Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / senresearch/BulkLMM.jl issues and pull requests

#101 - scan function "weights" data type issue

Issue - State: open - Opened by jb621-star 5 months ago

#100 - Modified the backend code of the function scan() to improve efficiency.

Pull Request - State: closed - Opened by learningMalanya 8 months ago - 1 comment

#99 - Update to version v1.2.0

Pull Request - State: closed - Opened by GregFa about 1 year ago

#98 - Update README.md

Pull Request - State: closed - Opened by learningMalanya about 1 year ago

#97 - Updated NEWS.md for version 1.2.0

Pull Request - State: closed - Opened by learningMalanya about 1 year ago - 1 comment

#95 - Fixed the issue causing dimension mismatch in permutation with adjust…

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#94 - Documentation - bulkscan_null()

Issue - State: open - Opened by harperkole over 1 year ago - 1 comment

#92 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#91 - Export the bulkscan wrapper function.

Pull Request - State: closed - Opened by learningMalanya over 1 year ago

#90 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#89 - Dev

Pull Request - State: closed - Opened by GregFa over 1 year ago - 1 comment

#88 - updated README and Project.toml

Pull Request - State: closed - Opened by GregFa over 1 year ago

#87 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#86 - fixed typo in README

Pull Request - State: closed - Opened by GregFa over 1 year ago

#85 - error when running the examples

Issue - State: closed - Opened by lzhangUT over 1 year ago - 1 comment

#84 - Dev

Pull Request - State: closed - Opened by GregFa over 1 year ago

#83 - Add -log10(P) output option

Issue - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#82 - Dev

Pull Request - State: closed - Opened by GregFa over 1 year ago - 1 comment

#80 - update to v1.1.0

Pull Request - State: closed - Opened by GregFa over 1 year ago

#79 - Update README for 1.9.1

Pull Request - State: closed - Opened by GregFa over 1 year ago - 1 comment

#78 - Update README

Pull Request - State: closed - Opened by GregFa over 1 year ago

#77 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#76 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#75 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#74 - Dev

Pull Request - State: closed - Opened by GregFa over 1 year ago

#73 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#72 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 2 comments

#71 - Update Project.toml

Pull Request - State: closed - Opened by GregFa over 1 year ago

#70 - Dev

Pull Request - State: closed - Opened by GregFa over 1 year ago

#69 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 3 comments

#68 - Update ci.yml

Pull Request - State: closed - Opened by GregFa over 1 year ago - 2 comments

#67 - Dev

Pull Request - State: closed - Opened by GregFa over 1 year ago

#66 - Synch main

Pull Request - State: closed - Opened by GregFa over 1 year ago

#65 - Dev

Pull Request - State: closed - Opened by GregFa over 1 year ago

#64 - Updated NEWS.md to demonstrate what's new in the latest version compa…

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#63 - Updated Bulkscan functions' interfaces

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#62 - Added the function for plotting one-trait loglik

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#61 - New feature

Issue - State: closed - Opened by GregFa over 1 year ago - 2 comments

#60 - Corrected a small mistake in testing grid-brent's method.

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 1 comment

#59 - Merge pull request #52 from senresearch/dev

Pull Request - State: closed - Opened by GregFa over 1 year ago - 1 comment

#58 - Initialized the folder for conducting downstream analyses

Pull Request - State: closed - Opened by learningMalanya over 1 year ago - 2 comments

#56 - NEWS.md

Issue - State: closed - Opened by learningMalanya over 1 year ago

#53 - Dev

Pull Request - State: closed - Opened by learningMalanya over 1 year ago

#52 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#51 - Multithreading inefficiency in tR2LOD!() in bulkscan.jl

Issue - State: closed - Opened by learningMalanya almost 2 years ago

#50 - Performing test of more than one degree of freedom

Issue - State: open - Opened by learningMalanya almost 2 years ago

#48 - Changes to README

Pull Request - State: closed - Opened by sens almost 2 years ago - 1 comment

#47 - TagBot trigger issue

Issue - State: closed - Opened by JuliaTagBot almost 2 years ago - 27 comments

#46 - Adjustment for fixed set of covariates for all traits

Issue - State: closed - Opened by sens almost 2 years ago - 2 comments
Labels: enhancement

#45 - Report effect sizes with LOD scores

Issue - State: open - Opened by sens almost 2 years ago
Labels: enhancement

#44 - rectified README version

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#43 - fixed dimensions issues for plotting; corrected typos in README

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#42 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#41 - Update README

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#40 - Updated 1d plot of the example single trait results

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago - 1 comment

#39 - corrected command line to include plot_utils

Pull Request - State: closed - Opened by GregFa almost 2 years ago - 1 comment

#38 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#37 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#36 - Modified visuals

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#35 - Visuals

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#34 - Dev

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago

#33 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago - 1 comment

#32 - Dev

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago

#31 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#30 - Dev

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago

#29 - README needs

Issue - State: open - Opened by sens almost 2 years ago - 2 comments

#28 - Corrected Bayesian posterior formula; uploaded README.md

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago

#27 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#26 - Corrected the abs() in r2lod().

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago - 2 comments

#25 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago - 1 comment

#23 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#22 - Dev

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago

#21 - scan_lite_multivariate() `nb` should have a default

Issue - State: closed - Opened by GregFa almost 2 years ago - 1 comment

#20 - Try testing with serial loops

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago

#19 - Added the test file of bulkscan back

Pull Request - State: closed - Opened by learningMalanya almost 2 years ago

#18 - Testing

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#17 - Update runtests.jl

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#16 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#15 - Update ci.yml

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#14 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#13 - Dev

Pull Request - State: closed - Opened by GregFa almost 2 years ago

#12 - Added the notebook scan_permutation_demo.ipynb

Pull Request - State: closed - Opened by learningMalanya about 2 years ago

#10 - Added checks for illegal divisions by zeros

Pull Request - State: closed - Opened by learningMalanya about 2 years ago - 3 comments

#9 - Modifications to ls and wls functions

Pull Request - State: closed - Opened by sens over 2 years ago

#8 - wls() function in wls.jl: argument `method == cholesky` is unused

Issue - State: closed - Opened by learningMalanya over 2 years ago - 1 comment

#7 - rowMultiply() function in util.jl is missing return statement

Issue - State: closed - Opened by learningMalanya over 2 years ago - 1 comment

#6 - Added the Rmd that uses lmmlite

Pull Request - State: closed - Opened by learningMalanya over 2 years ago

#4 - Redundancy in RSS coding?

Issue - State: closed - Opened by learningMalanya over 2 years ago - 1 comment

#3 - reml loglik formulas in ls() and wls() functions in wls.jl:

Issue - State: closed - Opened by learningMalanya over 2 years ago - 1 comment