Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/napari-spatialdata issues and pull requests

#133 - added m1/m2 installation instructions

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#132 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#131 - Error in tutorial notebook `alignment_using_landmarks.ipynb`

Issue - State: closed - Opened by m-albert over 1 year ago - 3 comments

#130 - Problem with switching visibility of coordinate systems

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 4 comments

#129 - Fixes performance with multiscale, fixes docs

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 2 comments

#127 - Support changing coordinate system with arrow keys

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 2 comments

#126 - Slow load time layers

Issue - State: closed - Opened by melonora over 1 year ago - 1 comment

#125 - Issue: slow update time element widget.

Issue - State: closed - Opened by melonora over 1 year ago - 2 comments

#124 - Bug: plotting expects table

Issue - State: closed - Opened by melonora over 1 year ago

#123 - Make a function to open napari with every layer shown

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#122 - Test documentation notebooks

Issue - State: open - Opened by LucaMarconato over 1 year ago

#121 - Test reproducibility notebooks

Issue - State: closed - Opened by kevinyamauchi over 1 year ago - 8 comments

#120 - Create SpatialDataViewer

Pull Request - State: closed - Opened by melonora over 1 year ago - 21 comments

#119 - Update incomplete text in notebooks

Pull Request - State: closed - Opened by rahulbshrestha over 1 year ago - 3 comments

#118 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#116 - Add new layers with metadata inheritance

Pull Request - State: closed - Opened by melonora over 1 year ago

#115 - RGB images support

Pull Request - State: closed - Opened by rahulbshrestha over 1 year ago - 9 comments

#114 - Save to sdata

Pull Request - State: closed - Opened by melonora over 1 year ago - 2 comments

#113 - Can I get the mask with image, table and shape I draw manually using napari?

Issue - State: closed - Opened by yedeer12 over 1 year ago - 3 comments
Labels: question

#112 - Support visualizing multiple `SpatialData` objects

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 8 comments

#111 - Revert pyqt5

Pull Request - State: closed - Opened by melonora over 1 year ago - 4 comments

#110 - pyqt6 vs pyqt5

Issue - State: closed - Opened by kevinyamauchi over 1 year ago - 12 comments

#109 - Give out of date with main branch warning

Issue - State: closed - Opened by melonora over 1 year ago - 4 comments

#107 - Fix docs pre-commit bug

Pull Request - State: closed - Opened by rahulbshrestha over 1 year ago - 4 comments

#106 - Update _interactive.py

Pull Request - State: closed - Opened by berombau over 1 year ago - 2 comments

#105 - Extend CLI

Issue - State: open - Opened by berombau over 1 year ago

#104 - Update cli.md

Pull Request - State: closed - Opened by berombau over 1 year ago - 1 comment

#103 - Split click callbacks in click and on change

Issue - State: closed - Opened by melonora over 1 year ago - 1 comment

#102 - Fixes/cli and points

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 6 comments

#101 - How to use `napari viewer`?

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 2 comments

#100 - Issues displaying multiscale data

Issue - State: closed - Opened by melonora over 1 year ago - 3 comments

#99 - Layer cs visibility

Pull Request - State: closed - Opened by melonora over 1 year ago - 12 comments

#98 - fix issue with name reinitialization

Pull Request - State: closed - Opened by tothmarcella over 1 year ago - 1 comment

#97 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#96 - Layer visibility

Pull Request - State: closed - Opened by melonora over 1 year ago - 1 comment

#95 - Mypy causing issues

Issue - State: closed - Opened by melonora over 1 year ago - 1 comment

#94 - Add napari-spatialdata settings

Issue - State: closed - Opened by melonora over 1 year ago - 1 comment

#93 - Refactor widgets and layer metadata

Pull Request - State: closed - Opened by melonora over 1 year ago - 4 comments

#92 - fix docs

Pull Request - State: closed - Opened by giovp over 1 year ago

#91 - add multipolygons plotting to add shapes

Pull Request - State: closed - Opened by lopollar over 1 year ago - 1 comment

#90 - Change layer in place from view

Pull Request - State: closed - Opened by tothmarcella over 1 year ago - 1 comment

#88 - init docs

Pull Request - State: closed - Opened by giovp over 1 year ago - 1 comment

#87 - Add element to layer metadata

Issue - State: closed - Opened by melonora over 1 year ago - 1 comment

#86 - Add CLI docs

Pull Request - State: closed - Opened by berombau over 1 year ago

#85 - Add CLI interface from spatialdata branch

Pull Request - State: closed - Opened by berombau over 1 year ago - 2 comments

#84 - optional AnnData in metadata

Pull Request - State: closed - Opened by tothmarcella over 1 year ago - 1 comment

