Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/spatialdata-io issues and pull requests

#51 - fix visium spaceranger

Pull Request - State: closed - Opened by giovp over 1 year ago - 3 comments

#50 - bugs in xenium io code and reading of additional images

Issue - State: closed - Opened by jwrth over 1 year ago - 8 comments

#49 - seqFISH reader

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#48 - Add function to retrieve table from spatialdata object

Pull Request - State: closed - Opened by LLehner over 1 year ago - 1 comment

#47 - anndata2spatialdata conversion

Issue - State: closed - Opened by giovp over 1 year ago - 1 comment

#46 - Update curio reader

Pull Request - State: closed - Opened by LLehner over 1 year ago - 2 comments

#45 - Update docs to point to spatialdata.scverse.org

Pull Request - State: closed - Opened by prete over 1 year ago - 2 comments

#44 - make the Visium reader work with actual SpaceRanger output

Pull Request - State: closed - Opened by ilia-kats over 1 year ago - 2 comments

#42 - Visium data from `Space Ranger < 2.0.0`

Issue - State: closed - Opened by EliHei2 over 1 year ago

#41 - Reader for Curio files

Pull Request - State: closed - Opened by LLehner over 1 year ago - 2 comments

#40 - Fix/categories

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#39 - update readme and docs

Pull Request - State: closed - Opened by kevinyamauchi over 1 year ago

#38 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#37 - revert version regex

Pull Request - State: closed - Opened by kevinyamauchi over 1 year ago

#36 - install spatialdata from pypi

Pull Request - State: closed - Opened by kevinyamauchi over 1 year ago

#35 - add deploy job to CI

Pull Request - State: closed - Opened by kevinyamauchi almost 2 years ago - 4 comments

#34 - Reader for CODEX files

Pull Request - State: closed - Opened by LLehner almost 2 years ago - 4 comments

#33 - Merfish

Pull Request - State: closed - Opened by quentinblampey almost 2 years ago - 14 comments

#32 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago - 1 comment

#31 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#30 - update docs

Pull Request - State: closed - Opened by giovp almost 2 years ago - 1 comment

#29 - Using MultiValueEnum for MCMICRO

Issue - State: open - Opened by melonora almost 2 years ago - 1 comment

#28 - Mcmicro update

Pull Request - State: closed - Opened by melonora almost 2 years ago - 10 comments

#27 - Question about naming tool/subtool for nf-core module

Issue - State: open - Opened by FloWuenne almost 2 years ago - 7 comments

#26 - adapted to the new modules hierarchy

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago

#25 - Wrong type conversion for columns of `DaskDataFrame` in Xenium

Issue - State: closed - Opened by LucaMarconato almost 2 years ago - 1 comment

#24 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#23 - fix image tif name visium

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago - 1 comment

#22 - Fix/xenium

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago - 2 comments

#21 - fixed wrong alignment visium_io

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago - 9 comments

#20 - update precommit

Pull Request - State: closed - Opened by giovp almost 2 years ago

#19 - various fixes and additions for IO

Pull Request - State: closed - Opened by giovp almost 2 years ago - 5 comments

#18 - Transforms refactoring

Pull Request - State: closed - Opened by LucaMarconato about 2 years ago - 1 comment

#17 - fixes and enhancements for IO

Pull Request - State: closed - Opened by giovp about 2 years ago - 2 comments

#16 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago - 1 comment

#15 - best practice to store visium data in multiscale

Issue - State: closed - Opened by giovp about 2 years ago - 3 comments
Labels: visium

#14 - add mcmicro

Pull Request - State: closed - Opened by giovp about 2 years ago - 1 comment

#13 - add steinbock

Pull Request - State: closed - Opened by giovp about 2 years ago - 7 comments

#12 - reader vs converted and performance

Issue - State: closed - Opened by LucaMarconato about 2 years ago - 1 comment

#10 - start with visium

Pull Request - State: closed - Opened by giovp about 2 years ago

#9 - add xenium

Pull Request - State: closed - Opened by giovp about 2 years ago - 1 comment

#8 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago - 1 comment

#7 - cosmx and xenium and visium readers

Pull Request - State: closed - Opened by giovp about 2 years ago - 6 comments

#6 - remove scanpy from requirements

Issue - State: closed - Opened by giovp about 2 years ago

#5 - fixes in IO for xenium, visium and metaspace

Issue - State: closed - Opened by giovp about 2 years ago - 1 comment

#4 - docs

Pull Request - State: closed - Opened by giovp about 2 years ago - 3 comments

#3 - Installation error

Issue - State: closed - Opened by rukhovich about 2 years ago - 1 comment

#2 - xenium dataset

Issue - State: closed - Opened by LucaMarconato about 2 years ago - 2 comments

#1 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago