Ecosyste.ms: Issues

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GitHub / seandavi/sradb issues and pull requests

#38 - Data is not fetched.

Issue - State: open - Opened by Saeedjaanz over 1 year ago - 1 comment

#37 - No URLs working, I could not download the metadata database

Issue - State: open - Opened by Majid-Soheili over 2 years ago - 5 comments

#35 - Possible empty tables in the current SQLite file

Issue - State: open - Opened by chappers2 over 4 years ago

#35 - Possible empty tables in the current SQLite file

Issue - State: open - Opened by chappers2 over 4 years ago

#33 - SRAdb not working(Error in if (is.na)

Issue - State: open - Opened by avrajit over 4 years ago

#33 - SRAdb not working(Error in if (is.na)

Issue - State: open - Opened by avrajit over 4 years ago

#32 - SRAdb not available for R version 4.0.1

Issue - State: open - Opened by apc1992 over 4 years ago - 1 comment

#32 - SRAdb not available for R version 4.0.1

Issue - State: open - Opened by apc1992 over 4 years ago - 1 comment

#31 - sqlite is outdates and is different between amazon and backup URL

Issue - State: open - Opened by antonkulaga over 4 years ago - 1 comment

#31 - sqlite is outdates and is different between amazon and backup URL

Issue - State: open - Opened by antonkulaga over 4 years ago - 1 comment

#30 - issue listSRAfile

Issue - State: open - Opened by AminChoukrallah over 4 years ago

#29 - pathogen host data

Issue - State: closed - Opened by noahaus almost 5 years ago - 6 comments

#29 - pathogen host data

Issue - State: closed - Opened by noahaus almost 5 years ago - 6 comments

#28 - getSRAdbFile Problem

Issue - State: open - Opened by GanQiao1990 about 5 years ago - 2 comments

#26 - Paired end fastq FTP incorrect

Issue - State: open - Opened by OgnjenMilicevic over 5 years ago

#26 - Paired end fastq FTP incorrect

Issue - State: open - Opened by OgnjenMilicevic over 5 years ago

#25 - getSRAfile: argument is of length zero

Issue - State: closed - Opened by Npbs8691 over 5 years ago - 5 comments

#24 - SRADb does not seems up to date

Issue - State: open - Opened by dktanwar over 5 years ago

#24 - SRADb does not seems up to date

Issue - State: open - Opened by dktanwar over 5 years ago

#23 - listSRAfile() fails for SRX accessions

Issue - State: open - Opened by RoganGrant almost 6 years ago

#22 - Update Frequency

Issue - State: closed - Opened by saketkc almost 6 years ago - 1 comment

#21 - getSRA() did not return all available study (SRP*/ERP*/DRP*) IDs

Issue - State: open - Opened by parnika91 almost 6 years ago - 1 comment

#20 - Missing data

Issue - State: closed - Opened by ndaniel almost 6 years ago - 1 comment

#19 - Is it possible to generate the sqlite DB from scratch?

Issue - State: open - Opened by audy about 6 years ago - 4 comments

#19 - Is it possible to generate the sqlite DB from scratch?

Issue - State: open - Opened by audy about 6 years ago - 4 comments

#18 - SRAdbFile does not exist

Issue - State: closed - Opened by iprada over 6 years ago - 1 comment

#18 - SRAdbFile does not exist

Issue - State: closed - Opened by iprada over 6 years ago - 1 comment

#17 - Missing metadata

Issue - State: closed - Opened by wwood over 6 years ago - 5 comments

#17 - Missing metadata

Issue - State: closed - Opened by wwood over 6 years ago - 5 comments

#16 - getSRAfile can't open URL to download

Issue - State: closed - Opened by minwang90 almost 7 years ago - 3 comments

#16 - getSRAfile can't open URL to download

Issue - State: closed - Opened by minwang90 almost 7 years ago - 3 comments

#15 - getSRAfile skip a file before completing downloading

Issue - State: closed - Opened by xinl22 about 7 years ago - 11 comments

#15 - getSRAfile skip a file before completing downloading

Issue - State: closed - Opened by xinl22 about 7 years ago - 11 comments

#14 - Swap retired `ByExp` paths to supported `ByRun`paths

Pull Request - State: closed - Opened by pkimes about 7 years ago - 1 comment

#13 - getSRAfile: cannot open URL

Issue - State: closed - Opened by arnaudceol about 7 years ago

#12 - getFASTQfile fails - no such table: sra

Issue - State: closed - Opened by ShixiangWang about 7 years ago - 4 comments

#11 - No URLs working

Issue - State: closed - Opened by saketkc over 7 years ago - 26 comments

#10 - getSRAdbFile() error, cannot download file

Issue - State: closed - Opened by jakeyeung over 7 years ago - 17 comments

#9 - fastq table damaged -> fastq download broken

Issue - State: open - Opened by ringprince almost 8 years ago - 1 comment

#8 - Paired fastq file download error

Issue - State: open - Opened by nsarode over 8 years ago

#7 - getSRAinfo() produces access denied error

Issue - State: open - Opened by eavincent over 8 years ago

#6 - getFASTQinfo fails - no such table: fastq

Issue - State: closed - Opened by bkamapantula almost 9 years ago - 4 comments

#5 - Switch to httr for downloads

Issue - State: closed - Opened by seandavi almost 9 years ago - 2 comments
Labels: bug

#4 - Empty supplementary fields

Issue - State: closed - Opened by seandavi almost 10 years ago - 1 comment
Labels: bug

#3 - install_github("seandavi/SRAdb")

Issue - State: closed - Opened by SharifiZarchi about 10 years ago - 1 comment

#2 - getSRA, sqliteTableFields not found

Issue - State: closed - Opened by SharifiZarchi about 10 years ago

#1 - Deal with rsqlite changes

Issue - State: closed - Opened by seandavi over 10 years ago
Labels: enhancement