#82 - Reader plugin

Pull Request - State: closed - Opened by berombau over 1 year ago

#81 - update pre-commit, install and fixes

Pull Request - State: closed - Opened by giovp over 1 year ago - 1 comment

#80 - information lacking in mibitof_analysis.ipynb

Issue - State: closed - Opened by lopollar over 1 year ago

#79 - Invalid update corner pixels when opening shapes layer

Issue - State: closed - Opened by melonora over 1 year ago - 4 comments

#77 - Refactor anndata to be optional for layers

Issue - State: closed - Opened by giovp over 1 year ago

#76 - Enable lasso selection of disjoint sets in scatterplot

Issue - State: open - Opened by giovp over 1 year ago - 1 comment

#75 - Update README

Pull Request - State: closed - Opened by kevinyamauchi over 1 year ago

#74 - Create interactive widget based on anndata

Issue - State: closed - Opened by giovp over 1 year ago - 1 comment

#73 - Color circles and polygons with annotations

Pull Request - State: closed - Opened by rahulbshrestha over 1 year ago - 7 comments

#72 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#71 - Can't color circles by genes in visium dataset

Issue - State: closed - Opened by kevinyamauchi over 1 year ago - 3 comments

#70 - Add support for circle and polygons (shapes)

Pull Request - State: closed - Opened by rahulbshrestha over 1 year ago

#69 - Scatterwidget

Pull Request - State: closed - Opened by tothmarcella over 1 year ago - 2 comments

#68 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#67 - conda release fail

Issue - State: open - Opened by giovp almost 2 years ago - 3 comments

#66 - RBG images are shown as multichannel images

Issue - State: closed - Opened by LucaMarconato almost 2 years ago - 5 comments

#65 - can't open shapes from visium dataset

Issue - State: closed - Opened by kevinyamauchi almost 2 years ago - 3 comments

#64 - feature request: CLI

Issue - State: closed - Opened by kevinyamauchi almost 2 years ago - 2 comments

#63 - fix package versioning

Pull Request - State: closed - Opened by kevinyamauchi almost 2 years ago - 1 comment

#62 - install spatialdata from pypi

Pull Request - State: closed - Opened by kevinyamauchi almost 2 years ago

#61 - adding transformation

Pull Request - State: closed - Opened by tothmarcella almost 2 years ago - 2 comments

#60 - Add new tutorial notebooks

Pull Request - State: closed - Opened by rahulbshrestha almost 2 years ago - 2 comments

#59 - testing the interactive class

Pull Request - State: closed - Opened by tothmarcella almost 2 years ago - 1 comment

#58 - Fixing private module imports

Pull Request - State: closed - Opened by rahulbshrestha almost 2 years ago - 2 comments

#57 - Improve polygons meshing and maybe rendering performance

Issue - State: open - Opened by LucaMarconato almost 2 years ago

#56 - Pass the polygon data to `self._viewer.add_shapes()` in a more efficient way

Issue - State: open - Opened by LucaMarconato almost 2 years ago - 2 comments

#55 - Set a reasonable upper bound of points that we want to render

Issue - State: closed - Opened by LucaMarconato almost 2 years ago - 2 comments

#53 - Drop the legacy use of `AnnData` for storing the annotations in the layers

Issue - State: closed - Opened by LucaMarconato almost 2 years ago - 1 comment
Labels: question

#52 - Update landing page

Pull Request - State: closed - Opened by rahulbshrestha almost 2 years ago

#51 - Update landing page

Pull Request - State: closed - Opened by rahulbshrestha almost 2 years ago - 1 comment

#50 - KeyError: <class: dict> when selecting entries from `View` widget

Issue - State: closed - Opened by timtreis almost 2 years ago - 1 comment

#49 - Sphinx documentation missing requirements

Issue - State: closed - Opened by rahulbshrestha almost 2 years ago - 1 comment
Labels: bug

#48 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago - 1 comment

#47 - update install and precommit

Pull Request - State: closed - Opened by giovp almost 2 years ago - 3 comments

#46 - Select coordinate system and elements in SpatialData widget

Pull Request - State: closed - Opened by rahulbshrestha almost 2 years ago - 8 comments

#45 - Refactoring/modules hierarchy

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago

#44 - Update layers in-place

Pull Request - State: closed - Opened by rahulbshrestha almost 2 years ago - 2 comments

#43 - add optional triangle dependency (speed up shapes init)

Pull Request - State: closed - Opened by kevinyamauchi almost 2 years ago - 9 comments

#42 - Speeding up napari-spatialdata

Issue - State: open - Opened by kevinyamauchi almost 2 years ago - 4 comments

#41 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#40 - update precommit

Pull Request - State: closed - Opened by giovp almost 2 years ago

#39 - interactive ux for spatialdata

Issue - State: closed - Opened by giovp almost 2 years ago

#38 - Interactive class

Pull Request - State: closed - Opened by giovp almost 2 years ago - 4 comments

#36 - vec

Pull Request - State: closed - Opened by tothmarcella about 2 years ago

#35 - circles getting smaller when zooming in

Issue - State: open - Opened by LucaMarconato about 2 years ago - 9 comments

#34 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago - 1 comment

#33 - add clean to makefile

Pull Request - State: closed - Opened by giovp about 2 years ago - 1 comment