sdorkenw/MeshParty issues and pull requests

#102 - [DRAFT] NetworkX 3 support

Pull Request - State: open - Opened by bdpedigo 11 months ago - 1 comment

#101 - Meshparty no longer loading

Issue - State: open - Opened by shandran about 1 year ago - 1 comment

#100 - Error when trying to add annotation to meshwork

Issue - State: open - Opened by bdpedigo about 1 year ago

#99 - Documentation missing for meshwork module

Issue - State: open - Opened by bdpedigo about 1 year ago

#98 - Is it correct that the computed skeleton is supposed to be on the mesh surface? Anything I did was wrong?

Issue - State: open - Opened by lxmedai about 1 year ago - 2 comments

#97 - Tiny typo fix in visualization tutorial

Pull Request - State: closed - Opened by bdpedigo about 1 year ago

#96 - Add NetworkX 3 compatibility

Issue - State: open - Opened by bdpedigo about 1 year ago - 1 comment

#95 - Fix casting

Pull Request - State: closed - Opened by ceesem over 1 year ago

#94 - Error using skeletonize.skeletonize_mesh

Issue - State: closed - Opened by jboulanger91 over 1 year ago

#93 - Error using the trimesh_io.download_meshes function

Issue - State: closed - Opened by jboulanger91 over 1 year ago - 3 comments

#92 - removing trimesh_vtk

Pull Request - State: open - Opened by fcollman over 1 year ago

#91 - Request: Split `MeshParty` into several packages

Issue - State: open - Opened by caniko over 1 year ago - 5 comments

#90 - Version patch

Pull Request - State: closed - Opened by ceesem over 1 year ago

#89 - Less opinionated splitting

Pull Request - State: closed - Opened by ceesem over 1 year ago - 1 comment

#88 - Allow optional pyembree installation

Pull Request - State: closed - Opened by ceesem almost 2 years ago

#87 - install before testing

Pull Request - State: open - Opened by fcollman almost 2 years ago

#86 - Fix typo

Pull Request - State: open - Opened by sdorkenw almost 2 years ago - 1 comment

#85 - Mesh cellbody interior

Issue - State: closed - Opened by 0xJustin almost 2 years ago - 2 comments

#84 - `pip install meshparty` fails on M1 Mac, python3.8

Issue - State: closed - Opened by jasper-tms almost 2 years ago - 6 comments

#83 - skeleton coloring changes

Pull Request - State: closed - Opened by fcollman about 2 years ago

#82 - fixed edge case in resample map where there is one child node of the root/soma

Pull Request - State: closed - Opened by emjoyce over 2 years ago

#81 - fix issues with adding anno to masked meshwork

Pull Request - State: closed - Opened by ceesem over 2 years ago

#80 - Downloading precomputed meshes from sharded multi level mesh sources fails

Issue - State: closed - Opened by Raphtor almost 3 years ago - 2 comments

#79 - Failed to skeletonize the mesh

Issue - State: closed - Opened by xleEmesent almost 3 years ago - 6 comments

#78 - Failed to load a mesh with a '.obj' extension.

Issue - State: open - Opened by xleEmesent almost 3 years ago - 2 comments

#77 - Mask context

Pull Request - State: closed - Opened by ceesem almost 3 years ago

#76 - lod and bug fixes

Pull Request - State: closed - Opened by fcollman over 3 years ago

#75 - Add skeleton function for arbitrary cover paths

Pull Request - State: closed - Opened by ceesem over 3 years ago

#74 - optional dependancies to caveclient

Pull Request - State: closed - Opened by fcollman over 3 years ago

#73 - porting to caveclient

Pull Request - State: closed - Opened by fcollman over 3 years ago - 1 comment

#72 - added seg_id and creation_parameters to skeletons

Pull Request - State: closed - Opened by emjoyce over 3 years ago - 1 comment

#71 - Bytes compatible saving csm

Pull Request - State: closed - Opened by ceesem over 3 years ago - 2 comments

#70 - Added creation_parameters and seg_id to skeletons

Pull Request - State: closed - Opened by emjoyce over 3 years ago - 1 comment

#69 - What is the default colormap used by mesh_actor when vertex_colors is a numpy array of len(N)?

