Ecosyste.ms: Issues

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GitHub / scipion-em/scipion-em-sphire issues and pull requests

#131 - 3.2.3: Tolerate failure for streaming spa picking

Pull Request - State: closed - Opened by azazellochg 3 months ago - 1 comment

#130 - adapt to new execution mode definition

Pull Request - State: closed - Opened by pconesa 4 months ago

#129 - Add napari viewer for 2D coordinates

Pull Request - State: open - Opened by azazellochg 4 months ago

#128 - use napari viewer for 2D coords as well

Issue - State: open - Opened by azazellochg 4 months ago
Labels: enhancement

#127 - xmipp-related tests failing

Issue - State: closed - Opened by azazellochg 5 months ago - 1 comment

#126 - check the installer

Issue - State: closed - Opened by azazellochg 5 months ago - 1 comment

#125 - Boxsize was not optional, only worked when a 0 value was introduced

Pull Request - State: closed - Opened by Vilax 5 months ago

#124 - Tolerate failure for streaming spa picking

Pull Request - State: closed - Opened by danielmarchan3 7 months ago
Labels: enhancement

#123 - Unmatching model names

Issue - State: closed - Opened by fede-pe 7 months ago - 8 comments

#122 - release changes

Pull Request - State: closed - Opened by azazellochg 8 months ago

#121 - fix emtools dependency

Pull Request - State: closed - Opened by azazellochg 8 months ago

#120 - release 3.2.1

Pull Request - State: closed - Opened by azazellochg 8 months ago

#119 - fix broken training tomo protocol

Pull Request - State: closed - Opened by azazellochg 8 months ago

#118 - add new version

Pull Request - State: closed - Opened by azazellochg 9 months ago - 4 comments

#117 - remove xmipp from global import

Pull Request - State: closed - Opened by azazellochg 9 months ago

#116 - Jmrt devel

Pull Request - State: closed - Opened by delarosatrevin 10 months ago - 5 comments

#114 - adding score to the output of cryolo tomo

Pull Request - State: closed - Opened by Vilax 12 months ago

#113 - bug fix missing input argument

Pull Request - State: closed - Opened by azazellochg about 1 year ago

#112 - converting dig Freq to Angstrom

Pull Request - State: closed - Opened by Vilax about 1 year ago - 2 comments

#111 - 3.1.13

Pull Request - State: closed - Opened by azazellochg about 1 year ago

#109 - add version 1.9.7

Issue - State: closed - Opened by azazellochg about 1 year ago

#108 - hotfix coords file extension

Pull Request - State: closed - Opened by azazellochg about 1 year ago

#107 - release 3.1.11

Pull Request - State: closed - Opened by azazellochg about 1 year ago

#106 - Prevent viewers from locking the screen focus

Pull Request - State: closed - Opened by JorMaister about 1 year ago

#105 - reading .coords files from napari-boxmanager

Pull Request - State: closed - Opened by fonsecareyna82 about 1 year ago - 1 comment

#104 - napari installation moved to the tomo plugin

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#103 - reuse TomogramsTreeProvider and ToolbarListDialog

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#102 - refactor napari viewer to run in the project's Tmp

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#101 - release devel

Pull Request - State: closed - Opened by pconesa over 1 year ago

#100 - update devel with master

Pull Request - State: closed - Opened by pconesa over 1 year ago

#99 - Tolerates the absence of tomo plugin

Pull Request - State: closed - Opened by pconesa over 1 year ago

#98 - Tolerates the absence of tomo plugin

Pull Request - State: closed - Opened by pconesa over 1 year ago

#97 - 3.1.9

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#96 - fix broken links

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#95 - Devel to master

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago

#94 - Fix: coordinates 3d sent to napari are not flipped on Y axis.

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#93 - * Fixing an error taking a pretrained model

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago

#92 - * Fixing the TestSphireConvert test

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago

#91 - Fix test convert

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago

#90 - Code refactor

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago - 1 comment

#89 - Filaments picking

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago - 3 comments

#88 - 3.1.6

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#87 - release streaming hot fix

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#86 - Fix auto picking streaming

Pull Request - State: closed - Opened by danielmarchan3 almost 2 years ago
Labels: bug

#85 - check for empty cbox files

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#84 - 3.1.3

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#83 - Issue with empty cbox files

Issue - State: closed - Opened by JoQCcoz almost 2 years ago - 7 comments
Labels: bug

#82 - add cryolo 1.9.3

Pull Request - State: closed - Opened by azazellochg almost 2 years ago - 1 comment

#81 - add cryolo 1.9.3

Issue - State: closed - Opened by azazellochg almost 2 years ago

#80 - Cryolo training for tomography

Issue - State: closed - Opened by brodriguezdefrancisco almost 2 years ago - 3 comments

