Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / scverse/spatialdata-plot issues and pull requests
#355 - Categorical color obs column crashes the plotting
Issue -
State: open - Opened by sinanugur 17 days ago
Labels: bug, priority: medium, shapes :bubbles:
#354 - Using `cmap`s fails when rendering multiscale images
Issue -
State: open - Opened by gdurif 19 days ago
- 4 comments
Labels: bug, priority: medium, images :framed_picture:
#353 - pl.render_labels cannot render when color is mapped to a categorical variable. Returns "ValueError: buffer source array is read-only"
Issue -
State: closed - Opened by MiTPenguin 20 days ago
- 6 comments
#352 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 20 days ago
- 1 comment
#351 - Interpolation problem for sparse image data?
Issue -
State: open - Opened by LucaMarconato 21 days ago
#350 - Enhancement: Rasterization changes the value-range of the image.
Issue -
State: open - Opened by timtreis 25 days ago
Labels: enhancement, priority: low
#349 - Colorbar is now the same height as the `ax` object
Pull Request -
State: open - Opened by timtreis 25 days ago
- 1 comment
#348 - Enhancement: Make colorbar the same height as the `ax`
Issue -
State: open - Opened by timtreis 25 days ago
Labels: enhancement, priority: low
#347 - Updated CHANGELOG for release
Pull Request -
State: closed - Opened by timtreis 25 days ago
- 1 comment
#346 - Refactor of `colorbar` and `norm` logic
Pull Request -
State: closed - Opened by timtreis 25 days ago
- 5 comments
#345 - When subsetting by `groups` in `render_labels`, the non-selected are set to white and not `na_color`
Issue -
State: closed - Opened by timtreis 26 days ago
Labels: bug, priority: medium, labels :label:
#344 - Coloring labels by a continuous variable fixed
Pull Request -
State: closed - Opened by timtreis 26 days ago
- 2 comments
#343 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 27 days ago
- 1 comment
#342 - Coloring labels by a continuous variable appears to be broken (labels associated with wrong colors)
Issue -
State: closed - Opened by clwgg 28 days ago
- 1 comment
Labels: bug, priority: high, labels :label:
#341 - hotfix
Pull Request -
State: closed - Opened by timtreis about 1 month ago
- 1 comment
#340 - Error when `xyz_colors` in `adata.uns` and `na_color` have different formats
Issue -
State: closed - Opened by timtreis about 1 month ago
Labels: bug, priority: high, labels :label:, tables :spiral_calendar:
#339 - No longer failing when `xyz` is in adata.uns but not `xyz_colors`
Pull Request -
State: closed - Opened by timtreis about 1 month ago
- 1 comment
#338 - Updated changelog for release
Pull Request -
State: closed - Opened by timtreis about 1 month ago
- 1 comment
#337 - Points not transformed when `method="datashader"`
Issue -
State: open - Opened by clwgg about 1 month ago
- 2 comments
Labels: bug, priority: medium, points :abacus:
#336 - Refactor of labels logic
Pull Request -
State: closed - Opened by timtreis about 1 month ago
- 1 comment
#335 - `contour_px` not respected when `outline_alpha` == `fill_alpha`
Issue -
State: closed - Opened by timtreis about 1 month ago
- 1 comment
Labels: bug, invalid, priority: low, labels :label:
#334 - Donut-MultiPolygons are now correctly rendered again
Pull Request -
State: closed - Opened by timtreis about 1 month ago
- 1 comment
#333 - MultiPolygons with holes are broken
Issue -
State: closed - Opened by timtreis about 1 month ago
Labels: bug, priority: high, shapes :bubbles:
#332 - Coloring by column fails when key (f.e. `xyz`) is in .uns but not default scanpy color info (`xyz_colors`)
Issue -
State: closed - Opened by timtreis about 1 month ago
Labels: bug, priority: medium, labels :label:, tables :spiral_calendar:
#331 - String column names in [0, 1] are now no longer interpreted as colors
Pull Request -
State: closed - Opened by timtreis about 1 month ago
- 1 comment
#330 - Issue of annotations of table
Issue -
State: closed - Opened by Nazim0001 6 months ago
- 17 comments
#329 - Removed `.pp` accessor
Pull Request -
State: closed - Opened by timtreis about 1 month ago
- 2 comments
#328 - Unable to plot categorical columns
Issue -
State: closed - Opened by gboscagli about 1 month ago
- 15 comments
#327 - If an obs column name is 0 or 1, they are not displayed by pl.render_shapes method
Issue -
State: closed - Opened by sinanugur about 1 month ago
- 9 comments
Labels: bug, priority: low, shapes :bubbles:
#326 - scaled data, normalized data and raw counts
Issue -
State: open - Opened by wangjiawen2013 about 1 month ago
- 2 comments
Labels: enhancement, priority: high, tables :spiral_calendar:
#325 - Bug in the MERFISH Technology tutorial
Issue -
