Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / seandavi/awesome-single-cell issues and pull requests

#306 - add torchdr in the dimension reduction section

Pull Request - State: open - Opened by huguesva 28 days ago

#305 - add scRepertoire

Pull Request - State: closed - Opened by Qile0317 about 1 month ago - 1 comment

#304 - add APackOfTheClones

Pull Request - State: closed - Opened by Qile0317 about 1 month ago

#303 - Add an R package for cell type annotation using CellMarker2.0 database

Pull Request - State: closed - Opened by person-c about 2 months ago - 1 comment

#302 - fixing reference

Pull Request - State: closed - Opened by opoirion 2 months ago

#301 - Enhlink

Pull Request - State: closed - Opened by opoirion 2 months ago

#300 - added `nf-core/scnanoseq`

Pull Request - State: closed - Opened by lianov 3 months ago - 1 comment

#299 - Update README.md

Pull Request - State: closed - Opened by swainasish 3 months ago - 1 comment

#296 - Update README.md

Pull Request - State: closed - Opened by jianhong 8 months ago

#295 - Adding Numbat and SComatic

Pull Request - State: closed - Opened by teng-gao 8 months ago

#294 - Fixed geosketch URL target

Pull Request - State: closed - Opened by jpcartailler 9 months ago - 1 comment

#293 - add dseqr

Pull Request - State: closed - Opened by alexvpickering 9 months ago

#292 - Add CELLxGENE to "Web portals and databases".

Pull Request - State: closed - Opened by kozo2 10 months ago

#291 - Update reference

Pull Request - State: closed - Opened by lingfeiwang over 1 year ago

#290 - Add scRNA-seq and scATAC-seq integration methods

Pull Request - State: closed - Opened by carushi over 1 year ago - 1 comment

#289 - update celda DecontX scruff singlecellTK

Pull Request - State: closed - Opened by zhewa over 1 year ago

#288 - Add cell interaction section

Pull Request - State: closed - Opened by jgarces02 over 1 year ago - 1 comment

#287 - fixed minor typos

Pull Request - State: closed - Opened by hallvaaw almost 2 years ago

#286 - some additions and corrections

Pull Request - State: closed - Opened by sbwiecko almost 2 years ago - 2 comments

#285 - Adding Phenotype Cover for marker selection

Pull Request - State: closed - Opened by euxhenh almost 2 years ago - 1 comment

#284 - add entry for "scbs", a tool for sc methylation data

Pull Request - State: closed - Opened by LKremer about 2 years ago - 1 comment

#283 - Added contents section

Pull Request - State: closed - Opened by hallvaaw about 2 years ago - 1 comment

#282 - Include nf-core/scrnaseq and nf-core/scflow

Pull Request - State: closed - Opened by heylf about 2 years ago - 1 comment

#281 - Add SpaTalk

Pull Request - State: closed - Opened by multitalk about 2 years ago - 1 comment

#280 - Add SCP

Pull Request - State: closed - Opened by zhanghao-njmu about 2 years ago - 1 comment

#279 - added SCIFER to other applications

Pull Request - State: closed - Opened by hallvaaw about 2 years ago

#278 - Moved Normalisr

Pull Request - State: closed - Opened by lingfeiwang about 2 years ago

#277 - Add Dictys

Pull Request - State: closed - Opened by lingfeiwang about 2 years ago - 1 comment

#276 - Add DALI

Pull Request - State: closed - Opened by kverstae about 2 years ago - 1 comment

#275 - Add single-cell data analysis models

Pull Request - State: closed - Opened by rff-89 over 2 years ago

#273 - Added ResPAN to batch-effect removal methods

Pull Request - State: closed - Opened by AprilYuge over 2 years ago - 1 comment

#272 - Add GLUE

Pull Request - State: closed - Opened by Jeff1995 over 2 years ago - 1 comment

#271 - update readme with dsb info

Pull Request - State: closed - Opened by MattPM over 2 years ago - 1 comment

#270 - Update to Cellar links and paper

Pull Request - State: closed - Opened by euxhenh over 2 years ago

#269 - Added scTE to other applications.

Pull Request - State: closed - Opened by hallvaaw over 2 years ago - 1 comment

#268 - Added scTOP

Pull Request - State: closed - Opened by maria-yampolskaya over 2 years ago - 1 comment

#267 - Update README.md

Pull Request - State: closed - Opened by asif7adil over 2 years ago

#266 - Added CellWalkR to Multi-assay data integration

Pull Request - State: closed - Opened by hallvaaw over 2 years ago - 1 comment

#265 - Add InterCellar

Pull Request - State: closed - Opened by martaint over 2 years ago - 1 comment

#264 - Adding Cellar

Pull Request - State: closed - Opened by euxhenh almost 3 years ago - 1 comment

#263 - Add CoSpar for dynamic inference

Pull Request - State: closed - Opened by ShouWenWang almost 3 years ago - 1 comment

#262 - added EpiScanpy in Epigenomics

Pull Request - State: closed - Opened by qlan20 almost 3 years ago - 1 comment

#261 - SCEVAN

Pull Request - State: closed - Opened by AntonioDeFalco almost 3 years ago - 2 comments

#260 - Added kallisto, bustools, ffq and picasso

Pull Request - State: closed - Opened by lakigigar about 3 years ago - 1 comment

#259 - Update README.md

Pull Request - State: closed - Opened by lingfeiwang about 3 years ago - 1 comment

#258 - Add a new section and a new method

Pull Request - State: closed - Opened by AprilYuge about 3 years ago - 1 comment

#257 - Added ShinyArchUiO to Interactive visualization and analysis

Pull Request - State: closed - Opened by hallvaaw about 3 years ago - 1 comment

#256 - ShinyArchRUiO

Pull Request - State: closed - Opened by hallvaaw about 3 years ago

#255 - CHETAH is published in NAR

Issue - State: open - Opened by plijnzaad about 3 years ago

#254 - Add some probabilistic modeling approaches / libs

Issue - State: open - Opened by grisaitis about 3 years ago - 1 comment

#253 - Added AMULET with description.

