Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/spatialdata-plot issues and pull requests

#277 - Adjusts spatialdata-plot to use DataArray and DataTree

Pull Request - State: closed - Opened by melonora 5 months ago - 1 comment

#276 - TypeError while coloring a variable with missing values.

Issue - State: closed - Opened by sinanugur 5 months ago - 1 comment

#275 - Fix transformed labels with outline

Pull Request - State: open - Opened by aeisenbarth 5 months ago - 4 comments
Labels: bug, priority: medium, labels :label:

#274 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 1 comment

#273 - Label outlines cause wrong transformation

Issue - State: closed - Opened by aeisenbarth 5 months ago - 2 comments

#272 - Adjust labels params

Pull Request - State: closed - Opened by melonora 6 months ago - 1 comment

#271 - Adjust points params

Pull Request - State: closed - Opened by melonora 6 months ago - 1 comment

#270 - Adjust shapes params

Pull Request - State: closed - Opened by melonora 6 months ago - 2 comments

#269 - Custom title when multiple coordinate system present and no coordinate system specified

Issue - State: open - Opened by LucaMarconato 6 months ago - 1 comment
Labels: enhancement, priority: medium

#268 - `table_name` not automatically inferred

Issue - State: closed - Opened by LucaMarconato 6 months ago - 3 comments

#267 - Image render param refactor

Pull Request - State: closed - Opened by melonora 6 months ago - 2 comments

#266 - Cannot plot table on shapes when lengths differ

Issue - State: open - Opened by LucaMarconato 6 months ago - 1 comment

#265 - Cannot plot table annotations for points

Issue - State: open - Opened by LucaMarconato 6 months ago - 1 comment

#264 - fix codecov and precommit

Pull Request - State: closed - Opened by giovp 6 months ago - 1 comment

#263 - Update template to v0.4.0

Pull Request - State: closed - Opened by scverse-bot 6 months ago
Labels: housekeeping :broom:

#262 - Categorical data is now correctly colored in the legend when plotting

Pull Request - State: closed - Opened by timtreis 6 months ago - 2 comments

#261 - Updating link to documentation to correct one

Pull Request - State: closed - Opened by timtreis 6 months ago - 1 comment

#260 - Color order seems non-deterministic

Issue - State: closed - Opened by timtreis 6 months ago - 2 comments

#259 - spring cleaning: incorrect images in visual tests

Issue - State: open - Opened by timtreis 6 months ago
Labels: bug, housekeeping :broom:, priority: high

#258 - Fix tests in main

Pull Request - State: closed - Opened by timtreis 6 months ago - 2 comments

#257 - Fix color assignment for NaN values

Pull Request - State: closed - Opened by marcovarrone 7 months ago

#256 - render_shapes fails on categorical with NaNs

Issue - State: closed - Opened by marcovarrone 7 months ago

#254 - cannot import name ‘get_table_keys’ with version 0.2.1

Issue - State: closed - Opened by Michael-Geuenich 7 months ago - 2 comments

#253 - A couple of fixes to `render_labels`

Pull Request - State: closed - Opened by clwgg 7 months ago

#252 - "Artifact" when plotting labels with `outline=True`

Issue - State: closed - Opened by clwgg 7 months ago - 10 comments
Labels: bug, priority: medium, labels :label:

#251 - render_shapes() - problem with cmap alpha

Issue - State: closed - Opened by roynov01 7 months ago - 5 comments
Labels: bug, priority: medium

#250 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#248 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#247 - Add a gene_symbols parameter to `render_shapes` and `render_points`

Issue - State: open - Opened by grst 7 months ago - 2 comments

#246 - Make plotting parameters keyword-only

Issue - State: open - Opened by grst 7 months ago
Labels: enhancement, priority: medium

#245 - _set_color_source_vec and _render_points Refactor

Pull Request - State: open - Opened by dylanclam12 8 months ago - 2 comments
Labels: stale

#244 - Datashader support for points and shapes

Pull Request - State: closed - Opened by LucaMarconato 8 months ago - 5 comments

#243 - basic shapes datashader rendering

Pull Request - State: closed - Opened by ckmah 8 months ago - 1 comment

#242 - modify colormap so that 0 values have alpha=0

Issue - State: closed - Opened by giovp 8 months ago - 9 comments
Labels: enhancement, priority: low

#241 - background label color not respected.

Issue - State: closed - Opened by melonora 8 months ago - 2 comments
Labels: needs info, priority: medium

#240 - fill_alpha of labels not respected when plotting purely outline

Issue - State: closed - Opened by melonora 8 months ago
Labels: bug, priority: medium

#239 - Fix fill alpha ignoring alpha from colormaps

Pull Request - State: closed - Opened by LucaMarconato 8 months ago

#238 - Can't plot table annotations on points

Issue - State: open - Opened by LucaMarconato 8 months ago - 6 comments

#237 - Pass docs

Pull Request - State: closed - Opened by melonora 8 months ago - 2 comments

#236 - Fix var plotting

Pull Request - State: closed - Opened by melonora 8 months ago - 7 comments

#235 - Mypy

Pull Request - State: closed - Opened by melonora 8 months ago - 4 comments

#234 - Plotting var on shapes broken

Issue - State: closed - Opened by LucaMarconato 8 months ago
Labels: priority: high

#233 - Wrong pypi project link

Issue - State: closed - Opened by aeisenbarth 8 months ago - 2 comments

#232 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 1 comment

#231 - Minor fix label outline

Pull Request - State: closed - Opened by melonora 8 months ago - 1 comment

#229 - Fix categorical plotting

Pull Request - State: closed - Opened by melonora 8 months ago - 1 comment

#228 - Plotting categorical variables to shapes stopped working

Issue - State: closed - Opened by LucaMarconato 8 months ago - 1 comment
Labels: bug, priority: high

#227 - fix_col_for_color

Pull Request - State: closed - Opened by melonora 8 months ago

#226 - Fix palette and groups

Pull Request - State: closed - Opened by melonora 8 months ago

#225 - Enabling tests and docs against spatialdata pre-release

Pull Request - State: closed - Opened by LucaMarconato 8 months ago

#224 - Partial fixes mypy

Pull Request - State: closed - Opened by melonora 8 months ago

#223 - Fix mypy

Issue - State: closed - Opened by melonora 8 months ago

#222 - fixed!

