Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scverse/napari-spatialdata issues and pull requests

#237 - Shape layer geometry changes when saving object to SpatialData object

Issue - State: closed - Opened by olivermccallion 10 months ago - 3 comments

#236 - Image appears flipped in Napari

Issue - State: closed - Opened by pakiessling 10 months ago - 8 comments

#235 - Issue of annotations of table

Issue - State: open - Opened by Nazim0001 10 months ago - 17 comments

#234 - Improvements around saving annotations to disk

Issue - State: open - Opened by LucaMarconato 10 months ago

#233 - Barebone annotate

Pull Request - State: closed - Opened by melonora 10 months ago - 13 comments

#232 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago

#231 - How Do I Import Metadata Columns of my Shapes File into Spatialdata?

Issue - State: closed - Opened by jeffquinn-msk 10 months ago - 1 comment

#229 - Fix conditional

Pull Request - State: closed - Opened by melonora 10 months ago

#228 - Drop z dimension from saved rois

Pull Request - State: closed - Opened by LucaMarconato 10 months ago

#227 - Colorbar and slider broken

Issue - State: open - Opened by LucaMarconato 10 months ago - 1 comment

#222 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment

#219 - Docs

Pull Request - State: closed - Opened by melonora 11 months ago - 1 comment

#218 - Shift+E creates Polygon Z in some cases

Issue - State: closed - Opened by LucaMarconato 11 months ago - 2 comments

#216 - Color shapes column

Pull Request - State: closed - Opened by melonora 11 months ago - 4 comments

#215 - Additional small fixes

Pull Request - State: closed - Opened by LucaMarconato 11 months ago

#214 - Fix default size for points elements

Issue - State: open - Opened by LucaMarconato 11 months ago

#213 - Warn users that layers with many shapes are slow to render

Issue - State: open - Opened by LucaMarconato 11 months ago
Labels: priority: medium

#212 - fixed bug circles displayed as points, fixed colors

Pull Request - State: closed - Opened by LucaMarconato 11 months ago

#211 - Enabling tests and docs against pre-released spatialdata

Pull Request - State: closed - Opened by LucaMarconato 11 months ago - 1 comment

#210 - Napari annotation

Pull Request - State: closed - Opened by melonora 11 months ago - 4 comments

#209 - Wrong use of `size` parameter for points layer

Issue - State: closed - Opened by LucaMarconato 11 months ago - 2 comments

#208 - Test spatialelement table join

Pull Request - State: closed - Opened by LucaMarconato 11 months ago - 3 comments

#207 - Issue #192

Pull Request - State: closed - Opened by melonora 11 months ago

#206 - remove _pkg_constants

Issue - State: open - Opened by melonora 11 months ago
Labels: Task

#205 - Issue #180

Pull Request - State: closed - Opened by melonora 11 months ago - 1 comment

#204 - add color by in adata view

Pull Request - State: closed - Opened by melonora 11 months ago

#203 - Changing layer name upon showing with QtAdataViewWidget

Issue - State: closed - Opened by melonora 11 months ago

#202 - Multi table

Pull Request - State: closed - Opened by melonora 11 months ago

#201 - Avoid exception when registering shortcut

Pull Request - State: closed - Opened by aeisenbarth 11 months ago - 2 comments

#200 - Multi table

Pull Request - State: closed - Opened by melonora 11 months ago

#199 - Multi table (#198)

Pull Request - State: closed - Opened by melonora 11 months ago - 1 comment

#198 - Multi table

Pull Request - State: closed - Opened by melonora 11 months ago

#197 - Revert "Multi table"

Pull Request - State: closed - Opened by melonora 11 months ago

#196 - Multi table

Pull Request - State: closed - Opened by melonora 11 months ago - 2 comments

#194 - Feature: on-the-fly rasterization of grid like data

Issue - State: open - Opened by LucaMarconato 12 months ago - 1 comment

#193 - fix wrong point size when affine specified

Pull Request - State: closed - Opened by LucaMarconato 12 months ago

#192 - Wrong elements shown when switching coordinate system

Issue - State: closed - Opened by LucaMarconato about 1 year ago

#191 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#190 - Plotting channels into linked labels layers

Issue - State: open - Opened by LucaMarconato about 1 year ago

#189 - API for programmatically loading single elements into Napari

Issue - State: open - Opened by aeisenbarth about 1 year ago - 3 comments
Labels: good first issue

#188 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#187 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#186 - remove npe related parts

