seekrcentral/seekr2 issues and pull requests

#31 - How to use multiple GPU ?

Issue - State: open - Opened by MissRaut over 1 year ago - 11 comments

#30 - Facing an issue in running seekr2 in the HIDR step on trypsin-benzamidine system

Issue - State: closed - Opened by MissRaut over 1 year ago - 8 comments

#29 - Import Error During Installation

Issue - State: closed - Opened by mukherjeesutanu over 1 year ago - 2 comments

#28 - warnings in prepare.py step

Issue - State: closed - Opened by pulkit2907 almost 2 years ago - 1 comment

#27 - error setting up seekr2 calculation with Heme protein

Issue - State: closed - Opened by vaibhavadixit about 2 years ago - 13 comments

#26 - Build Seekr2 Plugin from source fails

Issue - State: closed - Opened by dpaschall about 2 years ago - 3 comments

#25 - converge step failure

Issue - State: closed - Opened by vaibhavadixit about 2 years ago - 12 comments

#24 - installing seekr2 on HPC via user account

Issue - State: closed - Opened by vaibhavadixit about 2 years ago - 24 comments

#23 - error in prepare step due to ambpdb output

Issue - State: closed - Opened by vaibhavadixit about 2 years ago - 1 comment

#22 - error at the convergence step

Issue - State: closed - Opened by vaibhavadixit about 2 years ago - 7 comments

#21 - BD or MD first with run.py any

Issue - State: closed - Opened by vaibhavadixit about 2 years ago - 25 comments

#20 - seekr2 testing error on HPC

Issue - State: closed - Opened by vaibhavadixit over 2 years ago - 16 comments

#19 - assumptions related to milestoning size/shape interactions in MD region

Issue - State: closed - Opened by vaibhavadixit over 2 years ago - 8 comments

#18 - error while generating trypsin-benzamidine smd input for hidr

Issue - State: closed - Opened by vaibhavadixit over 2 years ago - 6 comments

#17 - Convergence Check

Issue - State: closed - Opened by xfang216 over 2 years ago - 36 comments

#16 - unable to locate trypsin-benzamidine tutorial page

Issue - State: closed - Opened by vaibhavadixit over 2 years ago - 3 comments

#15 - Non-Uniform Discretization

Issue - State: closed - Opened by xfang216 over 2 years ago - 10 comments

#14 - Importance of Target vulnerability for binding kinetics

Issue - State: closed - Opened by vaibhavadixit over 2 years ago - 3 comments

#13 - errors in seekr2 test

Issue - State: closed - Opened by vaibhavadixit over 2 years ago - 5 comments

#12 - query about tutorial simulation time trypsin-benzamidine

Issue - State: closed - Opened by vaibhavadixit about 3 years ago - 9 comments

#11 - attribute error in analyze.py

Issue - State: closed - Opened by bensebaer about 3 years ago - 3 comments

#10 - presimulation check failures and Model Input File

Issue - State: closed - Opened by vaibhavadixit about 3 years ago - 12 comments

#9 - error in SMD step trypsin-benzamidine tutorial

Issue - State: closed - Opened by vaibhavadixit about 3 years ago - 6 comments

#8 - simtk.openmm.OpenMMException: Error loading CUDA module: CUDA_ERROR_INVALID_PTX (218)

Issue - State: closed - Opened by vaibhavadixit about 3 years ago - 14 comments

#7 - Question/Issue: Index Error running BD-Milestone

Issue - State: closed - Opened by bensebaer about 3 years ago - 11 comments

#6 - AttributeError running Browndye2

Issue - State: closed - Opened by bensebaer about 3 years ago - 2 comments

#5 - Issue running OpenMM in the tutorial

Issue - State: closed - Opened by bensebaer over 3 years ago - 5 comments

#4 - Get testing operational

Pull Request - State: closed - Opened by j-wags over 3 years ago

#3 - Deleted print statement in Box_vectors to_quantity method

Pull Request - State: closed - Opened by astokely over 3 years ago - 1 comment

#2 - Deleted print statement in Box_vectors to_quantity method