sckott/pytaxize issues and pull requests

#69 - Add delay to respect ncbi entrez api rate limit

Pull Request - State: closed - Opened by dmboyd about 4 years ago - 1 comment

#68 - HTTP Errors. Respect 'X-RateLimit-Remaining' http response header from ncbi entrez

Issue - State: closed - Opened by dmboyd about 4 years ago - 4 comments

#67 - Fix gbif url template for Ids class

Issue - State: open - Opened by sckott over 4 years ago

#66 - added Id class function for EoL

Pull Request - State: closed - Opened by Daniel-Davies over 4 years ago - 4 comments

#65 - starting Classification

Pull Request - State: closed - Opened by Daniel-Davies over 4 years ago - 1 comment

#64 - Classification

Issue - State: open - Opened by Daniel-Davies over 4 years ago - 1 comment

#63 - Lowest_common

Issue - State: open - Opened by Daniel-Davies over 4 years ago - 1 comment

#62 - Eol ids

Pull Request - State: closed - Opened by Daniel-Davies over 4 years ago - 1 comment

#61 - ID for Encyclopedia of Life

Issue - State: open - Opened by Daniel-Davies over 4 years ago

#60 - Gbif ids

Pull Request - State: closed - Opened by Daniel-Davies over 4 years ago - 2 comments

#59 - Ids class design

Issue - State: open - Opened by sckott over 4 years ago

#58 - Allow names or only taxonomic ids as input to higher level methods?

Issue - State: open - Opened by sckott over 4 years ago - 2 comments

#57 - Remove gbif redundant code

Pull Request - State: closed - Opened by Daniel-Davies over 4 years ago - 2 comments

#56 - removed GBIF directory containing redundant code

Pull Request - State: closed - Opened by Daniel-Davies over 4 years ago

#55 - Redundant GBIF code

Issue - State: closed - Opened by Daniel-Davies over 4 years ago

#54 - GBIF ID method

Issue - State: closed - Opened by Daniel-Davies over 4 years ago

#53 - classification class

Issue - State: open - Opened by sckott over 4 years ago - 1 comment

#52 - children class

Issue - State: open - Opened by sckott over 4 years ago - 1 comment

#51 - Added GBIF suggestion wrapper, similar in style to the previously ent…

Pull Request - State: closed - Opened by Daniel-Davies over 4 years ago - 3 comments

#50 - col module: move to using Col+ API

Issue - State: open - Opened by sckott over 4 years ago

#49 - bring back col.downstream after making pandas optional

Issue - State: open - Opened by sckott over 4 years ago

#48 - Add sci2comm and comm2sci methods

Issue - State: closed - Opened by sckott over 4 years ago

#47 - Redo Catalogue of Life

Issue - State: open - Opened by sckott over 4 years ago

#46 - Make use of dictionary keys() & values() compatible with Python 3

Pull Request - State: closed - Opened by puppriss over 5 years ago - 4 comments

#45 - Remove pandas

Pull Request - State: closed - Opened by sdtaylor almost 6 years ago - 5 comments

#44 - fix for #43

Pull Request - State: closed - Opened by ghost about 8 years ago - 4 comments

#43 - Python3 pandas error

Issue - State: closed - Opened by ghost about 8 years ago - 2 comments
Labels: bug

#42 - repack output into DataFrame in _itisdf

Pull Request - State: closed - Opened by ryneches about 8 years ago - 1 comment

#41 - assort key-value pairs into correct DataFrame cols

Pull Request - State: closed - Opened by ryneches about 8 years ago - 1 comment

#40 - possibly drop tnrs

Issue - State: closed - Opened by sckott over 8 years ago

#39 - Vascan search

Pull Request - State: closed - Opened by ghoshbishakh over 8 years ago - 3 comments

#38 - vascan_search giving 'HTTPResponse' object is not callable

Issue - State: closed - Opened by ghoshbishakh over 8 years ago - 5 comments
Labels: bug

