seqan/chopper issues and pull requests

#50 - [FIX] Compute fp_correction for actual t_max

Pull Request - State: closed - Opened by smehringer over 3 years ago

#50 - [FIX] Compute fp_correction for actual t_max

Pull Request - State: closed - Opened by smehringer over 3 years ago

#49 - Union estimate matrix space optimization

Issue - State: closed - Opened by feldroop over 3 years ago - 1 comment
Labels: enhancement

#49 - Union estimate matrix space optimization

Issue - State: closed - Opened by feldroop over 3 years ago - 1 comment
Labels: enhancement

#48 - Benchmark influence of kmer counts on hll sketches

Issue - State: closed - Opened by smehringer over 3 years ago - 1 comment

#48 - Benchmark influence of kmer counts on hll sketches

Issue - State: closed - Opened by smehringer over 3 years ago - 1 comment

#47 - Statistics of the HIBF layout with --verbose

Pull Request - State: closed - Opened by feldroop over 3 years ago - 1 comment

#47 - Statistics of the HIBF layout with --verbose

Pull Request - State: closed - Opened by feldroop over 3 years ago - 1 comment

#46 - [TEST, NOP] Some clean up in chopper_pack and new tests for user errors.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 2 comments

#46 - [TEST, NOP] Some clean up in chopper_pack and new tests for user errors.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 2 comments

#45 - [TEST, NOP] Add chopper basic test. Change unreachable code.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#45 - [TEST, NOP] Add chopper basic test. Change unreachable code.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#44 - [TEST] tests for member functions random_shuffle, prune, rotate, and trace.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#44 - [TEST] tests for member functions random_shuffle, prune, rotate, and trace.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#43 - [TEST] Add tests for estimate_interval_unions

Pull Request - State: closed - Opened by smehringer over 3 years ago - 4 comments

#43 - [TEST] Add tests for estimate_interval_unions

Pull Request - State: closed - Opened by smehringer over 3 years ago - 4 comments

#42 - [FIX, TEST] Adds a test for read_hll_files and two fixes I encountered with the tests.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#42 - [FIX, TEST] Adds a test for read_hll_files and two fixes I encountered with the tests.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#41 - [NOP] Some clean up in user_bin_sequence_test.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#41 - [NOP] Some clean up in user_bin_sequence_test.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#40 - [TEST] First few test for the user_bin_sequence class

Pull Request - State: closed - Opened by smehringer over 3 years ago - 2 comments

#40 - [TEST] First few test for the user_bin_sequence class

Pull Request - State: closed - Opened by smehringer over 3 years ago - 2 comments

#39 - [TEST] Add data target used in hyperloglog_test.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#39 - [TEST] Add data target used in hyperloglog_test.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#38 - [INFRA] Add warnings flags

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#38 - [INFRA] Add warnings flags

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#37 - [INFRA] Add header test

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#37 - [INFRA] Add header test

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#36 - [TEST] Increase code coverage in hierarchical binning

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#36 - [TEST] Increase code coverage in hierarchical binning

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#35 - [TEST] Increase coverage in hierarchical_binning.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#35 - [TEST] Increase coverage in hierarchical_binning.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#34 - [FIX] Fix initialisation of hierarchical_binning.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 2 comments

#34 - [FIX] Fix initialisation of hierarchical_binning.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 2 comments

#33 - [TEST] Add hierarchical_binning test with a max split bin at position 0.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#33 - [TEST] Add hierarchical_binning test with a max split bin at position 0.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#32 - [TEST] Increase code coverage with easy test additions

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#32 - [TEST] Increase code coverage with easy test additions

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#31 - [REMOVE] Remove build and search module as they are part of raptor now.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#31 - [REMOVE] Remove build and search module as they are part of raptor now.

