Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/spatialdata-plot issues and pull requests

#355 - Categorical color obs column crashes the plotting

Issue - State: open - Opened by sinanugur 17 days ago
Labels: bug, priority: medium, shapes :bubbles:

#354 - Using `cmap`s fails when rendering multiscale images

Issue - State: open - Opened by gdurif 19 days ago - 4 comments
Labels: bug, priority: medium, images :framed_picture:

#352 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 20 days ago - 1 comment

#351 - Interpolation problem for sparse image data?

Issue - State: open - Opened by LucaMarconato 21 days ago

#350 - Enhancement: Rasterization changes the value-range of the image.

Issue - State: open - Opened by timtreis 25 days ago
Labels: enhancement, priority: low

#349 - Colorbar is now the same height as the `ax` object

Pull Request - State: open - Opened by timtreis 25 days ago - 1 comment

#348 - Enhancement: Make colorbar the same height as the `ax`

Issue - State: open - Opened by timtreis 25 days ago
Labels: enhancement, priority: low

#347 - Updated CHANGELOG for release

Pull Request - State: closed - Opened by timtreis 25 days ago - 1 comment

#346 - Refactor of `colorbar` and `norm` logic

Pull Request - State: closed - Opened by timtreis 25 days ago - 5 comments

#345 - When subsetting by `groups` in `render_labels`, the non-selected are set to white and not `na_color`

Issue - State: closed - Opened by timtreis 26 days ago
Labels: bug, priority: medium, labels :label:

#344 - Coloring labels by a continuous variable fixed

Pull Request - State: closed - Opened by timtreis 26 days ago - 2 comments

#343 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 27 days ago - 1 comment

#342 - Coloring labels by a continuous variable appears to be broken (labels associated with wrong colors)

Issue - State: closed - Opened by clwgg 28 days ago - 1 comment
Labels: bug, priority: high, labels :label:

#341 - hotfix

Pull Request - State: closed - Opened by timtreis about 1 month ago - 1 comment

#340 - Error when `xyz_colors` in `adata.uns` and `na_color` have different formats

Issue - State: closed - Opened by timtreis about 1 month ago
Labels: bug, priority: high, labels :label:, tables :spiral_calendar:

#339 - No longer failing when `xyz` is in adata.uns but not `xyz_colors`

Pull Request - State: closed - Opened by timtreis about 1 month ago - 1 comment

#338 - Updated changelog for release

Pull Request - State: closed - Opened by timtreis about 1 month ago - 1 comment

#337 - Points not transformed when `method="datashader"`

Issue - State: open - Opened by clwgg about 1 month ago - 2 comments
Labels: bug, priority: medium, points :abacus:

#336 - Refactor of labels logic

Pull Request - State: closed - Opened by timtreis about 1 month ago - 1 comment

#335 - `contour_px` not respected when `outline_alpha` == `fill_alpha`

Issue - State: closed - Opened by timtreis about 1 month ago - 1 comment
Labels: bug, invalid, priority: low, labels :label:

#334 - Donut-MultiPolygons are now correctly rendered again

Pull Request - State: closed - Opened by timtreis about 1 month ago - 1 comment

#333 - MultiPolygons with holes are broken

Issue - State: closed - Opened by timtreis about 1 month ago
Labels: bug, priority: high, shapes :bubbles:

#332 - Coloring by column fails when key (f.e. `xyz`) is in .uns but not default scanpy color info (`xyz_colors`)

Issue - State: closed - Opened by timtreis about 1 month ago
Labels: bug, priority: medium, labels :label:, tables :spiral_calendar:

#331 - String column names in [0, 1] are now no longer interpreted as colors

Pull Request - State: closed - Opened by timtreis about 1 month ago - 1 comment

#330 - Issue of annotations of table

Issue - State: closed - Opened by Nazim0001 6 months ago - 17 comments

#329 - Removed `.pp` accessor

Pull Request - State: closed - Opened by timtreis about 1 month ago - 2 comments

#328 - Unable to plot categorical columns

Issue - State: closed - Opened by gboscagli about 1 month ago - 15 comments

#327 - If an obs column name is 0 or 1, they are not displayed by pl.render_shapes method

Issue - State: closed - Opened by sinanugur about 1 month ago - 9 comments
Labels: bug, priority: low, shapes :bubbles:

