Ecosyste.ms: Issues

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GitHub / sd2e/opil issues and pull requests

#100 - Represent control using opil

Issue - State: open - Opened by tramyn about 4 years ago - 1 comment
Labels: enhancement, highest priority, medium priority

#100 - Represent control using opil

Issue - State: open - Opened by tramyn about 4 years ago - 1 comment
Labels: enhancement, highest priority, medium priority

#99 - Fix #91

Pull Request - State: closed - Opened by bbartley about 4 years ago

#99 - Fix #91

Pull Request - State: closed - Opened by bbartley about 4 years ago

#98 - Fix #92

Pull Request - State: closed - Opened by bbartley about 4 years ago

#98 - Fix #92

Pull Request - State: closed - Opened by bbartley about 4 years ago

#97 - 93 fix key error

Pull Request - State: closed - Opened by bbartley about 4 years ago

#97 - 93 fix key error

Pull Request - State: closed - Opened by bbartley about 4 years ago

#96 - OPIL code completion not working in VS Code

Issue - State: open - Opened by bjkeller about 4 years ago - 7 comments

#96 - OPIL code completion not working in VS Code

Issue - State: open - Opened by bjkeller about 4 years ago - 7 comments

#95 - 81 validate required parameters

Pull Request - State: closed - Opened by bbartley about 4 years ago

#95 - 81 validate required parameters

Pull Request - State: closed - Opened by bbartley about 4 years ago

#94 - Consider adding property super types for cardinality

Issue - State: open - Opened by bbartley about 4 years ago

#94 - Consider adding property super types for cardinality

Issue - State: open - Opened by bbartley about 4 years ago

#93 - KeyError when calling generate_opil_from_strateos for CellFreeBioSwitches

Issue - State: closed - Opened by tramyn about 4 years ago - 2 comments

#93 - KeyError when calling generate_opil_from_strateos for CellFreeBioSwitches

Issue - State: closed - Opened by tramyn about 4 years ago - 2 comments

#92 - Create an opil.Measure

Issue - State: closed - Opened by tramyn about 4 years ago

#92 - Create an opil.Measure

Issue - State: closed - Opened by tramyn about 4 years ago

#90 - Change name parameters to identity to conform with new sbol3 API

Pull Request - State: closed - Opened by bbartley about 4 years ago

#90 - Change name parameters to identity to conform with new sbol3 API

Pull Request - State: closed - Opened by bbartley about 4 years ago

#88 - How to annotate whole-sample values?

Issue - State: open - Opened by jakebeal about 4 years ago

#88 - How to annotate whole-sample values?