Pull Request - State: closed - Opened by alperoglu about 3 years ago - 1 comment

#252 - Added scarf

Pull Request - State: closed - Opened by parashardhapola over 3 years ago

#251 - Update README.md

Pull Request - State: closed - Opened by rob-p over 3 years ago

#250 - add scGEAToolbox

Pull Request - State: closed - Opened by jamesjcai over 3 years ago - 1 comment

#248 - Added multiple new categories

Pull Request - State: closed - Opened by parashardhapola over 3 years ago

#247 - moved packages from RNA-Seq to Pseudotime category

Pull Request - State: closed - Opened by parashardhapola over 3 years ago

#246 - Added new category: Pseudotime and trajectory inference

Pull Request - State: closed - Opened by parashardhapola over 3 years ago

#245 - Added a new category: Feature (Gene) imputation

Pull Request - State: closed - Opened by parashardhapola over 3 years ago - 1 comment

#244 - Add geosketch

Pull Request - State: closed - Opened by parashardhapola over 3 years ago - 1 comment

#243 - feat: add celltypist.

Pull Request - State: closed - Opened by markgene over 3 years ago - 1 comment

#242 - Update README.md

Pull Request - State: closed - Opened by tkisss over 3 years ago - 1 comment

#241 - Added ChromSCape

Pull Request - State: closed - Opened by Pacomito over 3 years ago - 1 comment

#240 - Added Asc-Seurat to Interactive visualization and analysis

Pull Request - State: closed - Opened by wendelljpereira over 3 years ago - 1 comment

#239 - Poster

Pull Request - State: closed - Opened by shijianasdf over 3 years ago - 1 comment

#238 - Add clustifyr package?

Issue - State: open - Opened by agillen over 3 years ago

#237 - Added ArchR

Pull Request - State: closed - Opened by hy-Yang over 3 years ago - 1 comment

#236 - Update README.md

Pull Request - State: closed - Opened by mathewchamberlain over 3 years ago - 1 comment

#235 - Add CopyKAT and move inferCNV methods to Copy Number Analysis section

Pull Request - State: closed - Opened by grst over 3 years ago

#234 - Add Vitessce, an interactive visualization tool

Pull Request - State: closed - Opened by keller-mark almost 4 years ago - 1 comment

#233 - Add inferCNVpy, a Python/Scanpy reimplementation of inferCNV

Pull Request - State: closed - Opened by grst almost 4 years ago - 1 comment

#232 - add ATACdemultiplex utilities for snATAC-Seq data low-level routines

Pull Request - State: closed - Opened by opoirion almost 4 years ago

#231 - Single-cell package in Python to add to the list?

Issue - State: open - Opened by taylordm almost 4 years ago

#230 - SCIFIL added

Pull Request - State: closed - Opened by bkutlu about 4 years ago

#229 - are there any python-based scRNAseq simulators?

Issue - State: open - Opened by chansigit about 4 years ago

#228 - Add Millefy

Pull Request - State: closed - Opened by yuifu about 4 years ago - 1 comment

#227 - Added Merfishtools, alphabetically reorder list

Pull Request - State: closed - Opened by bkutlu about 4 years ago

#226 - Muscat added

Pull Request - State: closed - Opened by bkutlu about 4 years ago - 1 comment

#225 - Add solo, a tool for doublet detection.

Pull Request - State: closed - Opened by grst about 4 years ago - 1 comment

#224 - added symsim

Pull Request - State: closed - Opened by bkutlu about 4 years ago - 1 comment

#223 - added countsimQC

Pull Request - State: closed - Opened by bkutlu about 4 years ago - 1 comment

#222 - added scicone to copy number analysis section

Pull Request - State: closed - Opened by anilbey about 4 years ago

#221 - Update README.md

Pull Request - State: closed - Opened by joshua-gould about 4 years ago - 1 comment

#220 - Package scedar is missing.

Issue - State: open - Opened by taylordm about 4 years ago

#219 - Update README.md

Pull Request - State: closed - Opened by pickw about 4 years ago - 1 comment

#218 - Update README.md

Pull Request - State: closed - Opened by pickw about 4 years ago

#217 - adding cellxgene VIP

Pull Request - State: closed - Opened by likejie about 4 years ago - 1 comment

#216 - Adding a new tool - BIRD

Pull Request - State: closed - Opened by WeiqiangZhou over 4 years ago - 1 comment

#215 - Added SCATE package and modified SCRAT package.

Pull Request - State: closed - Opened by zji90 over 4 years ago

#214 - Update README.md

Pull Request - State: closed - Opened by Biomiha over 4 years ago - 1 comment

#213 - Add immunarch, move Snakemake

Pull Request - State: closed - Opened by vadimnazarov over 4 years ago - 1 comment

#212 - Update README.md

Pull Request - State: closed - Opened by yeroslaviz over 4 years ago

#211 - #211 add IRIS3 web server

Pull Request - State: closed - Opened by Wang-Cankun over 4 years ago - 1 comment

#210 - Added SCCAF

Pull Request - State: closed - Opened by dawe over 4 years ago

#209 - added schist

Pull Request - State: closed - Opened by dawe over 4 years ago - 1 comment

#208 - Add R package Scillus

Pull Request - State: closed - Opened by xmc811 over 4 years ago

#207 - Request to add ImmClassifier

Pull Request - State: closed - Opened by sgosline over 4 years ago - 1 comment