Pull Request - State: closed - Opened by melonora 8 months ago

#221 - Fix channel str support

Pull Request - State: closed - Opened by berombau 9 months ago - 2 comments

#220 - allow for plotting using specific table (#217)

Pull Request - State: closed - Opened by melonora 9 months ago

#219 - Update template to v0.3.1

Pull Request - State: closed - Opened by scverse-bot 9 months ago - 4 comments

#218 - allow feature branches tests

Pull Request - State: closed - Opened by melonora 9 months ago - 1 comment

#217 - allow for plotting using specific table

Pull Request - State: closed - Opened by melonora 9 months ago

#216 - Pixel shift in `render_images`

Issue - State: open - Opened by quentinblampey 9 months ago - 1 comment

#215 - Categorical Legend Fix

Pull Request - State: closed - Opened by srivarra 9 months ago - 4 comments

#214 - Categorical Data is incorrectly colored in the legend when plotting

Issue - State: closed - Opened by srivarra 9 months ago
Labels: bug, priority: medium, labels :label:

#213 - Why does the API require repeated `.pl` in a plotting command

Issue - State: closed - Opened by grst 9 months ago - 1 comment

#211 - Plotting color instead of by var in table and alpha not respected

Issue - State: open - Opened by melonora 10 months ago - 2 comments

#210 - Use spaco for picking colors?

Issue - State: open - Opened by timtreis 10 months ago - 3 comments
Labels: enhancement, priority: low

#209 - Use DataShader to speed up rendering of points

Issue - State: closed - Opened by timtreis 10 months ago
Labels: enhancement, priority: medium

#208 - Fix "xarray has no attribute reshape"

Pull Request - State: closed - Opened by aeisenbarth 10 months ago - 3 comments

#207 - Test all label rendering options

Pull Request - State: open - Opened by aeisenbarth 10 months ago

#206 - KeyError when plotting one of multiple labels images with palette

Issue - State: closed - Opened by aeisenbarth 10 months ago - 1 comment

#205 - `get_elements` fails on empty SpatialData

Pull Request - State: closed - Opened by aeisenbarth 10 months ago - 6 comments

#204 - Add example for plotting without axes decorations

Issue - State: open - Opened by aeisenbarth 11 months ago
Labels: enhancement, priority: low

#203 - Multiscale images lose channel names

Issue - State: open - Opened by aeisenbarth 11 months ago - 1 comment

#202 - Can we manually set an outline color for all labels?

Issue - State: open - Opened by timtreis 11 months ago - 3 comments

#201 - Plotting of continuous values when norm=None

Pull Request - State: closed - Opened by Sonja-Stockhaus 11 months ago - 4 comments

#200 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment

#199 - Updated render_shapes doc

Pull Request - State: closed - Opened by timtreis 11 months ago - 1 comment

#198 - Complex testing for correct plotting after applying transformation

Pull Request - State: closed - Opened by timtreis 12 months ago - 1 comment
Labels: bug, priority: high

#197 - add error message for when len(palette)!=len(categories)

Pull Request - State: closed - Opened by Sonja-Stockhaus 12 months ago

#196 - Order of render commands doesn't reflect z-order of elements in plot

Issue - State: closed - Opened by timtreis 12 months ago - 1 comment
Labels: bug, priority: low

#195 - Removes rej files

Pull Request - State: closed - Opened by timtreis 12 months ago - 1 comment

#194 - improved cmap handling for images

Pull Request - State: closed - Opened by Sonja-Stockhaus 12 months ago - 1 comment

#193 - Cannot color shapes by strings

Issue - State: closed - Opened by timtreis 12 months ago - 1 comment

#192 - Allow for stacking of render commands

Pull Request - State: closed - Opened by timtreis 12 months ago - 1 comment
Labels: enhancement

#191 - Cannot stack multiple render commands of the same kind

Issue - State: closed - Opened by timtreis 12 months ago
Labels: bug, enhancement, priority: high

#190 - Avoid dropping rendering commands

Pull Request - State: closed - Opened by aeisenbarth 12 months ago - 1 comment

#189 - Reproduce Napari visualizations

Issue - State: open - Opened by aeisenbarth 12 months ago - 3 comments
Labels: enhancement

#188 - Fix passing Colormap objects

Pull Request - State: closed - Opened by aeisenbarth 12 months ago - 1 comment

#187 - Remove docs dependencies from default install

Pull Request - State: closed - Opened by aeisenbarth 12 months ago - 2 comments

#186 - Update template to v0.3.0

Pull Request - State: closed - Opened by scverse-bot 12 months ago - 1 comment

#185 - Added better error message for mismatch in cs and ax number

Pull Request - State: closed - Opened by timtreis 12 months ago

#184 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 12 months ago - 1 comment

#182 - Points transformation ignored

Issue - State: closed - Opened by aeisenbarth about 1 year ago - 1 comment

#181 - remove doc specific deps from requirements

Issue - State: closed - Opened by giovp about 1 year ago - 1 comment

#180 - corrected version number

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago

#179 - updated changelog

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago - 2 comments

#178 - Bug: plotting after sorting a table

Issue - State: open - Opened by LucaMarconato about 1 year ago - 2 comments
Labels: bug