Issue - State: open - Opened by molliebernstein over 3 years ago

#68 - Meshwork merge

Pull Request - State: closed - Opened by fcollman almost 4 years ago - 1 comment

#67 - Potential requirement documentation update

Issue - State: open - Opened by markuspleijzier almost 4 years ago

#66 - Skeleton repair

Pull Request - State: closed - Opened by nicholasturner1 over 4 years ago - 1 comment

#65 - Meshwork skel quality

Pull Request - State: closed - Opened by ceesem over 4 years ago

#64 - Decorated meshes

Pull Request - State: closed - Opened by ceesem over 4 years ago - 1 comment

#63 - Building wheel for pykdtree and clang: error: unsupported option '-fopenmp'

Issue - State: open - Opened by AltynR over 4 years ago - 1 comment

#62 - swc export error

Issue - State: open - Opened by zhihaozheng over 4 years ago - 5 comments

#61 - Meshy skeletons

Pull Request - State: closed - Opened by ceesem over 4 years ago

#60 - Fix documentation and missing import statement.

Pull Request - State: closed - Opened by william-silversmith almost 5 years ago - 1 comment

#59 - Resample

Pull Request - State: open - Opened by fcollman almost 5 years ago - 4 comments

#58 - human-readable swc ordering

Pull Request - State: closed - Opened by ceesem almost 5 years ago - 1 comment

#57 - Resolution adjustment

Pull Request - State: closed - Opened by ceesem almost 5 years ago - 1 comment

#56 - bumping cloud volume

Pull Request - State: closed - Opened by fcollman about 5 years ago - 1 comment

#55 - ImportError google.resumable_media.requests'

Issue - State: closed - Opened by dlbrittain about 5 years ago

#54 - Movie improvements

Pull Request - State: closed - Opened by fcollman about 5 years ago - 2 comments

#53 - fixes precomputed mesh getting with catch for dictionary

Pull Request - State: closed - Opened by fcollman about 5 years ago - 2 comments

#52 - adding a colormapping function

Pull Request - State: closed - Opened by fcollman about 5 years ago - 1 comment

#51 - Bug fixes for downloading from graphene sources.

Pull Request - State: closed - Opened by ntabris about 5 years ago - 2 comments

#50 - _download_meshes_thread_graphene bug with cv.mesh.get

Issue - State: closed - Opened by ntabris about 5 years ago

#49 - _download_meshes_thread_graphene api doesn't match call

Issue - State: closed - Opened by ntabris about 5 years ago

#48 - fix color and opacity bug in point cloud actor

Pull Request - State: closed - Opened by ceesem about 5 years ago - 3 comments

#47 - Fix downloads

Pull Request - State: closed - Opened by ceesem about 5 years ago - 5 comments

#46 - functions for making movies in vtk

Pull Request - State: closed - Opened by fcollman about 5 years ago - 1 comment

#45 - trimesh_io crashes on Import for Mac OS

Issue - State: closed - Opened by william-silversmith about 5 years ago - 6 comments

#44 - Vtk scale bars

Pull Request - State: closed - Opened by fcollman about 5 years ago - 2 comments

#43 - more docs

Pull Request - State: closed - Opened by fcollman about 5 years ago - 1 comment

#42 - cloudvolume dict to object fix

Pull Request - State: closed - Opened by fcollman about 5 years ago - 1 comment

#41 - perf: use CloudVolume multithreaded mesh download

Pull Request - State: closed - Opened by william-silversmith about 5 years ago - 3 comments

#40 - perf: Mesh Download Multithreading

Issue - State: closed - Opened by william-silversmith about 5 years ago

#39 - AnnotatedMesh object

Issue - State: open - Opened by fcollman about 5 years ago - 1 comment
Labels: enhancement

#38 - Mask assertions

Pull Request - State: closed - Opened by fcollman about 5 years ago - 1 comment

#37 - filter_spatial_distance_from_points unhelpful behavior

Issue - State: closed - Opened by fcollman about 5 years ago - 1 comment

#36 - fly forward function

Issue - State: open - Opened by fcollman about 5 years ago

#35 - adding meshskelutils.py

Pull Request - State: closed - Opened by sharmishtaa about 5 years ago - 2 comments

#34 - documentation improvements and readthedocs

Pull Request - State: closed - Opened by fcollman about 5 years ago - 1 comment

#33 - Interoperability with PyVista

Issue - State: open - Opened by banesullivan over 5 years ago - 1 comment

#32 - Documentation?