#79 - update devel with master

Pull Request - State: closed - Opened by pconesa about 2 years ago

#78 - fix streaming in tomo picking

Pull Request - State: closed - Opened by pconesa about 2 years ago

#77 - forgot requirements.txt

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#76 - release 3.1

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#75 - plugin refactor

Pull Request - State: closed - Opened by azazellochg about 2 years ago - 1 comment

#74 - Error during installation

Issue - State: closed - Opened by MohamadHarastani about 2 years ago

#73 - Updated to cryolo-1.8.4

Pull Request - State: closed - Opened by delarosatrevin about 2 years ago

#72 - * fixing a test

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#71 - Making v1.8.2 version as default

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#70 - * Making v1.8.2 as default installation version

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago - 1 comment

#69 - reset LD_LIBRARY_PATH during run

Issue - State: closed - Opened by azazellochg over 2 years ago - 1 comment

#68 - cryolo picking crashes when no particles were picked from a certain micrograph.

Issue - State: closed - Opened by genisvalentin almost 3 years ago - 2 comments

#67 - Fixing error related to numpy

Pull Request - State: closed - Opened by pconesa almost 3 years ago - 1 comment

#66 - Update __init__.py

Pull Request - State: closed - Opened by fonsecareyna82 almost 3 years ago

#65 - Changes to devel

Pull Request - State: closed - Opened by delarosatrevin about 3 years ago - 1 comment

#64 - Devel

Pull Request - State: closed - Opened by delarosatrevin about 3 years ago - 1 comment

#63 - cryolo running but now working well

Issue - State: closed - Opened by carlospmata about 3 years ago

#62 - Multiply estimated box size by a factor (parameter)

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#61 - Fix command line when using CPU and empty mic lists

Pull Request - State: closed - Opened by delarosatrevin over 3 years ago

#60 - Tomo picking

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#59 - * Modifying the training test

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#58 - * Updated to crYOLO 1.8

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#57 - Update python-package.yml

Pull Request - State: closed - Opened by pconesa over 3 years ago

#56 - Fix bug when there are no coordinates

Pull Request - State: closed - Opened by delarosatrevin over 3 years ago

#55 - Add gpu selection to janni protocol

Pull Request - State: closed - Opened by JorMaister about 4 years ago

#54 - sphire-janni: add gpu param

Issue - State: closed - Opened by JorMaister about 4 years ago

#53 - Fix persistance problem when continuing after having estimated the bo…

Pull Request - State: closed - Opened by JorMaister about 4 years ago

#52 - Endless loop when installing

Issue - State: closed - Opened by pconesa about 4 years ago - 2 comments

#51 - Release devel

Pull Request - State: closed - Opened by pconesa about 4 years ago

#50 - Streaming fixes in picking protocol

Pull Request - State: closed - Opened by JorMaister about 4 years ago - 2 comments

#49 - Release plugin with lastest crYOLO version

Pull Request - State: closed - Opened by JorMaister over 4 years ago

#48 - Jj update to 1 7 5

Pull Request - State: closed - Opened by JorMaister over 4 years ago - 3 comments

#47 - Update README.rst

Pull Request - State: closed - Opened by pconesa over 4 years ago

#46 - Different results 1 GPU vs 4 GPUs

Issue - State: closed - Opened by delarosatrevin over 4 years ago - 9 comments

#45 - picking does not output boxSize until the end

Issue - State: closed - Opened by azazellochg over 4 years ago - 1 comment

#44 - Release 3.0.4

Pull Request - State: closed - Opened by JorMaister over 4 years ago

#43 - Make links of the input files instead of copying them

Pull Request - State: closed - Opened by JorMaister over 4 years ago

#42 - Jj fix janni subset

Pull Request - State: closed - Opened by JorMaister over 4 years ago

#41 - New release after last fixes

Pull Request - State: closed - Opened by JorMaister over 4 years ago

#40 - Jj fix picking no bs streaming

Pull Request - State: closed - Opened by JorMaister over 4 years ago - 2 comments

#39 - Allowing CPU for predict

Pull Request - State: closed - Opened by dmaluenda over 4 years ago - 6 comments

#38 - Publishing and tag

Pull Request - State: closed - Opened by fonsecareyna82 over 4 years ago

#37 - release 3.0.1

Pull Request - State: closed - Opened by azazellochg over 4 years ago

#36 - cryolo binary needs updating

Issue - State: closed - Opened by azazellochg over 4 years ago

#35 - Python3 migration

Pull Request - State: closed - Opened by azazellochg over 4 years ago - 1 comment

#34 - Release version

Pull Request - State: closed - Opened by JorMaister almost 5 years ago

#33 - Add variable to set which CUDA version should be used Python3

Pull Request - State: closed - Opened by JorMaister almost 5 years ago

#32 - Jj add cuda env var scipion2

Pull Request - State: closed - Opened by JorMaister almost 5 years ago