Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/spatialdata-plot issues and pull requests

#390 - render_labels plots can not show any legend

Issue - State: open - Opened by liuyang2006 13 days ago

#389 - Render_points breaks with scanpy=1.10.4

Issue - State: open - Opened by ckmah 17 days ago - 2 comments

#388 - Vega-like viewconfigurations

Issue - State: open - Opened by melonora 17 days ago - 1 comment

#387 - migrate pre-commit config

Pull Request - State: closed - Opened by melonora 19 days ago

#385 - 3D visualize

Issue - State: open - Opened by Yifan-debug 3 months ago - 3 comments

#384 - Do transformations affect Points?

Issue - State: open - Opened by BaldanMatt 23 days ago

#383 - Migrate GitHub actions to Python 3.10 and 3.12

Issue - State: open - Opened by timtreis 24 days ago
Labels: housekeeping :broom:

#382 - Missing visualizations tutorials in documentation

Issue - State: closed - Opened by ConstensouxAlexis 24 days ago - 1 comment
Labels: documentation, priority: medium

#381 - Transformations with flipped y-axis

Issue - State: open - Opened by Sonja-Stockhaus 25 days ago
Labels: shapes :bubbles:, :speaking_head: discussion

#380 - support for datatree from xarray

Pull Request - State: open - Opened by melonora 25 days ago

#379 - Datashader doesn't speed up rendering of points

Issue - State: open - Opened by timtreis about 1 month ago
Labels: bug, priority: low, points :abacus:

#378 - Transformations are applied before rendering with datashader

Pull Request - State: open - Opened by Sonja-Stockhaus about 1 month ago - 2 comments

#377 - MAYBE: Can we select channels for multi-scale images?

Issue - State: open - Opened by timtreis about 1 month ago - 5 comments
Labels: bug, priority: low, images :framed_picture:

#375 - Error when selecting more than two values in groups for render_shapes()

Issue - State: open - Opened by Zejian-Wang about 1 month ago
Labels: bug, priority: medium, shapes :bubbles:

#373 - `render_labels` returns uniform color in large images

Issue - State: closed - Opened by AdnanAbouelela about 1 month ago - 2 comments

#372 - Missing tests for norm=Normalize(...)

Issue - State: open - Opened by Sonja-Stockhaus about 1 month ago
Labels: bug, documentation

#371 - Image rendering is very slow for xenium morphology image

Issue - State: closed - Opened by tsvvas about 2 months ago - 2 comments

#370 - Q: How to render xenium morphology image with original colors?

Issue - State: open - Opened by tsvvas about 2 months ago - 15 comments
Labels: needs info, priority: low, images :framed_picture:

#369 - Fix validate image parameters method for multiscale images

Pull Request - State: closed - Opened by Sonja-Stockhaus about 2 months ago - 1 comment

#368 - Fix clims when plotting shapes element annotations with matplotlib rendering

Pull Request - State: closed - Opened by melonora about 2 months ago - 4 comments

#367 - Datashader shapes outlines and fill_alpha documentation

Issue - State: open - Opened by Sonja-Stockhaus about 2 months ago - 7 comments
Labels: enhancement, priority: low, shapes :bubbles:

#366 - 'SpatialData' object has no attribute 'pp'

Issue - State: closed - Opened by lg907 about 2 months ago - 2 comments
Labels: bug, documentation, priority: low

#365 - Hiding the colorbar

Issue - State: open - Opened by LucaMarconato 2 months ago

#364 - When multiple categories are plotted, only one legend is shown, and colors do not match

Issue - State: open - Opened by LucaMarconato 2 months ago - 3 comments
Labels: bug, enhancement, priority: medium, labels :label:

#363 - Different plot when running as script vs Jupyter/Console

Issue - State: open - Opened by LucaMarconato 2 months ago
Labels: bug

#362 - Cannot combine shapes and images on the same axes in separate calls.

Issue - State: open - Opened by LucaMarconato 2 months ago
Labels: bug, priority: low

#361 - Discussion: add title to multiple colorbars?

