Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / seattleflu/assembly issues and pull requests
#33 - Update criseq submission pipeline to support RSV and flu
Pull Request -
State: closed - Opened by sallybg over 1 year ago
#32 - Fix bcftools errors
Pull Request -
State: closed - Opened by sallybg over 1 year ago
#31 - Update flu B reference and reformat flu A segment names
Pull Request -
State: closed - Opened by sallybg over 1 year ago
#30 - Updates to submission pipeline to support RSV and flu
Pull Request -
State: closed - Opened by davereinhart over 1 year ago
#29 - MIPS pipeline submission updates
Pull Request -
State: closed - Opened by davereinhart almost 2 years ago
- 1 comment
#28 - Submission updates
Pull Request -
State: closed - Opened by davereinhart about 2 years ago
#27 - Standardize date format for OR DOH submissions
Pull Request -
State: closed - Opened by davereinhart about 2 years ago
#26 - Use semicolon delimiter when concatenating pangolin values
Pull Request -
State: closed - Opened by davereinhart over 2 years ago
#25 - Identify VoCs by clade instead of pangolin
Pull Request -
State: closed - Opened by davereinhart over 2 years ago
- 2 comments
#24 - Add clade 22D (Pango lineage BA.2.75) to VoCs
Pull Request -
State: closed - Opened by davereinhart over 2 years ago
#23 - Add Cascadia submission group
Pull Request -
State: closed - Opened by davereinhart over 2 years ago
#22 - Add check for empty dataframe before creating final submission outputs
Pull Request -
State: closed - Opened by davereinhart over 2 years ago
#21 - Add script to automate setup of input files and folders
Pull Request -
State: closed - Opened by davereinhart over 2 years ago
- 3 comments
#20 - Add option for pipeline to accept fastq files that are already pooled/lane-merged
Pull Request -
State: closed - Opened by leahkemp over 3 years ago
#19 - Submissions
Pull Request -
State: closed - Opened by joverlee521 over 3 years ago
#18 - Mpileup2cns
Pull Request -
State: closed - Opened by joverlee521 almost 4 years ago
#17 - Flu B percent identity
Pull Request -
State: closed - Opened by joverlee521 about 4 years ago
- 1 comment
#17 - Flu B percent identity
Pull Request -
State: closed - Opened by joverlee521 about 4 years ago
- 1 comment
#16 - Clean up Snakefiles and remove strand filter
Pull Request -
State: closed - Opened by joverlee521 over 4 years ago
#15 - fix: fasta_headers rule race condition
Pull Request -
State: closed - Opened by joverlee521 over 5 years ago
#14 - Run one snakefile plus report not mapped
Pull Request -
State: closed - Opened by kairstenfay over 5 years ago
- 13 comments
#13 - Checkpoint mapped reads
Pull Request -
State: closed - Opened by joverlee521 over 5 years ago
- 1 comment
#12 - Report not mapped
Pull Request -
State: closed - Opened by joverlee521 over 5 years ago
- 2 comments
#11 - Backfill genome data
Pull Request -
State: closed - Opened by joverlee521 over 5 years ago
- 2 comments
#10 - Run one sample
Pull Request -
State: closed - Opened by joverlee521 over 5 years ago
- 5 comments
#9 - Excess mutations due to lack of reverse reads
Issue -
State: closed - Opened by joverlee521 over 5 years ago
- 3 comments
#8 - Improve masking
Pull Request -
State: closed - Opened by joverlee521 over 5 years ago
- 2 comments
#7 - Upload consensus genomes to id3c
Pull Request -
State: closed - Opened by kairstenfay over 5 years ago
- 10 comments
#6 - SFS optimization
Pull Request -
State: closed - Opened by joverlee521 over 5 years ago
#5 - Data optimization
Pull Request -
State: closed - Opened by barneypotter24 over 5 years ago
#4 - Mask fasta
Pull Request -
State: closed - Opened by joverlee521 almost 6 years ago
- 1 comment
#3 - Conditional execution
Pull Request -
State: closed - Opened by joverlee521 almost 6 years ago
#2 - Sample ref pairing
Pull Request -
State: closed - Opened by joverlee521 almost 6 years ago
- 1 comment
#1 - Merge lanes
Pull Request -
State: closed - Opened by barneypotter24 almost 6 years ago
- 3 comments