#326 - scaled data, normalized data and raw counts

Issue - State: open - Opened by wangjiawen2013 about 1 month ago - 2 comments
Labels: enhancement, priority: high, tables :spiral_calendar:

#325 - Bug in the MERFISH Technology tutorial

Issue - State: open - Opened by Marius1311 about 1 month ago - 1 comment

#324 - Unable to set vmin vmax when plotting vector data

Issue - State: open - Opened by wangjiawen2013 about 1 month ago - 17 comments
Labels: bug, shapes :bubbles:

#323 - Categorical data is now correctly colored in the legend when plotting v2

Pull Request - State: closed - Opened by timtreis about 2 months ago - 1 comment

#321 - Plotting multiple genes

Issue - State: open - Opened by wangjiawen2013 about 2 months ago - 2 comments
Labels: enhancement, needs info, priority: low, :speaking_head: discussion

#320 - sdata.pl.render_points() works weird

Issue - State: closed - Opened by wangjiawen2013 about 2 months ago - 2 comments

#319 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago

#318 - legend height

Issue - State: open - Opened by wangjiawen2013 about 2 months ago
Labels: enhancement, priority: low

#317 - figures sharpness

Issue - State: open - Opened by wangjiawen2013 about 2 months ago - 10 comments
Labels: :speaking_head: discussion

#315 - Point sizes disagree between matplotlib and datashader

Issue - State: open - Opened by Sonja-Stockhaus 2 months ago - 4 comments
Labels: bug

#314 - Datashader aggregation function can't be specified by user

Issue - State: open - Opened by Sonja-Stockhaus 2 months ago
Labels: enhancement

#313 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 1 comment

#312 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 1 comment

#311 - Wrong colors when using `method='datashader'`

Issue - State: open - Opened by LucaMarconato 2 months ago - 4 comments
Labels: bug, priority: medium, shapes :bubbles:

#310 - Different plot if specifying `dpi=` in `plt.figure()` vs in `pl.show()`

Issue - State: open - Opened by LucaMarconato 2 months ago - 2 comments
Labels: priority: low

#309 - datashader speedup and bugfixes

Pull Request - State: open - Opened by Sonja-Stockhaus 2 months ago - 8 comments

#308 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#307 - Fix setting vmin vmax

Pull Request - State: closed - Opened by melonora 3 months ago - 5 comments

#306 - Took RNG out of categorical label test

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment
Labels: bug, priority: low, labels :label:

#305 - Added error handling for non-existent elements

Pull Request - State: closed - Opened by timtreis 3 months ago - 1 comment
Labels: bug, housekeeping :broom:, priority: low

#304 - Colorbar not shown for image

Issue - State: closed - Opened by LucaMarconato 3 months ago - 3 comments
Labels: needs info, priority: medium, images :framed_picture:

#303 - Unable to set vmin and vmax when plotting raster data

Issue - State: closed - Opened by LucaMarconato 3 months ago - 3 comments
Labels: bug, priority: medium, images :framed_picture:

#302 - Added utils function for 0-transparent cmaps

Pull Request - State: closed - Opened by timtreis 3 months ago - 5 comments
Labels: enhancement, priority: low, utils :wrench:

#301 - fix scale=full previously ignored for data array

Pull Request - State: closed - Opened by LucaMarconato 3 months ago

#300 - `scale='full'` ignored for `xarray.DataArray`

Issue - State: closed - Opened by LucaMarconato 3 months ago

#299 - Bug when trying to plot Visium HD bins as points

Issue - State: open - Opened by LucaMarconato 3 months ago - 1 comment

#298 - fix performance bug shapes

Pull Request - State: closed - Opened by LucaMarconato 3 months ago - 1 comment

#297 - Drastic decrease in performance for matplotlib plotting

Issue - State: closed - Opened by LucaMarconato 3 months ago - 3 comments

#296 - Worse performance using datashader?

Issue - State: open - Opened by LucaMarconato 3 months ago - 6 comments
Labels: bug, priority: medium, images :framed_picture:, labels :label:, points :abacus:

#295 - Added benchmarks for plots

Pull Request - State: closed - Opened by LucaMarconato 3 months ago - 5 comments
Labels: enhancement, housekeeping :broom:

#294 - `KeyError` not raised when element is not present, for labels, points and shapes

Issue - State: closed - Opened by LucaMarconato 3 months ago
Labels: bug, priority: low

#293 - fix buffer points

Pull Request - State: closed - Opened by LucaMarconato 3 months ago - 1 comment

#290 - Unknown normalization when rendering crops from spatial samples.