Issue - State: open - Opened by LucaMarconato 2 months ago - 1 comment
Labels: :speaking_head: discussion

#360 - setting `cmap` for multiscale image leads to error

Issue - State: closed - Opened by LucaMarconato 2 months ago - 1 comment
Labels: bug, priority: medium, images :framed_picture:

#359 - Can not display color for render_shapes

Issue - State: open - Opened by Lings01 2 months ago - 1 comment

#358 - Categorical colors wrongly assigned to points

Issue - State: open - Opened by LucaMarconato 2 months ago

#357 - Using groups in pl.render_shapes() fails with large data

Issue - State: open - Opened by ConstensouxAlexis 2 months ago - 2 comments

#356 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 2 months ago - 1 comment

#355 - Categorical color obs column crashes the plotting

Issue - State: open - Opened by sinanugur 3 months ago - 2 comments
Labels: bug, priority: medium, shapes :bubbles:

#354 - Using `cmap`s fails when rendering multiscale images

Issue - State: closed - Opened by gdurif 3 months ago - 4 comments
Labels: bug, priority: medium, images :framed_picture:

#352 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#351 - Interpolation problem for sparse image data?

Issue - State: open - Opened by LucaMarconato 3 months ago

#350 - Enhancement: Rasterization changes the value-range of the image.

Issue - State: open - Opened by timtreis 3 months ago
Labels: enhancement, priority: low

#349 - Refactoring of colorbar logic

Pull Request - State: open - Opened by timtreis 3 months ago - 2 comments

#348 - Enhancement: Make colorbar the same height as the `ax`

Issue - State: open - Opened by timtreis 3 months ago
Labels: enhancement, priority: low

#347 - Updated CHANGELOG for release

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment

#346 - Refactor of `colorbar` and `norm` logic

Pull Request - State: closed - Opened by timtreis 3 months ago - 5 comments

#345 - When subsetting by `groups` in `render_labels`, the non-selected are set to white and not `na_color`

Issue - State: closed - Opened by timtreis 3 months ago
Labels: bug, priority: medium, labels :label:

#344 - Coloring labels by a continuous variable fixed

Pull Request - State: closed - Opened by timtreis 3 months ago - 2 comments

#343 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#342 - Coloring labels by a continuous variable appears to be broken (labels associated with wrong colors)

Issue - State: closed - Opened by clwgg 3 months ago - 1 comment
Labels: bug, priority: high, labels :label:

#341 - hotfix

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment

#340 - Error when `xyz_colors` in `adata.uns` and `na_color` have different formats

Issue - State: closed - Opened by timtreis 3 months ago
Labels: bug, priority: high, labels :label:, tables :spiral_calendar:

#339 - No longer failing when `xyz` is in adata.uns but not `xyz_colors`

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment

#338 - Updated changelog for release

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment

#337 - Points not transformed when `method="datashader"`

Issue - State: open - Opened by clwgg 3 months ago - 5 comments
Labels: bug, priority: medium, points :abacus:

#336 - Refactor of labels logic

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment

#335 - `contour_px` not respected when `outline_alpha` == `fill_alpha`

Issue - State: closed - Opened by timtreis 3 months ago - 1 comment
Labels: bug, invalid, priority: low, labels :label:

#334 - Donut-MultiPolygons are now correctly rendered again

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment

#333 - MultiPolygons with holes are broken

Issue - State: closed - Opened by timtreis 3 months ago
Labels: bug, priority: high, shapes :bubbles:

#332 - Coloring by column fails when key (f.e. `xyz`) is in .uns but not default scanpy color info (`xyz_colors`)

Issue - State: closed - Opened by timtreis 3 months ago
Labels: bug, priority: medium, labels :label:, tables :spiral_calendar:

#331 - String column names in [0, 1] are now no longer interpreted as colors

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment

#330 - Issue of annotations of table

Issue - State: closed - Opened by Nazim0001 8 months ago - 17 comments

#329 - Removed `.pp` accessor

Pull Request - State: closed - Opened by timtreis 3 months ago - 2 comments

#328 - Unable to plot categorical columns

Issue - State: closed - Opened by gboscagli 3 months ago - 15 comments

#327 - If an obs column name is 0 or 1, they are not displayed by pl.render_shapes method

Issue - State: closed - Opened by sinanugur 3 months ago - 9 comments
Labels: bug, priority: low, shapes :bubbles:

#326 - Cannot pass `layer ` selection of anndata

Issue - State: open - Opened by wangjiawen2013 4 months ago - 2 comments
Labels: enhancement, priority: high, tables :spiral_calendar:

