Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scipion-em/scipion-em-imod issues and pull requests

#213 - Imod - CTF correction does not label the output with "! interp"

Issue - State: closed - Opened by brodriguezdefrancisco over 1 year ago - 1 comment

#212 - clear odd/even for the outputs if not used

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#211 - Binning

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#210 - Use new parameters in Landmark model

Pull Request - State: closed - Opened by fede-pe over 1 year ago

#209 - tomo normalization bug in dimensions

Pull Request - State: closed - Opened by Vilax over 1 year ago

#208 - On the fly binning for display in 3dmod

Pull Request - State: closed - Opened by rdrighetto over 1 year ago - 3 comments

#207 - Adding tilt angle, trimming and documentation enhanced

Pull Request - State: closed - Opened by Vilax over 1 year ago

#206 - 3.1.10

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 2 comments

#205 - fix version

Pull Request - State: closed - Opened by pconesa over 1 year ago

#204 - 3.1.9

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 1 comment

#203 - fixing dose

Pull Request - State: closed - Opened by Vilax over 1 year ago - 1 comment

#202 - fiducial alignment and CTF correction do not store the proper dose per image

Issue - State: closed - Opened by Vilax over 1 year ago - 3 comments
Labels: bug

#201 - fixing excluded views in text file

Pull Request - State: closed - Opened by Vilax over 1 year ago

#199 - exclude views

Issue - State: closed - Opened by Vilax over 1 year ago - 11 comments

#198 - IMOD Coarse Alignement within Scipion

Issue - State: closed - Opened by fjchichon almost 2 years ago - 3 comments
Labels: help wanted

#197 - release devel

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#196 - - Reconstruction:

Pull Request - State: closed - Opened by pconesa almost 2 years ago - 1 comment

#195 - Releasing 3.1.7

Pull Request - State: closed - Opened by pconesa almost 2 years ago - 1 comment

#194 - odd-even implemented

Pull Request - State: closed - Opened by Vilax almost 2 years ago - 1 comment

#193 - Imod CTF seems to loose alignment information

Issue - State: closed - Opened by Vilax almost 2 years ago - 1 comment

#192 - - Fix: Xray erser when there is alignment.

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#191 - icon added

Pull Request - State: closed - Opened by pconesa almost 2 years ago - 3 comments

#190 - imod - import CTF

Issue - State: closed - Opened by Vilax almost 2 years ago - 2 comments

#189 - Fix scheduling

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#188 - etomo aligned TS are interpolated, axis = 0

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#187 - releasing devel

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#186 - The server to downolad the imod_%s_RHEL7-64_CUDA10.1.sh has some changes and does not work properly

Issue - State: closed - Opened by albertmena almost 2 years ago - 5 comments
Labels: bug

#185 - fix xf file reading

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#184 - scipion-em-aretomo -outImod generates one extra blank line on the xf

Issue - State: closed - Opened by plosana about 2 years ago - 2 comments

#183 - updated the version of imod

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago - 2 comments

#182 - release 3.1.4

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#181 - set tilt axis to 0 if TS is aligned

Pull Request - State: closed - Opened by azazellochg about 2 years ago - 3 comments

#180 - release imod (no check of jpeg)

Pull Request - State: closed - Opened by pconesa about 2 years ago

#179 - ERROR! Required library l was not found

Issue - State: closed - Opened by wlugmayr about 2 years ago - 2 comments

#178 - fix rst

Pull Request - State: closed - Opened by pconesa about 2 years ago

#177 - Update python-package.yml

Pull Request - State: closed - Opened by pconesa about 2 years ago

#176 - Update __init__.py

Pull Request - State: closed - Opened by pconesa about 2 years ago

#175 - Update python-package.yml

Pull Request - State: closed - Opened by pconesa about 2 years ago

#174 - releasing devel: first release

Pull Request - State: closed - Opened by pconesa about 2 years ago

#173 - * Updating README.rst

Pull Request - State: closed - Opened by fonsecareyna82 about 2 years ago

#172 - Fiducial model fails in streaming

Issue - State: closed - Opened by pconesa about 2 years ago

#171 - Fiducial model protocol fails sometimes in streaming

Issue - State: closed - Opened by pconesa about 2 years ago - 1 comment

#170 - erase gold in fid.alignment protocol

Issue - State: open - Opened by azazellochg about 2 years ago
Labels: help wanted

#169 - Imod protocols do not work, for now in streaming.