State: open - Opened by Marius1311 about 1 month ago
- 1 comment
#324 - Unable to set vmin vmax when plotting vector data
Issue -
State: open - Opened by wangjiawen2013 about 1 month ago
- 17 comments
Labels: bug, shapes :bubbles:
#323 - Categorical data is now correctly colored in the legend when plotting v2
Pull Request -
State: closed - Opened by timtreis about 2 months ago
- 1 comment
#322 - Added better error message for edge-case in which user modifies adata in place outside of sdata
Pull Request -
State: closed - Opened by timtreis about 2 months ago
- 1 comment
#321 - Plotting multiple genes
Issue -
State: open - Opened by wangjiawen2013 about 2 months ago
- 2 comments
Labels: enhancement, needs info, priority: low, :speaking_head: discussion
#320 - sdata.pl.render_points() works weird
Issue -
State: closed - Opened by wangjiawen2013 about 2 months ago
- 2 comments
#319 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 2 months ago
#318 - legend height
Issue -
State: open - Opened by wangjiawen2013 about 2 months ago
Labels: enhancement, priority: low
#317 - figures sharpness
Issue -
State: open - Opened by wangjiawen2013 about 2 months ago
- 10 comments
Labels: :speaking_head: discussion
#316 - Add more informative error message when pl.render_shapes color table columnhas a missmatch of length
Issue -
State: closed - Opened by pakiessling about 2 months ago
- 6 comments
#315 - Point sizes disagree between matplotlib and datashader
Issue -
State: open - Opened by Sonja-Stockhaus 2 months ago
- 4 comments
Labels: bug
#314 - Datashader aggregation function can't be specified by user
Issue -
State: open - Opened by Sonja-Stockhaus 2 months ago
Labels: enhancement
#313 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 2 months ago
- 1 comment
#312 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 2 months ago
- 1 comment
#311 - Wrong colors when using `method='datashader'`
Issue -
State: open - Opened by LucaMarconato 2 months ago
- 4 comments
Labels: bug, priority: medium, shapes :bubbles:
#310 - Different plot if specifying `dpi=` in `plt.figure()` vs in `pl.show()`
Issue -
State: open - Opened by LucaMarconato 2 months ago
- 2 comments
Labels: priority: low
#309 - datashader speedup and bugfixes
Pull Request -
State: open - Opened by Sonja-Stockhaus 2 months ago
- 8 comments
#308 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 3 months ago
- 1 comment
#307 - Fix setting vmin vmax
Pull Request -
State: closed - Opened by melonora 3 months ago
- 5 comments
#306 - Took RNG out of categorical label test
Pull Request -
State: closed - Opened by timtreis 3 months ago
- 1 comment
Labels: bug, priority: low, labels :label:
#305 - Added error handling for non-existent elements
Pull Request -
State: closed - Opened by timtreis 3 months ago
- 1 comment
Labels: bug, housekeeping :broom:, priority: low
#304 - Colorbar not shown for image
Issue -
State: closed - Opened by LucaMarconato 3 months ago
- 3 comments
Labels: needs info, priority: medium, images :framed_picture:
#303 - Unable to set vmin and vmax when plotting raster data
Issue -
State: closed - Opened by LucaMarconato 3 months ago
- 3 comments
Labels: bug, priority: medium, images :framed_picture:
#302 - Added utils function for 0-transparent cmaps
Pull Request -
State: closed - Opened by timtreis 3 months ago
- 5 comments
Labels: enhancement, priority: low, utils :wrench:
#301 - fix scale=full previously ignored for data array
Pull Request -
State: closed - Opened by LucaMarconato 3 months ago
#300 - `scale='full'` ignored for `xarray.DataArray`
Issue -
State: closed - Opened by LucaMarconato 3 months ago
#299 - Bug when trying to plot Visium HD bins as points
Issue -
State: open - Opened by LucaMarconato 3 months ago
- 1 comment
#298 - fix performance bug shapes
Pull Request -
State: closed - Opened by LucaMarconato 3 months ago
- 1 comment
#297 - Drastic decrease in performance for matplotlib plotting
Issue -
State: closed - Opened by LucaMarconato 3 months ago
- 3 comments
#296 - Worse performance using datashader?
Issue -
State: open - Opened by LucaMarconato 3 months ago
- 6 comments
Labels: bug, priority: medium, images :framed_picture:, labels :label:, points :abacus:
#295 - Added benchmarks for plots
Pull Request -
State: closed - Opened by LucaMarconato 3 months ago
- 5 comments
Labels: enhancement, housekeeping :broom:
#294 - `KeyError` not raised when element is not present, for labels, points and shapes
Issue -
State: closed - Opened by LucaMarconato 3 months ago
Labels: bug, priority: low
#293 - fix buffer points
Pull Request -
State: closed - Opened by LucaMarconato 3 months ago
- 1 comment
#292 - Legend wrong for categorical: test failing on "data CI" but not on GitHub.