Issue - State: closed - Opened by banesullivan over 5 years ago - 3 comments

#31 - moving assert to allow for no cv_path but disk cached meshes

Pull Request - State: closed - Opened by fcollman over 5 years ago - 1 comment

#30 - Fix mesh csgraph distances

Pull Request - State: closed - Opened by ceesem over 5 years ago - 5 comments

#29 - adding remove_duplicate_vertices

Pull Request - State: closed - Opened by fcollman over 5 years ago

#28 - fixed indexing issues with masked meshes

Pull Request - State: closed - Opened by ceesem over 5 years ago - 4 comments

#27 - updating dependancies

Pull Request - State: closed - Opened by fcollman over 5 years ago

#26 - mask csgraph bug

Issue - State: closed - Opened by fcollman over 5 years ago - 1 comment

#25 - fixing bug with perfect matching of merge_edges

Pull Request - State: closed - Opened by fcollman over 5 years ago - 1 comment

#24 - Skeleton segments

Pull Request - State: closed - Opened by ceesem over 5 years ago - 3 comments

#23 - Dynamic links with GPLv3 software

Issue - State: closed - Opened by banesullivan over 5 years ago - 7 comments

#22 - MeshParty1.0

Pull Request - State: closed - Opened by fcollman over 5 years ago - 1 comment

#21 - Vtk skeleton refactor

Pull Request - State: closed - Opened by fcollman over 5 years ago - 7 comments

#20 - Skeleton and masked mesh IO

Pull Request - State: closed - Opened by ceesem over 5 years ago - 3 comments

#19 - Vtk camera fix

Pull Request - State: closed - Opened by fcollman over 5 years ago - 1 comment

#18 - remove pyassimp dependency

Pull Request - State: closed - Opened by RussTorres over 5 years ago - 1 comment

#17 - adding more tests to meshparty

Pull Request - State: closed - Opened by fcollman over 5 years ago - 1 comment

#16 - Create LICENSE

Pull Request - State: closed - Opened by sdorkenw over 5 years ago

#15 - Mesh Index-preserving Skeletonization and Masked Meshes

Pull Request - State: closed - Opened by ceesem over 5 years ago - 4 comments

#14 - Filtered mesh

Pull Request - State: closed - Opened by ceesem over 5 years ago

#13 - fix_mesh tests and fix broken pymeshfix interface

Pull Request - State: closed - Opened by RussTorres almost 6 years ago - 6 comments

#12 - test trimesh_io: add example coveragerc, conftest, trimesh tests

Pull Request - State: closed - Opened by RussTorres almost 6 years ago - 1 comment

#11 - Test infrastructure

Pull Request - State: closed - Opened by fcollman almost 6 years ago - 2 comments

#10 - Cloud volume graphene

Pull Request - State: closed - Opened by fcollman almost 6 years ago - 1 comment

#9 - Gs to https remap

Pull Request - State: closed - Opened by ceesem almost 6 years ago

#8 - Cloud volume graphene

Pull Request - State: closed - Opened by fcollman almost 6 years ago

#7 - Skeleton class

Pull Request - State: closed - Opened by ceesem almost 6 years ago

#6 - a couple installation bugs

Issue - State: closed - Opened by gkocker almost 6 years ago - 4 comments

#5 - Filter shapes

Pull Request - State: closed - Opened by fcollman almost 6 years ago

#4 - adding vtk cross section and steiner mst tree capability

Pull Request - State: closed - Opened by fcollman almost 6 years ago - 1 comment

#3 - minor fixes for mesh_edges

Pull Request - State: closed - Opened by sdorkenw almost 6 years ago

GitHub / sdorkenw/MeshParty issues and pull requests