#325 - Bug in the MERFISH Technology tutorial

Issue - State: open - Opened by Marius1311 4 months ago - 1 comment

#324 - Unable to set vmin vmax when plotting vector data

Issue - State: closed - Opened by wangjiawen2013 4 months ago - 25 comments
Labels: bug, shapes :bubbles:

#323 - Categorical data is now correctly colored in the legend when plotting v2

Pull Request - State: closed - Opened by timtreis 4 months ago - 1 comment

#321 - Plotting multiple genes

Issue - State: open - Opened by wangjiawen2013 4 months ago - 2 comments
Labels: enhancement, needs info, priority: low, :speaking_head: discussion

#320 - sdata.pl.render_points() works weird

Issue - State: closed - Opened by wangjiawen2013 4 months ago - 2 comments

#319 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago

#318 - legend height cannot be adjusted

Issue - State: open - Opened by wangjiawen2013 4 months ago
Labels: enhancement, priority: low

#317 - figures sharpness

Issue - State: open - Opened by wangjiawen2013 4 months ago - 10 comments
Labels: :speaking_head: discussion

#315 - Point sizes disagree between matplotlib and datashader

Issue - State: closed - Opened by Sonja-Stockhaus 4 months ago - 4 comments
Labels: bug

#314 - Datashader aggregation function can't be specified by user

Issue - State: closed - Opened by Sonja-Stockhaus 4 months ago
Labels: enhancement

#313 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 1 comment

#312 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 1 comment

#311 - Wrong colors when using `method='datashader'`

Issue - State: closed - Opened by LucaMarconato 4 months ago - 4 comments
Labels: bug, priority: medium, shapes :bubbles:

#310 - Different plot if specifying `dpi=` in `plt.figure()` vs in `pl.show()`

Issue - State: open - Opened by LucaMarconato 4 months ago - 2 comments
Labels: priority: low

#309 - datashader speedup and bugfixes

Pull Request - State: closed - Opened by Sonja-Stockhaus 5 months ago - 16 comments
Labels: bug, priority: high, points :abacus:, shapes :bubbles:

#308 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 1 comment

#307 - Fix setting vmin vmax

Pull Request - State: closed - Opened by melonora 5 months ago - 5 comments

#306 - Took RNG out of categorical label test

Pull Request - State: closed - Opened by timtreis 5 months ago - 1 comment
Labels: bug, priority: low, labels :label:

#305 - Added error handling for non-existent elements

Pull Request - State: closed - Opened by timtreis 5 months ago - 1 comment
Labels: bug, housekeeping :broom:, priority: low

#304 - Colorbar not shown for image

Issue - State: closed - Opened by LucaMarconato 5 months ago - 3 comments
Labels: needs info, priority: medium, images :framed_picture:

#303 - Unable to set vmin and vmax when plotting raster data

Issue - State: closed - Opened by LucaMarconato 5 months ago - 3 comments
Labels: bug, priority: medium, images :framed_picture:

#302 - Added utils function for 0-transparent cmaps

Pull Request - State: closed - Opened by timtreis 5 months ago - 5 comments
Labels: enhancement, priority: low, utils :wrench:

#301 - fix scale=full previously ignored for data array

Pull Request - State: closed - Opened by LucaMarconato 5 months ago

#300 - `scale='full'` ignored for `xarray.DataArray`

Issue - State: closed - Opened by LucaMarconato 5 months ago

#299 - Bug when trying to plot Visium HD bins as points

Issue - State: open - Opened by LucaMarconato 5 months ago - 1 comment

#298 - fix performance bug shapes

Pull Request - State: closed - Opened by LucaMarconato 5 months ago - 1 comment

#297 - Drastic decrease in performance for matplotlib plotting

Issue - State: closed - Opened by LucaMarconato 5 months ago - 3 comments

#296 - Worse performance using datashader?

Issue - State: closed - Opened by LucaMarconato 5 months ago - 6 comments
Labels: bug, priority: medium, images :framed_picture:, labels :label:, points :abacus:

#295 - Added benchmarks for plots

Pull Request - State: closed - Opened by LucaMarconato 5 months ago - 5 comments
Labels: enhancement, housekeeping :broom:

#294 - `KeyError` not raised when element is not present, for labels, points and shapes

Issue - State: closed - Opened by LucaMarconato 5 months ago
Labels: bug, priority: low

#293 - fix buffer points

Pull Request - State: closed - Opened by LucaMarconato 5 months ago - 1 comment