Ecosyste.ms: Issues

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GitHub / scipion-em/scipion-em-relion issues and pull requests

#424 - bump version

Pull Request - State: closed - Opened by azazellochg about 1 month ago

#423 - 5.0.0b10

Pull Request - State: closed - Opened by azazellochg about 1 month ago

#422 - test failing

Issue - State: closed - Opened by azazellochg about 2 months ago - 1 comment

#421 - Added the option to use SCIPION_SCRATCH

Pull Request - State: closed - Opened by oierlauzi about 2 months ago - 1 comment
Labels: enhancement

#418 - Installation of RELION Plugin Stalls

Issue - State: closed - Opened by jpellman 3 months ago - 2 comments

#417 - Halves

Pull Request - State: closed - Opened by JorMaister 3 months ago

#416 - in the resize operation halves were not resized

Pull Request - State: closed - Opened by Vilax 3 months ago - 8 comments

#415 - 5.0.0b9

Pull Request - State: closed - Opened by azazellochg 4 months ago

#414 - validate if mpi>=3 for auto-refine

Issue - State: closed - Opened by azazellochg 4 months ago

#413 - fix deps

Pull Request - State: closed - Opened by azazellochg 5 months ago

#412 - close #411

Pull Request - State: closed - Opened by azazellochg 5 months ago

#411 - update class numbers from the ini model output

Issue - State: closed - Opened by azazellochg 5 months ago
Labels: enhancement

#410 - add protocol for relion_suggest_tvalue

Issue - State: open - Opened by azazellochg 5 months ago

#409 - fix validation

Pull Request - State: closed - Opened by azazellochg 6 months ago

#408 - 5.0.0b5

Pull Request - State: closed - Opened by azazellochg 7 months ago - 3 comments

#407 - gain estimation refactored, test added

Pull Request - State: closed - Opened by azazellochg 7 months ago - 2 comments

#406 - refactor estimate gain protocol

Issue - State: closed - Opened by azazellochg 7 months ago

#405 - 5.0.0b4

Pull Request - State: closed - Opened by azazellochg 7 months ago

#404 - getting last iteration fails

Issue - State: closed - Opened by azazellochg 7 months ago - 1 comment
Labels: bug

#403 - remove incorrect flag

Pull Request - State: closed - Opened by azazellochg 7 months ago

#402 - 5.0.0b1

Pull Request - State: closed - Opened by azazellochg 7 months ago

#401 - fix FSC viewer: Do not show empty figure when closing.

Pull Request - State: closed - Opened by pconesa 9 months ago

#400 - improve ctf refine plots

Issue - State: open - Opened by azazellochg 9 months ago

#399 - plot cls distr over iterations

Issue - State: closed - Opened by azazellochg 9 months ago - 1 comment
Labels: bug

#398 - do not convert eer .gain file

Issue - State: closed - Opened by azazellochg 9 months ago - 1 comment
Labels: bug

#397 - 4.0.19

Pull Request - State: closed - Opened by azazellochg 9 months ago

#396 - check micName when creating set of coords

Issue - State: closed - Opened by azazellochg 9 months ago - 1 comment

#395 - adding more coords to imported set fails

Issue - State: closed - Opened by azazellochg 9 months ago
Labels: bug

#394 - Some new utility protocols

Pull Request - State: closed - Opened by delarosatrevin 9 months ago - 1 comment

#393 - Relion5 support

Pull Request - State: closed - Opened by azazellochg 11 months ago - 3 comments

#392 - add v5.0

Issue - State: closed - Opened by azazellochg 11 months ago

#391 - import from a star file creates strange columns in sqlite

Issue - State: closed - Opened by azazellochg about 1 year ago - 1 comment

#390 - add ewald params to reconstruct

Pull Request - State: closed - Opened by azazellochg about 1 year ago

#389 - ewald sphere

Issue - State: closed - Opened by rmarabini about 1 year ago - 1 comment

#388 - Import particles fails

Issue - State: closed - Opened by rsanchezgarc over 1 year ago - 5 comments
Labels: bug

#387 - add missing CUDA_BIN var

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#385 - remove direct pointer

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 1 comment

#384 - Relion3d classification dies not play well in long scheduling projects

Issue - State: closed - Opened by pconesa over 1 year ago - 2 comments

#383 - initial model protocol not displayed in left panel

Issue - State: closed - Opened by azazellochg over 1 year ago - 1 comment
Labels: help wanted

#382 - 4.0.15

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#381 - * Extending the conversion of incompatibles formats

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#380 - 4.0.14

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#379 - Updated 2d class ranker protocol

Pull Request - State: closed - Opened by delarosatrevin over 1 year ago - 2 comments

#377 - 4.0.13

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#376 - Error with relion class ranker in Scipion 3.