Pull Request - State: closed - Opened by smehringer over 3 years ago - 1 comment

#30 - [INFRA] Update badges

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#30 - [INFRA] Update badges

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#29 - [INFRA] Merge app-template

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#29 - [INFRA] Merge app-template

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#28 - Fix simple binning + Determine tmax

Pull Request - State: closed - Opened by feldroop over 3 years ago - 1 comment

#28 - Fix simple binning + Determine tmax

Pull Request - State: closed - Opened by feldroop over 3 years ago - 1 comment

#27 - [MISC] fix include order

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#27 - [MISC] fix include order

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#26 - [FIX] undeterministic test

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#26 - [FIX] undeterministic test

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#25 - [FIX] TB count computation

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#25 - [FIX] TB count computation

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#24 - Fix problems and implement lower level strategy

Pull Request - State: closed - Opened by feldroop over 3 years ago

#24 - Fix problems and implement lower level strategy

Pull Request - State: closed - Opened by feldroop over 3 years ago

#23 - [DOC] Add HIBF documentation

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#23 - [DOC] Add HIBF documentation

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#22 - [MISC] Add counting_agent

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#22 - [MISC] Add counting_agent

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#21 - [FEATURE] Add membership_agent to HIBF

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#21 - [FEATURE] Add membership_agent to HIBF

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#20 - [TEST] add pack test with HLLs

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#20 - [TEST] add pack test with HLLs

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#19 - [MISC,TEST] Add function for pretty-printing packing file

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#19 - [MISC,TEST] Add function for pretty-printing packing file

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#18 - [FEATURE] Add debug output

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#18 - [FEATURE] Add debug output

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#17 - [MISC] Use config and data in binning algorithms

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#17 - [MISC] Use config and data in binning algorithms

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#16 - [MISC] Reduce default alpha to 1.2

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#16 - [MISC] Reduce default alpha to 1.2

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#15 - [FIX] Also apply FPR correction in simple binning

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#15 - [FIX] Also apply FPR correction in simple binning

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#14 - Handle undefined correction factors

Issue - State: open - Opened by eseiler over 3 years ago - 2 comments

#14 - Handle undefined correction factors

Issue - State: open - Opened by eseiler over 3 years ago - 2 comments

#13 - Add factor for needed recursive levels

Pull Request - State: closed - Opened by feldroop over 3 years ago - 3 comments

#13 - Add factor for needed recursive levels

Pull Request - State: closed - Opened by feldroop over 3 years ago - 3 comments

#12 - Add level factor

Pull Request - State: closed - Opened by feldroop over 3 years ago - 2 comments

#12 - Add level factor

Pull Request - State: closed - Opened by feldroop over 3 years ago - 2 comments

#11 - Verify FPR correction on multi-level packing

Issue - State: closed - Opened by eseiler over 3 years ago - 1 comment

#11 - Verify FPR correction on multi-level packing

Issue - State: closed - Opened by eseiler over 3 years ago - 1 comment

#10 - Pack and Build interaction

Issue - State: closed - Opened by eseiler over 3 years ago - 2 comments

#10 - Pack and Build interaction

Issue - State: closed - Opened by eseiler over 3 years ago - 2 comments

#9 - FPR correction factor for chopper pack

Pull Request - State: closed - Opened by feldroop over 3 years ago - 1 comment

#8 - [MISC] First version of hierarchical_interleaved_bloom_filter

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#7 - HLL sketches follow-up

Issue - State: open - Opened by eseiler over 3 years ago

#6 - [FEATURE] use HLL sketches for pack algorithm

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#5 - [MISC] Add option for verbose timing

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#4 - [FEATURE] improve build parallelisation

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#3 - [FEATURE] parallel build

Pull Request - State: closed - Opened by eseiler over 3 years ago - 1 comment

#2 - [INFRA] remove app-template example

Pull Request - State: closed - Opened by eseiler over 3 years ago

#1 - [DOCS] update readme

Pull Request - State: closed - Opened by eseiler over 3 years ago

GitHub / seqan/chopper issues and pull requests