Data

Tools

Indexes

Applications

Experiments

Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/spatialdata-plot issues and pull requests

#474 - add `shapes` parameter to render shapes as hex/circle/square

Pull Request - State: open - Opened by Sonja-Stockhaus about 1 month ago - 1 comment

#473 - `scale` parameter for shapes has no impact on polygons with datashader

Issue - State: open - Opened by Sonja-Stockhaus about 1 month ago
Labels: bug, priority: low, shapes :bubbles:

#472 - make outline behavior more similar to squidpy

Pull Request - State: open - Opened by Sonja-Stockhaus about 1 month ago - 3 comments

#471 - fix image rendering (clipping warning)

Pull Request - State: open - Opened by Sonja-Stockhaus about 2 months ago - 2 comments

#469 - Coloring by AnnData in `render_labels` is insanely slow

Issue - State: open - Opened by timtreis 2 months ago - 1 comment
Labels: bug, labels :label:

#468 - Logger should mention from which function it's triggered

Issue - State: open - Opened by timtreis 2 months ago - 1 comment
Labels: enhancement, :speaking_head: discussion

#467 - No warning when the manually specified table doesn't actually annotate the labels element

Issue - State: open - Opened by timtreis 2 months ago - 1 comment
Labels: enhancement, labels :label:

#466 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 2 months ago - 1 comment

#465 - fix #464

Pull Request - State: open - Opened by sophiamaedler 2 months ago - 1 comment

#463 - Adding plotting specific documentation

Issue - State: open - Opened by LucaMarconato 3 months ago
Labels: documentation, spatialproteomics

#462 - Ability to change color of the border of labels

Issue - State: open - Opened by LucaMarconato 3 months ago - 1 comment
Labels: spatialproteomics

#461 - Color leak when `outline_alpha=1` and `full_alpha=0`

Issue - State: open - Opened by LucaMarconato 3 months ago - 1 comment
Labels: spatialproteomics

#460 - Document how to perform on-the-fly normalization for channels.

Issue - State: open - Opened by LucaMarconato 3 months ago - 1 comment
Labels: spatialproteomics

#459 - Showing legend by defaults and allowing richer customizability

Issue - State: open - Opened by LucaMarconato 3 months ago - 1 comment
Labels: spatialproteomics

#458 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#456 - Fix render_labels color parameter KeyError

Pull Request - State: open - Opened by timtreis 3 months ago

#454 - fix typo

Pull Request - State: closed - Opened by Zethson 3 months ago - 1 comment

#453 - pl.render_labels can not color cell type annotation

Issue - State: open - Opened by liuyang2006 3 months ago - 1 comment

#452 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#451 - Fix multi-channel handling

Pull Request - State: open - Opened by timtreis 3 months ago - 4 comments

#449 - Feature: datashader also for images

Issue - State: open - Opened by LucaMarconato 3 months ago - 1 comment
Labels: enhancement

#448 - fix docs

Pull Request - State: closed - Opened by LucaMarconato 3 months ago - 1 comment
Labels: release-ignore

#446 - Fix but `render_shapes()` when coordinate system "global" not present

Pull Request - State: closed - Opened by melonora 3 months ago - 1 comment
Labels: release-fixed

#444 - plot continous column render labels

Pull Request - State: closed - Opened by ArneDefauw 4 months ago - 4 comments

#443 - plot continous column render labels

Issue - State: closed - Opened by ArneDefauw 4 months ago

#442 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 1 comment

#440 - Update template to v0.5.0

Pull Request - State: open - Opened by scverse-bot 4 months ago

#438 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 1 comment

#437 - Updata on plotting categories clusters.

Issue - State: closed - Opened by christophechu 4 months ago - 1 comment

#436 - render_shapes now respects the cmap parameter

Pull Request - State: closed - Opened by timtreis 4 months ago - 1 comment

#435 - cmap parameter ignored for render_shapes

Issue - State: closed - Opened by timtreis 4 months ago - 1 comment
Labels: bug, priority: medium, shapes :bubbles:, release-fixed

#434 - Modernize ci setup

Pull Request - State: closed - Opened by Zethson 4 months ago - 1 comment
Labels: release-changed

#433 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 1 comment

#432 - Fix unused cmap in render_points

Pull Request - State: closed - Opened by melonora 4 months ago - 1 comment
Labels: release-fixed

#431 - Multiple colorbars on global coordinate system

Issue - State: open - Opened by StevenWijnen 4 months ago

#430 - Handling Annotations from QuPath

Issue - State: open - Opened by rushin682 4 months ago - 1 comment

#429 - irregular chunking

Issue - State: open - Opened by Lem-P 5 months ago - 5 comments

#428 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 1 comment

#427 - nan handling for continuous and categorical coloring

Pull Request - State: open - Opened by Sonja-Stockhaus 5 months ago - 1 comment

#426 - Generating and saving view configs from tests

Pull Request - State: closed - Opened by LucaMarconato 5 months ago

#425 - Render shapes fails for categoricals of different length across coordinate systems

Issue - State: open - Opened by Marius1311 5 months ago
Labels: bug, priority: medium, shapes :bubbles:

#424 - Simplify affine matrix calculation for datashader

Pull Request - State: open - Opened by LucaMarconato 5 months ago - 1 comment

#423 - Fix color type hex colors

Pull Request - State: open - Opened by LucaMarconato 5 months ago

#422 - Really hard to plot categories palette....