Issue - State: open - Opened by jakebeal about 4 years ago

#87 - Representing controls

Issue - State: open - Opened by jakebeal about 4 years ago - 3 comments

#87 - Representing controls

Issue - State: open - Opened by jakebeal about 4 years ago - 3 comments

#85 - Factor out Strateos-to-OPIL converter into separate repo

Issue - State: open - Opened by bbartley about 4 years ago

#85 - Factor out Strateos-to-OPIL converter into separate repo

Issue - State: open - Opened by bbartley about 4 years ago

#84 - 82 missing fields

Pull Request - State: closed - Opened by bbartley about 4 years ago

#84 - 82 missing fields

Pull Request - State: closed - Opened by bbartley about 4 years ago

#83 - OPIL does not check minimum cardinality

Issue - State: open - Opened by bbartley about 4 years ago

#83 - OPIL does not check minimum cardinality

Issue - State: open - Opened by bbartley about 4 years ago

#82 - Missing type field for Measurement class

Issue - State: closed - Opened by bbartley about 4 years ago - 1 comment

#82 - Missing type field for Measurement class

Issue - State: closed - Opened by bbartley about 4 years ago - 1 comment

#81 - Validate required Parameters using SHACL

Issue - State: open - Opened by bbartley about 4 years ago

#81 - Validate required Parameters using SHACL

Issue - State: open - Opened by bbartley about 4 years ago

#80 - 56 duplicate entries

Pull Request - State: closed - Opened by bbartley about 4 years ago

#80 - 56 duplicate entries

Pull Request - State: closed - Opened by bbartley about 4 years ago

#79 - Upgrade sbol dependency

Pull Request - State: closed - Opened by bbartley about 4 years ago

#79 - Upgrade sbol dependency

Pull Request - State: closed - Opened by bbartley about 4 years ago

#78 - Use OM terms in Strateos to OPIL conversion

Issue - State: open - Opened by bbartley about 4 years ago

#78 - Use OM terms in Strateos to OPIL conversion

Issue - State: open - Opened by bbartley about 4 years ago

#77 - Add strateos:dotname field

Issue - State: closed - Opened by bbartley about 4 years ago

#77 - Add strateos:dotname field

Issue - State: closed - Opened by bbartley about 4 years ago

#76 - Embed options parameters into dotname syntax

Issue - State: closed - Opened by bbartley about 4 years ago

#76 - Embed options parameters into dotname syntax

Issue - State: closed - Opened by bbartley about 4 years ago

#75 - Cardinality on `value` property is incorrect

Issue - State: closed - Opened by bbartley about 4 years ago - 1 comment

#75 - Cardinality on `value` property is incorrect

Issue - State: closed - Opened by bbartley about 4 years ago - 1 comment

#74 - Cardinality on `ParameterValue.value` is incorrect

Issue - State: closed - Opened by bbartley about 4 years ago

#73 - Parameter default_value should be compositional

Issue - State: closed - Opened by bbartley about 4 years ago - 3 comments
Labels: specification

#73 - Parameter default_value should be compositional

Issue - State: closed - Opened by bbartley about 4 years ago - 3 comments
Labels: specification

#72 - Improve SHACL error message

Pull Request - State: closed - Opened by bbartley about 4 years ago

#72 - Improve SHACL error message

Pull Request - State: closed - Opened by bbartley about 4 years ago

#71 - Add additional Strateos schema files to test suite

Pull Request - State: closed - Opened by bbartley about 4 years ago

#71 - Add additional Strateos schema files to test suite

Pull Request - State: closed - Opened by bbartley about 4 years ago

#70 - Fix dropped parameter definitions

Pull Request - State: closed - Opened by bbartley about 4 years ago

#70 - Fix dropped parameter definitions

Pull Request - State: closed - Opened by bbartley about 4 years ago

#69 - Capture description fields from a Strateos schema file

Pull Request - State: closed - Opened by bbartley about 4 years ago

#69 - Capture description fields from a Strateos schema file

Pull Request - State: closed - Opened by bbartley about 4 years ago

#68 - Inherit from SBOL classes

Pull Request - State: closed - Opened by bbartley about 4 years ago

#68 - Inherit from SBOL classes

Pull Request - State: closed - Opened by bbartley about 4 years ago

#67 - OPIL classes should inherit attributes from SBOL superclasses

Issue - State: closed - Opened by bbartley about 4 years ago

#67 - OPIL classes should inherit attributes from SBOL superclasses

Issue - State: closed - Opened by bbartley about 4 years ago

#66 - Fix defaultValue cardinality

Pull Request - State: closed - Opened by bbartley about 4 years ago

#66 - Fix defaultValue cardinality

Pull Request - State: closed - Opened by bbartley about 4 years ago

#65 - Encode description field from strateos protocols

Issue - State: closed - Opened by tramyn about 4 years ago - 1 comment
Labels: enhancement, highest priority

#65 - Encode description field from strateos protocols

Issue - State: closed - Opened by tramyn about 4 years ago - 1 comment
Labels: enhancement, highest priority

#64 - How to create a sampleSet object

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: enhancement, highest priority

#64 - How to create a sampleSet object

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: enhancement, highest priority

#63 - Update validation error message to be more human readable

Issue - State: open - Opened by tramyn over 4 years ago - 1 comment
Labels: enhancement, highest priority, medium priority

#63 - Update validation error message to be more human readable

Issue - State: open - Opened by tramyn over 4 years ago - 1 comment
Labels: enhancement, highest priority, medium priority

#62 - Create test cases for running OPIL Strateos converter

Issue - State: closed - Opened by tramyn over 4 years ago - 2 comments
Labels: medium priority, lowest priority, test

#62 - Create test cases for running OPIL Strateos converter

Issue - State: closed - Opened by tramyn over 4 years ago - 2 comments
Labels: medium priority, lowest priority, test

#61 - Conversion for GrowthCurve dropping parameter fields

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, highest priority

#61 - Conversion for GrowthCurve dropping parameter fields

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, highest priority

#60 - Unexpected Parameter fields are added when converting Strateos ObstacleCourse Protocol

Issue - State: closed - Opened by tramyn over 4 years ago - 2 comments
Labels: bug, highest priority

#60 - Unexpected Parameter fields are added when converting Strateos ObstacleCourse Protocol

Issue - State: closed - Opened by tramyn over 4 years ago - 2 comments
Labels: bug, highest priority

#59 - Conversion for ObstacleCourse dropping parameter fields

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, highest priority

#59 - Conversion for ObstacleCourse dropping parameter fields

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, highest priority

#58 - Unexpected Parameter fields are added when converting Strateos TimeSeriesHTP Protocol

Issue - State: closed - Opened by tramyn over 4 years ago - 2 comments
Labels: bug, highest priority

#58 - Unexpected Parameter fields are added when converting Strateos TimeSeriesHTP Protocol

Issue - State: closed - Opened by tramyn over 4 years ago - 2 comments
Labels: bug, highest priority

#57 - Conversion for TimeSeriesHTP dropping parameter fields

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, question, highest priority

#57 - Conversion for TimeSeriesHTP dropping parameter fields

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, question, highest priority

#56 - Conversion for TimeSeriesHTP has duplicate entries

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, highest priority

#56 - Conversion for TimeSeriesHTP has duplicate entries

Issue - State: closed - Opened by tramyn over 4 years ago
Labels: bug, highest priority

#55 - Encode Strateos protocol ID when performing opil.parse_strateos_json()

Issue - State: open - Opened by tramyn over 4 years ago
Labels: enhancement

#55 - Encode Strateos protocol ID when performing opil.parse_strateos_json()

Issue - State: open - Opened by tramyn over 4 years ago
Labels: enhancement

#54 - Provide alternative way to get ProtocolInterface from an OPIL Document

Issue - State: open - Opened by tramyn over 4 years ago - 2 comments
Labels: enhancement, medium priority

#54 - Provide alternative way to get ProtocolInterface from an OPIL Document

Issue - State: open - Opened by tramyn over 4 years ago - 2 comments
Labels: enhancement, medium priority

#53 - 49 shacl error

Pull Request - State: closed - Opened by bbartley over 4 years ago

#53 - 49 shacl error

Pull Request - State: closed - Opened by bbartley over 4 years ago

#52 - Provide alternative way to set default_value for a Parameter object

Issue - State: closed - Opened by tramyn over 4 years ago - 4 comments
Labels: documentation, enhancement, highest priority

#52 - Provide alternative way to set default_value for a Parameter object

Issue - State: closed - Opened by tramyn over 4 years ago - 4 comments
Labels: documentation, enhancement, highest priority

#51 - Provide documentation to clarify usage of Parameter types

Issue - State: open - Opened by tramyn over 4 years ago
Labels: documentation, medium priority

#51 - Provide documentation to clarify usage of Parameter types

Issue - State: open - Opened by tramyn over 4 years ago
Labels: documentation, medium priority

#50 - Support clone/copy methods for Parameter objects

Issue - State: closed - Opened by tramyn over 4 years ago - 1 comment
Labels: enhancement, highest priority