Issue - State: closed - Opened by rushin682 5 months ago - 7 comments
Labels: bug

#289 - Import error in spatialdata_plot

Issue - State: closed - Opened by jnmark 3 months ago - 4 comments
Labels: needs info

#288 - Points are cut of when rendered with datashader and sth with larger extent is rendered afterwards

Issue - State: closed - Opened by Sonja-Stockhaus 3 months ago - 1 comment
Labels: priority: low

#287 - fix tests from modified `get_element_instances`

Pull Request - State: open - Opened by giovp 3 months ago - 13 comments

#286 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#285 - isel when channel is int

Pull Request - State: closed - Opened by melonora 3 months ago

#284 - Extract image RGB information per Visium HD bin

Issue - State: closed - Opened by sunyumail93 3 months ago - 4 comments
Labels: enhancement

#283 - Small fix for supporting the latest dask

Pull Request - State: closed - Opened by LucaMarconato 3 months ago - 1 comment

#282 - use get_element_annotators

Pull Request - State: closed - Opened by melonora 3 months ago

#281 - Fix labels boundaries

Pull Request - State: closed - Opened by melonora 3 months ago

#280 - implement label fix

Pull Request - State: closed - Opened by melonora 3 months ago - 1 comment

#279 - Visium plotting example seems broken on rendered docs

Issue - State: closed - Opened by ivirshup 4 months ago - 4 comments

#278 - pl.render_shapes fail when missing values among category

Issue - State: closed - Opened by sinanugur 3 months ago - 3 comments
Labels: bug

#277 - Adjusts spatialdata-plot to use DataArray and DataTree

Pull Request - State: closed - Opened by melonora 3 months ago - 1 comment

#276 - TypeError while coloring a variable with missing values.

Issue - State: closed - Opened by sinanugur 4 months ago - 1 comment

#275 - Fix transformed labels with outline

Pull Request - State: open - Opened by aeisenbarth 4 months ago - 4 comments
Labels: bug, priority: medium, labels :label:

#274 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 1 comment

#273 - Label outlines cause wrong transformation

Issue - State: closed - Opened by aeisenbarth 4 months ago - 2 comments

#272 - Adjust labels params

Pull Request - State: closed - Opened by melonora 4 months ago - 1 comment

#271 - Adjust points params

Pull Request - State: closed - Opened by melonora 4 months ago - 1 comment

#270 - Adjust shapes params

Pull Request - State: closed - Opened by melonora 4 months ago - 2 comments

#269 - Custom title when multiple coordinate system present and no coordinate system specified

Issue - State: open - Opened by LucaMarconato 4 months ago - 1 comment
Labels: enhancement, priority: medium

#268 - `table_name` not automatically inferred

Issue - State: closed - Opened by LucaMarconato 4 months ago - 3 comments

#267 - Image render param refactor

Pull Request - State: closed - Opened by melonora 4 months ago - 2 comments

#266 - Cannot plot table on shapes when lengths differ

Issue - State: open - Opened by LucaMarconato 4 months ago - 1 comment

#265 - Cannot plot table annotations for points

Issue - State: open - Opened by LucaMarconato 4 months ago - 1 comment

#264 - fix codecov and precommit

Pull Request - State: closed - Opened by giovp 4 months ago - 1 comment

#263 - Update template to v0.4.0

Pull Request - State: closed - Opened by scverse-bot 4 months ago
Labels: housekeeping :broom:

#262 - Categorical data is now correctly colored in the legend when plotting

Pull Request - State: closed - Opened by timtreis 5 months ago - 2 comments

#261 - Updating link to documentation to correct one

Pull Request - State: closed - Opened by timtreis 5 months ago - 1 comment

#260 - Color order seems non-deterministic

Issue - State: closed - Opened by timtreis 5 months ago - 2 comments

#259 - spring cleaning: incorrect images in visual tests

Issue - State: open - Opened by timtreis 5 months ago
Labels: bug, housekeeping :broom:, priority: high

#258 - Fix tests in main

Pull Request - State: closed - Opened by timtreis 5 months ago - 2 comments

#257 - Fix color assignment for NaN values

Pull Request - State: closed - Opened by marcovarrone 5 months ago

#256 - render_shapes fails on categorical with NaNs

Issue - State: closed - Opened by marcovarrone 5 months ago