Pull Request - State: closed - Opened by melonora about 1 year ago - 1 comment

#185 - fixed requirements to match what's used

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago - 6 comments

#184 - updated changelog

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago

#183 - Update dependencies

Issue - State: closed - Opened by goanpeca about 1 year ago - 5 comments

#182 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#181 - The plot should be invariant against reordering of the table rows

Issue - State: closed - Opened by LucaMarconato about 1 year ago - 1 comment
Labels: priority: medium

#180 - Clean up legacy code in `_models.py` and related parts

Issue - State: open - Opened by LucaMarconato about 1 year ago - 2 comments
Labels: priority: high

#180 - Clean up legacy code in `_models.py` and related parts

Issue - State: closed - Opened by LucaMarconato about 1 year ago - 4 comments
Labels: priority: medium

#179 - Radius of circles is not affected by coordinate transformations

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 5 comments

#178 - Update changelog

Pull Request - State: closed - Opened by melonora over 1 year ago - 1 comment

#177 - Add safeguard when table is None

Pull Request - State: closed - Opened by aeisenbarth over 1 year ago - 2 comments

#176 - update dependencies

Pull Request - State: closed - Opened by melonora over 1 year ago - 3 comments

#175 - Plotting annotations fix

Pull Request - State: closed - Opened by melonora over 1 year ago - 7 comments

#174 - [Maintenance] Update conda-forge install instructions in README.md

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago - 2 comments

#173 - Improve linking new layers to sdata

Pull Request - State: closed - Opened by melonora over 1 year ago - 5 comments

#172 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#171 - add_globals

Pull Request - State: closed - Opened by melonora over 1 year ago

#170 - Add element api

Pull Request - State: closed - Opened by melonora over 1 year ago - 2 comments

#169 - Public API switch coordinate system

Pull Request - State: closed - Opened by melonora over 1 year ago - 3 comments

#168 - Saving / exporting new elements back to SpatialData

Pull Request - State: closed - Opened by melonora over 1 year ago - 11 comments

#167 - lasso of scatterplot plugin doesn't save back the annotation to anndata

Issue - State: closed - Opened by giovp over 1 year ago - 1 comment

#166 - slider is broken

Issue - State: open - Opened by giovp over 1 year ago

#165 - Issues reproducing annotation notebooks

Issue - State: open - Opened by clwgg over 1 year ago - 2 comments

#163 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#162 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#161 - updated changelog

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago

#160 - Save back to zarr

Issue - State: closed - Opened by grst over 1 year ago - 3 comments
Labels: priority: high

#159 - Cannot plot categorical annotations on circles

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#158 - Add public API to change coordinate system and related tests

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#157 - Can't display labels when no table is present

Issue - State: closed - Opened by timtreis over 1 year ago - 2 comments

#156 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#155 - Refactor duplicate logic

Pull Request - State: closed - Opened by melonora over 1 year ago - 3 comments

#154 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#153 - Change RGB detection to be based on channel names

Pull Request - State: closed - Opened by aeisenbarth over 1 year ago - 3 comments

#152 - Switch to currentItemChanged

Pull Request - State: closed - Opened by melonora over 1 year ago - 3 comments

#151 - Add notebook testing capabilites in Interactive

Pull Request - State: closed - Opened by rahulbshrestha over 1 year ago - 4 comments

#150 - Non-RGB multichannels can be 3

Issue - State: closed - Opened by aeisenbarth over 1 year ago - 18 comments

#149 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#148 - Fix _current deprecation

Pull Request - State: closed - Opened by melonora over 1 year ago - 4 comments

#147 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#146 - Transform layers

Pull Request - State: closed - Opened by melonora over 1 year ago - 1 comment

#145 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#144 - Test loading elements without viewer

Pull Request - State: closed - Opened by rahulbshrestha over 1 year ago - 3 comments

#143 - Split Stack resets coordinates?

Issue - State: open - Opened by harrig12 over 1 year ago - 7 comments

#142 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#141 - No integrated widgets testing

Issue - State: open - Opened by melonora over 1 year ago

#140 - Improved ergonomics of `Interactive`

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#139 - change labels_key to region_key

Pull Request - State: closed - Opened by melonora over 1 year ago - 2 comments

#138 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#137 - Selection._current deprecation napari 0.5.0

Issue - State: closed - Opened by melonora over 1 year ago - 1 comment

#136 - Support multiple SpatialData objects

Pull Request - State: closed - Opened by melonora over 1 year ago - 9 comments

#135 - Old branch "polygon_support"

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 2 comments

#134 - tiny fix cli

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 3 comments