Pull Request - State: closed - Opened by pconesa about 2 years ago

#168 - * Flag ts as interpolated in some cases

Pull Request - State: closed - Opened by fonsecareyna82 about 2 years ago

#167 - etomo output set of LMM not closing

Issue - State: closed - Opened by azazellochg about 2 years ago - 2 comments
Labels: bug, help wanted

#166 - Fix preprocessing

Pull Request - State: closed - Opened by pconesa about 2 years ago

#165 - Report error in decorator

Pull Request - State: closed - Opened by pconesa about 2 years ago

#164 - Annotate ts

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#163 - etomo: tolerate clean-up step

Issue - State: closed - Opened by azazellochg about 2 years ago - 1 comment

#162 - Gs fixes6

Pull Request - State: closed - Opened by azazellochg about 2 years ago - 2 comments

#161 - show angles in the 3dmod viewer

Issue - State: closed - Opened by azazellochg about 2 years ago - 2 comments

#160 - add beadtrack step with current model as seed

Issue - State: closed - Opened by azazellochg about 2 years ago

#159 - fix rotation angle calculation for newstack operation

Pull Request - State: closed - Opened by azazellochg about 2 years ago

#158 - Do not interpolate ts

Pull Request - State: closed - Opened by pconesa about 2 years ago

#157 - more fixes

Pull Request - State: closed - Opened by azazellochg about 2 years ago - 2 comments

#156 - generate fiducial model stucks when executing

Issue - State: closed - Opened by fede-pe about 2 years ago - 7 comments
Labels: help wanted

#155 - Imod tilt-series normalization is introducing some error in the alignment matrix

Issue - State: open - Opened by fede-pe about 2 years ago - 3 comments

#154 - Imod ctfcorrection fails

Issue - State: closed - Opened by pconesa about 2 years ago
Labels: bug

#153 - transition to mrc naming style for etomo protocol

Issue - State: closed - Opened by azazellochg about 2 years ago
Labels: enhancement

#152 - add parallel/gpu options to protocols

Issue - State: closed - Opened by azazellochg about 2 years ago - 1 comment
Labels: enhancement

#151 - Gs fixes3

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#150 - use LandmarkModel.applyTSTransformation in the viewer to interpolate …

Pull Request - State: closed - Opened by pconesa over 2 years ago

#149 - Fix viewer landmarkmodel

Pull Request - State: closed - Opened by pconesa over 2 years ago

#148 - more fixes

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#147 - verify the whole pipeline with excluded views

Issue - State: closed - Opened by azazellochg over 2 years ago

#146 - erase gold in fid alignment protocol is not working

Issue - State: closed - Opened by azazellochg over 2 years ago - 1 comment
Labels: bug

#145 - XTILTFILE and XAXISTILT are not supported

Issue - State: open - Opened by azazellochg over 2 years ago

#144 - Fix apply transform

Pull Request - State: closed - Opened by pconesa over 2 years ago

#143 - fixes for imod protocols

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 2 comments

#141 - Review performance of ImodViewer fro Fiducial models...

Issue - State: closed - Opened by pconesa over 2 years ago - 1 comment
Labels: bug

#140 - apply transform and exclude views fails

Issue - State: closed - Opened by pconesa over 2 years ago - 2 comments
Labels: bug

#139 - etomo:

Issue - State: closed - Opened by pconesa over 2 years ago - 1 comment
Labels: bug

#138 - Exclude views works also with Set with excluded views

Pull Request - State: closed - Opened by pconesa over 2 years ago

#137 - imos reconstruction does not work with excluded views

Issue - State: closed - Opened by pconesa over 2 years ago
Labels: bug

#136 - update devel with master

Pull Request - State: closed - Opened by pconesa over 2 years ago

#135 - testing imod release action

Pull Request - State: closed - Opened by pconesa over 2 years ago

#134 - All Outputs renamed (removing obvious "outputSetOf")

Pull Request - State: closed - Opened by pconesa over 2 years ago

#133 - distutils is deprecated

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#132 - * Registering the excluded views

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#131 - Convert 3d coordinates based in imod dimensions

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#130 - Fixes in tilt series coordinates object

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#129 - Imod -- Fiducial alignment step

Issue - State: closed - Opened by DmitrySemchonok over 2 years ago - 2 comments
Labels: help wanted

#128 - fixes in fiducial alignment

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#127 - fixes in output interpolated dimensions in fiducial alignment

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#126 - Use new titl series coordinates fixes

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#125 - Fixes in calculate average roation angle

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#124 - Use new object for tilt series coordinates

Pull Request - State: closed - Opened by pconesa over 2 years ago

#123 - Add tomId to fiducial coordinates

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#122 - close output step import tmW

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#121 - Fix landmark models and tilt-series matching II

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#120 - Fix landmark models and tilt-series matching

Pull Request - State: closed - Opened by fede-pe over 2 years ago

#119 - Fix unnecesary link II

Pull Request - State: closed - Opened by fede-pe almost 3 years ago

#118 - Fix unnecesary link

Pull Request - State: closed - Opened by fede-pe almost 3 years ago

#117 - calling imod outside of imod

Pull Request - State: closed - Opened by Vilax almost 3 years ago

#116 - Updating the tilt angles from .tlt file

Pull Request - State: closed - Opened by fonsecareyna82 almost 3 years ago

#115 - fixes etomo relauching project

Pull Request - State: closed - Opened by fede-pe almost 3 years ago

#114 - check if Imod out file *.xf is empty and report it

Pull Request - State: closed - Opened by rmarabini about 3 years ago