Issue - State: closed - Opened by stefanocapaldi over 1 year ago - 8 comments
Labels: bug

#375 - problem with relion autopick_LoG

Issue - State: closed - Opened by stefanocapaldi over 1 year ago - 3 comments

#374 - 4.0.12

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#373 - optimiser file import error because of duplicated row

Issue - State: closed - Opened by azazellochg almost 2 years ago
Labels: bug

#372 - symmetry expansion broken links for images

Issue - State: open - Opened by pconesa almost 2 years ago - 3 comments

#371 - use cryosparc output as relion input

Issue - State: open - Opened by rmarabini almost 2 years ago - 5 comments

#370 - Installation via Scipion Plugin manager fails

Issue - State: closed - Opened by DStrelak almost 2 years ago - 2 comments
Labels: bug, wontfix

#368 - fix wrong python call

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#367 - check polishing with epu movies

Issue - State: open - Opened by azazellochg about 2 years ago - 4 comments
Labels: bug, Import/Export

#366 - relion.tests.test_convert.TestReconstruct fails

Issue - State: closed - Opened by azazellochg about 2 years ago - 2 comments

#365 - subtract projection error

Issue - State: closed - Opened by azazellochg about 2 years ago - 8 comments
Labels: help wanted

#364 - With lastest change in the installer rmdir should be replaced by rm -rf

Pull Request - State: closed - Opened by pconesa about 2 years ago - 3 comments

#363 - 4.0.10

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#362 - Protocols classify2D and extract particles: fix streaming

Pull Request - State: closed - Opened by danielmarchan3 about 2 years ago

#361 - save gain file in the output opticsgroup string

Issue - State: closed - Opened by azazellochg about 2 years ago - 1 comment

#360 - 4.0.9

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#359 - Bayesian polishing with EER file format.

Issue - State: closed - Opened by DmitrySemchonok about 2 years ago - 11 comments

#358 - Update README.rst

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment

#357 - 4.0.8

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#356 - better integration with sidesplitter plugin

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#355 - fix typo in half2 filename

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#354 - implement continue polishing job

Issue - State: open - Opened by azazellochg over 2 years ago

#353 - MB make a fake mask to bypass relion check

Issue - State: closed - Opened by azazellochg over 2 years ago
Labels: bug

#352 - 4.0.6

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#351 - hotfix for multi-body protocol

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#349 - Hotfix gpu funcs

Pull Request - State: closed - Opened by delarosatrevin over 2 years ago

#348 - useGpu param missing in the plugin 4.0.4

Issue - State: closed - Opened by azazellochg over 2 years ago - 1 comment
Labels: bug

#347 - Fix empty miclist

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 2 comments

#346 - 4.0.4

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#345 - close #1

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#344 - add conda env for class 2d ranker

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 3 comments

#342 - 4.0.3

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#341 - remove :mrc if possible

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 1 comment

#340 - Non-uniform refinement fails at import half maps from relion

Issue - State: closed - Opened by genisvalentin over 2 years ago - 3 comments
Labels: bug

#339 - create conda env for 2d cls ranker

Issue - State: closed - Opened by azazellochg over 2 years ago
Labels: enhancement

#338 - fix validation

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#337 - Allow input pointers in picking parameters for autocompletion of params

Pull Request - State: closed - Opened by danielmarchan3 over 2 years ago - 2 comments

#336 - add import coords protocol

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 7 comments

#335 - 4.0.1

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 1 comment

#334 - Possibility to give half-maps as an input to Relion post-processing

Issue - State: closed - Opened by VaarinHousutMD over 2 years ago - 1 comment
Labels: enhancement

#333 - add labels dict

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 1 comment

#332 - 4.0

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#331 - Problem installing relion-4.0 plugin

Issue - State: closed - Opened by olofsvensson over 2 years ago - 3 comments

#330 - add relion reconstruct viewer

Pull Request - State: closed - Opened by rmarabini over 2 years ago

#329 - Error Relion "returned non-zero exit status 127"

Issue - State: closed - Opened by Adriaj95 almost 3 years ago - 7 comments

#328 - added base protocol to all childs

Pull Request - State: open - Opened by azazellochg almost 3 years ago

#327 - update install routine

Pull Request - State: closed - Opened by azazellochg almost 3 years ago - 1 comment

#326 - Error in Relion particle extraction

Issue - State: closed - Opened by Adriaj95 almost 3 years ago - 1 comment
Labels: wontfix

#325 - 3D Classification error in Relion 4.0 plugin

Issue - State: closed - Opened by cossorzano almost 3 years ago - 10 comments
Labels: bug

#324 - Protocol autopickLog allows pointer for the box size param

Pull Request - State: closed - Opened by danielmarchan3 almost 3 years ago

#323 - gain-related protocols update

Pull Request - State: closed - Opened by azazellochg about 3 years ago

#322 - Fix when there are not micrographs to extract

Pull Request - State: closed - Opened by delarosatrevin about 3 years ago - 2 comments