Issue -
State: closed - Opened by LucaMarconato 3 months ago
- 2 comments
#291 - Error in Squidpy notebook due to rasterization not handling transformations
Issue -
State: open - Opened by LucaMarconato 3 months ago
- 4 comments
#290 - Unknown normalization when rendering crops from spatial samples.
Issue -
State: closed - Opened by rushin682 5 months ago
- 7 comments
Labels: bug
#289 - Import error in spatialdata_plot
Issue -
State: closed - Opened by jnmark 3 months ago
- 4 comments
Labels: needs info
#288 - Points are cut of when rendered with datashader and sth with larger extent is rendered afterwards
Issue -
State: closed - Opened by Sonja-Stockhaus 3 months ago
- 1 comment
Labels: priority: low
#287 - fix tests from modified `get_element_instances`
Pull Request -
State: open - Opened by giovp 3 months ago
- 13 comments
#286 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 3 months ago
- 1 comment
#285 - isel when channel is int
Pull Request -
State: closed - Opened by melonora 3 months ago
#284 - Extract image RGB information per Visium HD bin
Issue -
State: closed - Opened by sunyumail93 3 months ago
- 4 comments
Labels: enhancement
#283 - Small fix for supporting the latest dask
Pull Request -
State: closed - Opened by LucaMarconato 3 months ago
- 1 comment
#282 - use get_element_annotators
Pull Request -
State: closed - Opened by melonora 3 months ago
#281 - Fix labels boundaries
Pull Request -
State: closed - Opened by melonora 3 months ago
#280 - implement label fix
Pull Request -
State: closed - Opened by melonora 3 months ago
- 1 comment
#279 - Visium plotting example seems broken on rendered docs
Issue -
State: closed - Opened by ivirshup 4 months ago
- 4 comments
#278 - pl.render_shapes fail when missing values among category
Issue -
State: closed - Opened by sinanugur 3 months ago
- 3 comments
Labels: bug
#277 - Adjusts spatialdata-plot to use DataArray and DataTree
Pull Request -
State: closed - Opened by melonora 3 months ago
- 1 comment
#276 - TypeError while coloring a variable with missing values.
Issue -
State: closed - Opened by sinanugur 4 months ago
- 1 comment
#275 - Fix transformed labels with outline
Pull Request -
State: open - Opened by aeisenbarth 4 months ago
- 4 comments
Labels: bug, priority: medium, labels :label:
#274 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 4 months ago
- 1 comment
#273 - Label outlines cause wrong transformation
Issue -
State: closed - Opened by aeisenbarth 4 months ago
- 2 comments
#272 - Adjust labels params
Pull Request -
State: closed - Opened by melonora 4 months ago
- 1 comment
#271 - Adjust points params
Pull Request -
State: closed - Opened by melonora 4 months ago
- 1 comment
#270 - Adjust shapes params
Pull Request -
State: closed - Opened by melonora 4 months ago
- 2 comments
#269 - Custom title when multiple coordinate system present and no coordinate system specified
Issue -
State: open - Opened by LucaMarconato 4 months ago
- 1 comment
Labels: enhancement, priority: medium
#268 - `table_name` not automatically inferred
Issue -
State: closed - Opened by LucaMarconato 4 months ago
- 3 comments
#267 - Image render param refactor
Pull Request -
State: closed - Opened by melonora 4 months ago
- 2 comments
#266 - Cannot plot table on shapes when lengths differ
Issue -
State: open - Opened by LucaMarconato 4 months ago
- 1 comment
#265 - Cannot plot table annotations for points
Issue -
State: open - Opened by LucaMarconato 4 months ago
- 1 comment
#264 - fix codecov and precommit
Pull Request -
State: closed - Opened by giovp 4 months ago
- 1 comment
#263 - Update template to v0.4.0
Pull Request -
State: closed - Opened by scverse-bot 4 months ago
Labels: housekeeping :broom:
#262 - Categorical data is now correctly colored in the legend when plotting
Pull Request -
State: closed - Opened by timtreis 5 months ago
- 2 comments
#261 - Updating link to documentation to correct one
Pull Request -
State: closed - Opened by timtreis 5 months ago
- 1 comment
#260 - Color order seems non-deterministic
Issue -
State: closed - Opened by timtreis 5 months ago
- 2 comments
#259 - spring cleaning: incorrect images in visual tests
Issue -
State: open - Opened by timtreis 5 months ago
Labels: bug, housekeeping :broom:, priority: high
#258 - Fix tests in main
Pull Request -
State: closed - Opened by timtreis 5 months ago
- 2 comments
#257 - Fix color assignment for NaN values
Pull Request -
State: closed - Opened by marcovarrone 5 months ago
#256 - render_shapes fails on categorical with NaNs
Issue -
State: closed - Opened by marcovarrone 5 months ago