Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/spatialdata-plot issues and pull requests

#190 - Avoid dropping rendering commands

Pull Request - State: closed - Opened by aeisenbarth about 1 year ago - 1 comment

#189 - Reproduce Napari visualizations

Issue - State: open - Opened by aeisenbarth about 1 year ago - 3 comments
Labels: enhancement

#188 - Fix passing Colormap objects

Pull Request - State: closed - Opened by aeisenbarth about 1 year ago - 1 comment

#187 - Remove docs dependencies from default install

Pull Request - State: closed - Opened by aeisenbarth about 1 year ago - 2 comments

#186 - Update template to v0.3.0

Pull Request - State: closed - Opened by scverse-bot about 1 year ago - 1 comment

#185 - Added better error message for mismatch in cs and ax number

Pull Request - State: closed - Opened by timtreis about 1 year ago

#184 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#182 - Points transformation ignored

Issue - State: closed - Opened by aeisenbarth about 1 year ago - 1 comment

#181 - remove doc specific deps from requirements

Issue - State: closed - Opened by giovp about 1 year ago - 1 comment

#180 - corrected version number

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago

#179 - updated changelog

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago - 2 comments

#178 - Bug: plotting after sorting a table

Issue - State: open - Opened by LucaMarconato about 1 year ago - 2 comments
Labels: bug

#177 - Bug when plotting shapes after spatial query

Pull Request - State: closed - Opened by Sonja-Stockhaus about 1 year ago - 2 comments

#176 - Can't plot different elements in a specific axes when multiple coordinate systems are available

Issue - State: open - Opened by LucaMarconato about 1 year ago - 1 comment
Labels: bug, stale, priority: low

#175 - unable to plot shapes

Issue - State: closed - Opened by mkunst23 about 1 year ago - 3 comments

#173 - (Optional) fast extent computation for large vector data

Issue - State: open - Opened by LucaMarconato about 1 year ago - 2 comments
Labels: enhancement, priority: low

#172 - Add tests for extent of plots

Issue - State: closed - Opened by LucaMarconato about 1 year ago
Labels: bug, priority: medium

#171 - Points are plotted with the wrong extent

Issue - State: closed - Opened by LucaMarconato about 1 year ago

#170 - TypeError: unhashable type: 'list'

Issue - State: open - Opened by ZhengTiger about 1 year ago - 5 comments
Labels: bug

#169 - Problem with indices vs positional indices in shapes

Issue - State: open - Opened by LucaMarconato about 1 year ago - 6 comments
Labels: bug, priority: high

#167 - `_robust_transform()` after cropping gives problems with images and labels

Issue - State: closed - Opened by LucaMarconato about 1 year ago - 3 comments
Labels: bug

#166 - Cannot plot continuous var values to circles

Issue - State: closed - Opened by LucaMarconato about 1 year ago - 1 comment
Labels: bug

#165 - Cannot plot continuous var values to labels

Issue - State: closed - Opened by LucaMarconato about 1 year ago - 9 comments
Labels: bug, priority: high

#164 - MultiscaleImage handling

Pull Request - State: closed - Opened by Sonja-Stockhaus about 1 year ago - 2 comments

#163 - fix index bug after spatial query

Pull Request - State: closed - Opened by Sonja-Stockhaus about 1 year ago - 8 comments

#162 - Refactored transformations implementation

Pull Request - State: closed - Opened by timtreis about 1 year ago - 1 comment

#155 - Colorbar no longer autoscales to [0, 1]

Pull Request - State: closed - Opened by timtreis about 1 year ago

#154 - Can now filter `render_points` using `groups`

Pull Request - State: closed - Opened by timtreis about 1 year ago - 1 comment

#153 - coloring shapes by categorical variable

Pull Request - State: closed - Opened by Sonja-Stockhaus over 1 year ago - 4 comments

#152 - `render_shapes` now has a `scale` parameter

Pull Request - State: closed - Opened by timtreis over 1 year ago - 3 comments

#151 - size in `render_shapes` is not used

Issue - State: closed - Opened by giovp over 1 year ago - 1 comment

#150 - Images no longer normalised by default

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment

#149 - Can now plot columns from `GeoDataFrame`

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment

#148 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#147 - unexpected behaviour scaling values by default

Issue - State: closed - Opened by giovp over 1 year ago - 2 comments

#146 - Translation and Scale fail when not all the axes are specified

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#145 - palette argument has no effect on plotting colors in pl.render_shapes()

Issue - State: closed - Opened by sopvdl over 1 year ago - 3 comments

#144 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#143 - Legend order is now deterministic

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment
Labels: bug

#142 - Update template to v0.2.22

Pull Request - State: closed - Opened by scverse-bot over 1 year ago - 1 comment

#141 - Update template to v0.2.21

Pull Request - State: closed - Opened by scverse-bot over 1 year ago - 1 comment

#140 - Wrong colormap for H&E

Issue - State: closed - Opened by marcovarrone over 1 year ago - 7 comments

#139 - fix outline width parameter, add unittests

Pull Request - State: closed - Opened by Sonja-Stockhaus over 1 year ago

#138 - Remove `pp` accessor as its functionality is now in `spatialdata`

Issue - State: closed - Opened by timtreis over 1 year ago - 3 comments
Labels: enhancement, housekeeping :broom:, priority: medium

#137 - Shape's outline color from a table column

Issue - State: open - Opened by marcovarrone over 1 year ago - 2 comments
Labels: enhancement, priority: low

