Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / seanrjohnson/protein_gibbs_sampler issues and pull requests

#16 - install failure for conda Installation

Issue - State: open - Opened by biocuckooHXH 6 months ago - 3 comments

#15 - Making one of the files a bit cleaner and removing extraneous code

Pull Request - State: open - Opened by KeaunAmani over 1 year ago - 1 comment

#14 - Regression weights not found

Issue - State: closed - Opened by luhong88 over 1 year ago - 1 comment

#13 - Performance and organizational improvements

Pull Request - State: closed - Opened by KeaunAmani almost 2 years ago - 6 comments

#12 - making installation better

Pull Request - State: closed - Opened by KeaunAmani almost 2 years ago - 3 comments

#11 - Improvements to likelihood_esm_msa.py

Issue - State: open - Opened by seanrjohnson almost 2 years ago - 1 comment
Labels: enhancement

#10 - off by one error in pgen_msa.py ?

Issue - State: closed - Opened by seanrjohnson about 2 years ago - 4 comments

#9 - Add optimization for individual masking of msa log likelihood

Pull Request - State: closed - Opened by smonaco47 over 3 years ago - 1 comment

#8 - Metrics msa batch by seq len

Pull Request - State: closed - Opened by smonaco47 over 3 years ago - 1 comment

#7 - Implement Metropolis Hastings sampling

Issue - State: open - Opened by seanrjohnson over 3 years ago
Labels: enhancement

#6 - proteins generated from esm-msa sometimes end in <mask>

Issue - State: closed - Opened by seanrjohnson over 3 years ago - 1 comment
Labels: bug

#5 - Add support for batch_size > 1 in pgen_esm_from_fasta.py

Issue - State: open - Opened by seanrjohnson over 3 years ago - 1 comment
Labels: enhancement

#4 - Esm1b followup

Pull Request - State: closed - Opened by seanrjohnson over 3 years ago

#3 - Update AA selection to only select from standard set of AA

Pull Request - State: closed - Opened by smonaco47 over 3 years ago - 2 comments

#2 - Setting up Container Env: Missing docker image and directories

Issue - State: closed - Opened by KahiniWadhawan over 3 years ago - 3 comments

#1 - Add support for batching ESM sampler

Pull Request - State: closed - Opened by smonaco47 almost 4 years ago