Issue - State: closed - Opened by christophechu 6 months ago - 2 comments

#421 - Review 2 filter PRs

Issue - State: closed - Opened by LucaMarconato 6 months ago

#419 - Fix norm behavior, add tests

Pull Request - State: closed - Opened by Sonja-Stockhaus 6 months ago - 2 comments
Labels: release-fixed

#417 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#416 - Clipping warning when plotting images

Issue - State: open - Opened by LucaMarconato 6 months ago - 2 comments
Labels: spatialproteomics

#415 - Performance issue when plotting spatialdata object with many samples

Issue - State: open - Opened by grst 6 months ago - 2 comments

#414 - Plot categorical color when colors are provided via .uns

Issue - State: open - Opened by ArneDefauw 6 months ago - 1 comment

#413 - fix table name and add unit test for colors passed via .uns

Pull Request - State: open - Opened by ArneDefauw 6 months ago - 7 comments
Labels: priority: medium, labels :label:

#412 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#411 - Naming restrictions false positive?

Issue - State: closed - Opened by Zethson 6 months ago - 3 comments

#410 - ValueError: Transformation to global not found in element

Issue - State: open - Opened by sunshx-bioinfo 6 months ago - 5 comments

#409 - Fail if color or table do not exist

Issue - State: open - Opened by grst 6 months ago - 1 comment
Labels: enhancement, priority: medium

#408 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment
Labels: release-ignore

#407 - Plot image in grayscale

Issue - State: open - Opened by grst 6 months ago - 2 comments
Labels: enhancement, images :framed_picture:

#406 - Images with alpha channel being plotted incorrectly

Issue - State: open - Opened by ivirshup 6 months ago - 1 comment
Labels: bug, priority: medium, images :framed_picture:

#404 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#403 - render_labels color plot no longer working

Issue - State: open - Opened by mezwick 7 months ago - 6 comments

#402 - Can now specify which 'layer' of the AnnData table to use

Pull Request - State: closed - Opened by Sonja-Stockhaus 7 months ago - 6 comments
Labels: release-added

#401 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#400 - Improved the release process

Pull Request - State: closed - Opened by LucaMarconato 7 months ago - 1 comment

#399 - Which is the truth: datashader VS matplotlib

Issue - State: open - Opened by sunshx-bioinfo 7 months ago - 1 comment

#398 - Issue in plotting cell labels by celltype colour for Xenium

Issue - State: open - Opened by OnkarMulay 7 months ago - 1 comment

#397 - Adde guide for visual testing

Pull Request - State: closed - Opened by LucaMarconato 7 months ago - 5 comments
Labels: release-added

#396 - allow plotting with mismatch between element and table

Pull Request - State: closed - Opened by melonora 7 months ago - 2 comments

#395 - added tests for plotting columns from points

Pull Request - State: closed - Opened by LucaMarconato 7 months ago - 3 comments
Labels: release-added

#394 - Missing tests for plotting columns into points

Issue - State: open - Opened by LucaMarconato 7 months ago

#393 - Tightened type-checking of color input

Pull Request - State: closed - Opened by LucaMarconato 7 months ago - 8 comments

#391 - pl.render_shapes do not support normal hex color

Issue - State: open - Opened by wangjiawen2013 8 months ago - 5 comments

#390 - render_labels plots can not show any legend

Issue - State: open - Opened by liuyang2006 8 months ago - 3 comments

#389 - Render_points breaks with scanpy=1.10.4

Issue - State: closed - Opened by ckmah 9 months ago - 3 comments

#388 - Vega-like viewconfigurations

Issue - State: open - Opened by melonora 9 months ago - 1 comment

#387 - migrate pre-commit config

Pull Request - State: closed - Opened by melonora 9 months ago

#385 - 3D visualize

Issue - State: open - Opened by Yifan-debug 12 months ago - 3 comments

#384 - Do transformations affect Points?

Issue - State: closed - Opened by BaldanMatt 9 months ago - 1 comment

#383 - Migrate GitHub actions to Python 3.10 and 3.12

Issue - State: closed - Opened by timtreis 9 months ago - 1 comment
Labels: housekeeping :broom:

#382 - Missing visualizations tutorials in documentation

Issue - State: closed - Opened by ConstensouxAlexis 9 months ago - 1 comment
Labels: documentation, priority: medium

#381 - Transformations with flipped y-axis

Issue - State: open - Opened by Sonja-Stockhaus 9 months ago - 3 comments
Labels: shapes :bubbles:, :speaking_head: discussion

#380 - support for datatree from xarray

Pull Request - State: closed - Opened by melonora 9 months ago - 1 comment

#379 - Datashader doesn't speed up rendering of points

Issue - State: open - Opened by timtreis 9 months ago - 1 comment
Labels: bug, priority: low, points :abacus:

#378 - Transformations are applied before rendering with datashader

Pull Request - State: closed - Opened by Sonja-Stockhaus 9 months ago - 2 comments
Labels: release-fixed

#377 - MAYBE: Can we select channels for multi-scale images?

Issue - State: open - Opened by timtreis 9 months ago - 5 comments
Labels: bug, priority: low, images :framed_picture:

#375 - Error when selecting more than two values in groups for render_shapes()

Issue - State: open - Opened by Zejian-Wang 9 months ago
Labels: bug, priority: medium, shapes :bubbles: