years ago - 2 comments

#80 - Add random sampling for read depth estimation.

Pull Request - State: open - Opened by joshuak94 over 3 years ago - 2 comments

#79 - [FEATURE] modularisation input

Pull Request - State: closed - Opened by Irallia over 3 years ago

#79 - [FEATURE] modularisation input

Pull Request - State: closed - Opened by Irallia over 3 years ago

#78 - [BUG] Possible problem with the enum validator

Issue - State: closed - Opened by Irallia over 3 years ago - 2 comments
Labels: bug

#78 - [BUG] Possible problem with the enum validator

Issue - State: closed - Opened by Irallia over 3 years ago - 2 comments
Labels: bug

#77 - [INFRA] Combine two existing executables into a single monolithic executable

Issue - State: closed - Opened by eldariont over 3 years ago - 1 comment

#77 - [INFRA] Combine two existing executables into a single monolithic executable

Issue - State: closed - Opened by eldariont over 3 years ago - 1 comment

#76 - [MISC] Refactor representation of insertions

Issue - State: closed - Opened by eldariont over 3 years ago

#76 - [MISC] Refactor representation of insertions

Issue - State: closed - Opened by eldariont over 3 years ago

#75 - Set ref_id to -1 and ref_pos to 0 if they are unset. Skip those reads.

Pull Request - State: closed - Opened by joshuak94 over 3 years ago - 1 comment

#75 - Set ref_id to -1 and ref_pos to 0 if they are unset. Skip those reads.

Pull Request - State: closed - Opened by joshuak94 over 3 years ago - 1 comment

#74 - [MISC] Update submodule googletest

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#74 - [MISC] Update submodule googletest

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#73 - [TEST] tidy up tests and add all method combination tests in a new file

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#73 - [TEST] tidy up tests and add all method combination tests in a new file

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#72 - [TEST] Add help page cli tests

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#72 - [TEST] Add help page cli tests

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#71 - [TEST] Add tests for the help pages.

Issue - State: closed - Opened by Irallia almost 4 years ago

#71 - [TEST] Add tests for the help pages.

Issue - State: closed - Opened by Irallia almost 4 years ago

#70 - [DOC] Add documentation to our classes and structs.

Issue - State: open - Opened by Irallia almost 4 years ago
Labels: documentation

#70 - [DOC] Add documentation to our classes and structs.

Issue - State: open - Opened by Irallia almost 4 years ago
Labels: documentation

#69 - [TEST] Write tests for different input parameters of detect_breakends.

Issue - State: closed - Opened by Irallia almost 4 years ago
Labels: good first issue

#69 - [TEST] Write tests for different input parameters of detect_breakends.

Issue - State: closed - Opened by Irallia almost 4 years ago
Labels: good first issue

#68 - [INFRA] Reorganize hpp and cpp files so building time decreases

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#68 - [INFRA] Reorganize hpp and cpp files so building time decreases

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#67 - [INFRA] modularisation - directory file management

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#67 - [INFRA] modularisation - directory file management

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#66 - [INFRA] modularisation - directory file management

Issue - State: closed - Opened by Irallia almost 4 years ago

#66 - [INFRA] modularisation - directory file management

Issue - State: closed - Opened by Irallia almost 4 years ago

#65 - [DOC] Add workflow

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 4 comments

#65 - [DOC] Add workflow

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 4 comments

#64 - [FEATURE] Switch methods to an enum vector and write own validator

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#64 - [FEATURE] Switch methods to an enum vector and write own validator

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#63 - [MISC] make iGenVar classes and structs start with uppercase letters

Pull Request - State: closed - Opened by eldariont almost 4 years ago

#63 - [MISC] make iGenVar classes and structs start with uppercase letters

Pull Request - State: closed - Opened by eldariont almost 4 years ago

#62 - [INFRA] Update from app-template

Pull Request - State: closed - Opened by eseiler almost 4 years ago

#62 - [INFRA] Update from app-template

Pull Request - State: closed - Opened by eseiler almost 4 years ago

#61 - [FEATURE] New class cluster for groups of similar junctions

Pull Request - State: closed - Opened by eldariont almost 4 years ago - 5 comments

#61 - [FEATURE] New class cluster for groups of similar junctions

Pull Request - State: closed - Opened by eldariont almost 4 years ago - 5 comments

#60 - [INFRA] remove travis yml and add github yml files

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#60 - [INFRA] remove travis yml and add github yml files

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#59 - Method selection over CLI does not work properly

Issue - State: closed - Opened by eldariont almost 4 years ago - 1 comment
Labels: bug

#59 - Method selection over CLI does not work properly

Issue - State: closed - Opened by eldariont almost 4 years ago - 1 comment
Labels: bug

#58 - [FEATURE] New option for the minimum length of variants to detect.

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#58 - [FEATURE] New option for the minimum length of variants to detect.

Pull Request - State: closed - Opened by Irallia almost 4 years ago - 1 comment

#57 - [TEST] Create a mini example for different SV types

Issue - State: closed - Opened by Irallia almost 4 years ago

#57 - [TEST] Create a mini example for different SV types

Issue - State: closed - Opened by Irallia almost 4 years ago

#55 - [FEATURE] Cluster junctions by a self-balancing binary tree

Issue - State: open - Opened by Irallia almost 4 years ago

#55 - [FEATURE] Cluster junctions by a self-balancing binary tree

Issue - State: open - Opened by Irallia almost 4 years ago

#54 - [FEATURE] Cluster junctions by hierarchical clustering

Issue - State: closed - Opened by Irallia almost 4 years ago

#54 - [FEATURE] Cluster junctions by hierarchical clustering

Issue - State: closed - Opened by Irallia almost 4 years ago

#53 - [FIX] Rearrange parameters of analyze_cigar()

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#53 - [FIX] Rearrange parameters of analyze_cigar()

Pull Request - State: closed - Opened by Irallia almost 4 years ago

#52 - [BUG] Mixed up output string.

Issue - State: closed - Opened by Irallia almost 4 years ago - 1 comment
Labels: bug

#52 - [BUG] Mixed up output string.

Issue - State: closed - Opened by Irallia almost 4 years ago - 1 comment
Labels: bug