#136 - Outline width in render_shapes is ignored

Issue - State: closed - Opened by marcovarrone over 1 year ago - 1 comment
Labels: bug, priority: low

#135 - get_extent now deals with multiscale images/labels

Pull Request - State: closed - Opened by timtreis over 1 year ago

#134 - `get_extent` doesn't respect multi-scale images

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: bug, priority: high

#133 - handle empty points in the image

Pull Request - State: closed - Opened by Sonja-Stockhaus over 1 year ago - 1 comment

#132 - Can't plot non-normalised values as colorbar

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: enhancement

#131 - Fixed multi-scale image/label handling

Pull Request - State: closed - Opened by timtreis over 1 year ago - 2 comments

#130 - Can now plot columns from `GeoDataFrame` [BROKEN]

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment

#129 - `blobs()` example does not work

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: bug

#128 - Reading highly resolved image

Issue - State: closed - Opened by sokratiag over 1 year ago
Labels: bug

#127 - Corrected default 3 channel colormap

Pull Request - State: closed - Opened by timtreis over 1 year ago - 2 comments

#126 - RGB bug with data range (raccoon changed color)

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment
Labels: bug

#125 - fixed links in the docs

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#124 - "Color by column" now works again

Pull Request - State: closed - Opened by timtreis over 1 year ago - 3 comments
Labels: bug

#123 - color argument breaks `pl.render_shapes`

Issue - State: closed - Opened by MobiTobi over 1 year ago
Labels: bug, priority: high

#122 - "color by column" functionality is broken

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: bug

#121 - Documentation out-of-date for some function

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: documentation, priority: medium

#120 - reuse colourmap when plotting a single channel

Issue - State: closed - Opened by MobiTobi over 1 year ago - 1 comment

#119 - Bugfix for `outline` parameter in `render_shapes`

Pull Request - State: closed - Opened by timtreis over 1 year ago - 2 comments

#118 - made render_images more robust to channel/cmap choices

Pull Request - State: closed - Opened by timtreis over 1 year ago - 8 comments
Labels: bug

#115 - cmap argument without effect

Issue - State: closed - Opened by MobiTobi over 1 year ago - 1 comment

#114 - add build system and fix version

Pull Request - State: closed - Opened by giovp over 1 year ago - 1 comment

#113 - dev install has wrong version

Issue - State: closed - Opened by giovp over 1 year ago

#112 - extent fails on shapes circles

Issue - State: closed - Opened by giovp over 1 year ago - 8 comments
Labels: needs info, priority: medium

#111 - render_images now respects cmap when channels are used

Pull Request - State: closed - Opened by timtreis over 1 year ago

#109 - `groups` still available for `render_points()`?

Issue - State: closed - Opened by LucaMarconato over 1 year ago
Labels: enhancement, priority: low

#108 - `outline_color` doesn't work(?)

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment
Labels: bug, priority: low

#107 - Alpha is ignored for shapes

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 2 comments

#106 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#105 - Cannot plot values from the columns of a `GeoDataFrame`

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 5 comments
Labels: enhancement, priority: low

#104 - Legend coloring doesn't match with plot in `render_shapes`

Issue - State: closed - Opened by timtreis over 1 year ago - 1 comment
Labels: bug, priority: high

#103 - Wrong spatialplot of Affine Transformation

Issue - State: closed - Opened by jefferyUstc over 1 year ago - 1 comment
Labels: bug, priority: high

#102 - ruff fixes

Pull Request - State: closed - Opened by timtreis over 1 year ago

#101 - Fixed bug because of which extent of previous axs was not respected

Pull Request - State: closed - Opened by timtreis over 1 year ago - 5 comments
Labels: bug

#100 - `get_extent` produces wrong output after spatial query

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: bug

#99 - Adding a few e2e tests

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment

#98 - Closes issue 69

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment

#97 - Revert "Closing issue 69"

Pull Request - State: closed - Opened by timtreis over 1 year ago

#96 - plot multiscale images

Issue - State: closed - Opened by kevinyamauchi over 1 year ago - 4 comments
Labels: enhancement, priority: low

#95 - Fix Github actions

Pull Request - State: closed - Opened by timtreis over 1 year ago

#94 - `utils.py` -> MatplotlibDeprecationWarning

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: housekeeping

#93 - Support `MultiPolygons` in `render_shapes()`

Pull Request - State: closed - Opened by timtreis over 1 year ago - 5 comments
Labels: enhancement

#92 - Named channel rendering not working

Issue - State: closed - Opened by berombau over 1 year ago - 5 comments
Labels: bug

#91 - Closing issue 69

Pull Request - State: closed - Opened by timtreis over 1 year ago
Labels: enhancement

#90 - Closing issue 76

Pull Request - State: closed - Opened by timtreis over 1 year ago
Labels: bug

#89 - Closing issues 88, 83, 76, 75,

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment
Labels: bug

#88 - `get_extent` is inaccurate

Issue - State: closed - Opened by timtreis over 1 year ago
Labels: bug

#87 - Closing issue 83

Pull Request - State: closed - Opened by timtreis over 1 year ago
Labels: bug

#86 - Closing issue 75

Pull Request - State: closed - Opened by timtreis over 1 year ago
Labels: bug

#85 - Adds `transfunc` parameter to optionally transform continuous values when coloring

Pull Request - State: closed - Opened by timtreis over 1 year ago - 1 comment
Labels: enhancement