#37 - Improve readme, use rst

Issue - State: closed - Opened by sckott almost 9 years ago

#36 - Improve docs, use readthedocs

Issue - State: closed - Opened by sckott almost 9 years ago

#35 - Maybe drop pandas

Issue - State: closed - Opened by sckott almost 9 years ago - 22 comments

#34 - ubio is down

Issue - State: closed - Opened by sckott over 9 years ago - 1 comment

#33 - No matching results warning should be checked in gnr_resolve instead of _gnr_resolve

Pull Request - State: closed - Opened by lyttonhao over 9 years ago - 1 comment

#32 - Removed duplicate function

Pull Request - State: closed - Opened by akshayah3 over 9 years ago

#31 - Remove duplicate function

Pull Request - State: closed - Opened by akshayah3 over 9 years ago

#30 - Create new file for list of names without binary format and remove temporary name list file

Pull Request - State: closed - Opened by panks over 9 years ago - 1 comment

#29 - Refactored requests code throughout the codebase

Pull Request - State: closed - Opened by akshayah3 over 9 years ago - 8 comments

#28 - Add Taxosaurus name resolution. Closes #8. Fix CI build failure due to xrange.

Pull Request - State: closed - Opened by panks over 9 years ago

#27 - Delete temporary name list file in _gnr_resolve()

Pull Request - State: closed - Opened by lyttonhao over 9 years ago - 8 comments

#26 - Input validation for itis functions

Pull Request - State: closed - Opened by akshayah3 over 9 years ago

#25 - Input validation for gbif_parse()

Pull Request - State: closed - Opened by akshayah3 over 9 years ago

#24 - Added test for the tnrs module

Pull Request - State: closed - Opened by akshayah3 over 9 years ago - 7 comments

#23 - Tests for Ubio module

Pull Request - State: closed - Opened by akshayah3 over 9 years ago

#22 - Added tests for gni module

Pull Request - State: closed - Opened by akshayah3 over 9 years ago - 1 comment

#21 - Input validation to col_children()

Pull Request - State: closed - Opened by akshayah3 over 9 years ago - 1 comment

#20 - Slice input list of size>1000 in gnr_resolve()

Pull Request - State: closed - Opened by panks over 9 years ago - 1 comment

#19 - Support multiple names for gnr_resolve(), Add POST. Fixes #12. Resolution from TNRS Fixes #8.

Pull Request - State: closed - Opened by panks over 9 years ago - 1 comment

#18 - Update names_list() fxn that reads local csv files, Fixes #10

Pull Request - State: closed - Opened by panks over 9 years ago - 1 comment

#17 - Input validation for ubio_search

Pull Request - State: closed - Opened by akshayah3 over 9 years ago - 1 comment

#16 - putting changes for tests back to master

Pull Request - State: closed - Opened by sckott over 9 years ago

#15 - Changed raise_for_status to raise_for_status()

Pull Request - State: closed - Opened by akshayah3 over 9 years ago - 5 comments

#14 - Add CI

Issue - State: closed - Opened by sckott over 9 years ago - 2 comments

#13 - Return [] for each query with no result returned instead of Raise NoResultException

Pull Request - State: closed - Opened by lyttonhao over 9 years ago - 1 comment

#12 - Support multiple names for gnr_resolve()

Issue - State: closed - Opened by lyttonhao over 9 years ago - 17 comments

#11 - fix import problems

Pull Request - State: closed - Opened by yoavram almost 10 years ago

#10 - Fix names_list() fxn that reads local csv files

Issue - State: closed - Opened by sckott almost 10 years ago - 1 comment

#9 - Can't install on Python3

Issue - State: closed - Opened by yoavram almost 10 years ago - 5 comments
Labels: bug, python3

#8 - Name resolution

Issue - State: closed - Opened by sckott almost 11 years ago - 2 comments

#7 - Newtests

Pull Request - State: closed - Opened by sckott almost 11 years ago

#6 - Add check status code to each function

Issue - State: closed - Opened by sckott almost 11 years ago - 5 comments
Labels: feature

#5 - Adding install requirements to setup script, adding an example of error handling, and .gitignoring unnecessary auto-generated files.

Pull Request - State: closed - Opened by bendmorris almost 11 years ago - 2 comments

GitHub / sckott/pytaxize issues and pull requests