Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scipion-em/scipion-em-imod issues and pull requests

#285 - check etomo output landmarks creation

Issue - State: open - Opened by azazellochg about 8 hours ago

#284 - why are IMOD_DIR IMOD_PATH cleared?

Issue - State: closed - Opened by truatpasteurdotfr 4 days ago - 1 comment

#282 - Gs refactor

Pull Request - State: open - Opened by azazellochg 8 days ago - 5 comments

#281 - check default values

Issue - State: open - Opened by azazellochg 18 days ago

#280 - 3.5.1

Pull Request - State: closed - Opened by azazellochg 19 days ago

#279 - condition on adjust densities

Pull Request - State: closed - Opened by Vilax 21 days ago

#278 - - CTF correction: get rid of the decorator. Manage the failed TS in…

Pull Request - State: closed - Opened by JorMaister 24 days ago - 7 comments

#277 - housekeeping

Pull Request - State: closed - Opened by azazellochg 24 days ago

#276 - CTF correction step: generating defocus file failed

Issue - State: closed - Opened by wlugmayr 24 days ago - 4 comments

#275 - Tilt-series preprocess odd/even problem with excluded views

Issue - State: open - Opened by wlugmayr 24 days ago - 8 comments

#273 - 3.5.0

Pull Request - State: closed - Opened by azazellochg about 1 month ago - 3 comments

#272 - Jj ctfcorr intersect with interp

Pull Request - State: closed - Opened by JorMaister about 1 month ago - 1 comment

#270 - Fixed extensions in protocol_tomoReconstruction.py, only uses MRC_EXT now

Pull Request - State: closed - Opened by rdrighetto about 1 month ago - 1 comment

#269 - Fixes #268 by removing a mischievous comma

Pull Request - State: closed - Opened by rdrighetto about 1 month ago

#268 - ValueError: fname must be a string or file handle

Issue - State: closed - Opened by rdrighetto about 1 month ago - 1 comment

#266 - Fixed CTF correction

Pull Request - State: closed - Opened by Vilax about 2 months ago

#263 - report/save alignment quality

Issue - State: open - Opened by azazellochg 3 months ago
Labels: user's meeting

#262 - save alignment from etomo protocol output

Issue - State: open - Opened by azazellochg 3 months ago

#261 - Jj adapt correct ctf to diff sizes

Pull Request - State: closed - Opened by JorMaister 3 months ago

#260 - enhancing use and helps

Pull Request - State: closed - Opened by Vilax 3 months ago - 1 comment

#259 - Fi fid ali fix

Pull Request - State: closed - Opened by fede-pe 3 months ago

#258 - Jj add acq order 2 ctftomo

Pull Request - State: closed - Opened by JorMaister 3 months ago

#257 - fix fiducial alignment: output LM generation

Pull Request - State: closed - Opened by fede-pe 4 months ago

#255 - Review exlude views

Issue - State: open - Opened by pconesa 4 months ago

#254 - Release 3.3.0

Pull Request - State: closed - Opened by pconesa 4 months ago

#253 - - Prevent viewers from locking the screen focus.

Pull Request - State: closed - Opened by pconesa 4 months ago

#252 - bugfix for import ctf, set missing defocus flag

Pull Request - State: closed - Opened by azazellochg 5 months ago

#251 - close #250

Pull Request - State: closed - Opened by azazellochg 5 months ago

#250 - do not use tempfile in the viewer to create tlt file

Issue - State: closed - Opened by azazellochg 5 months ago
Labels: bug

#249 - oddEven fixes

Pull Request - State: closed - Opened by Vilax 5 months ago

#248 - Remove fiducials not working

Issue - State: open - Opened by Vilax 6 months ago - 1 comment

#247 - Review how the alignments are applied to the odd even in CTF correction

Issue - State: closed - Opened by Vilax 6 months ago - 1 comment

#246 - Review imod CTF correction with excluded views

Issue - State: open - Opened by pconesa 6 months ago

#245 - add new version

Pull Request - State: closed - Opened by azazellochg 6 months ago

#244 - add version 4.11.25

Issue - State: closed - Opened by azazellochg 6 months ago

#243 - remove plugin-specific import CTF protocol

Pull Request - State: closed - Opened by azazellochg 6 months ago - 3 comments

#242 - Added option -SuperSampleFactor to tomo reconstruction protocol (tilt)

Pull Request - State: closed - Opened by rdrighetto 6 months ago - 1 comment

#241 - hotfix ctf alignment

Pull Request - State: closed - Opened by Vilax 7 months ago

#240 - Prevent viewers from locking the screen focus. Version bumped.

Pull Request - State: closed - Opened by JorMaister 7 months ago

#239 - 3.2.4: Releasing even odd fix

Pull Request - State: closed - Opened by pconesa 7 months ago

#238 - Hotfix: odd even bug with interpolation fixed

Pull Request - State: closed - Opened by Vilax 7 months ago - 1 comment

#237 - eTomo is not capturing CTF estimations

Issue - State: open - Opened by fede-pe 7 months ago

#236 - Release 3.2.3

Pull Request - State: closed - Opened by JorMaister 7 months ago

#234 - declare requirements.txt

Pull Request - State: closed - Opened by pconesa 7 months ago

#233 - 3.2.2: - Add requirements

Pull Request - State: closed - Opened by pconesa 7 months ago

#232 - Add requirements

Pull Request - State: closed - Opened by JorMaister 7 months ago

#231 - Update plugin version

Pull Request - State: closed - Opened by fonsecareyna82 7 months ago

#230 - Update python-package.yml

Pull Request - State: closed - Opened by fonsecareyna82 7 months ago

#229 - Update python-package.yml

Pull Request - State: closed - Opened by fonsecareyna82 7 months ago

#228 - fixing CTF issue

Pull Request - State: closed - Opened by Vilax 7 months ago

#227 - V3.2.0

Pull Request - State: closed - Opened by Vilax 7 months ago - 2 comments

#226 - Oddevenfixes

Pull Request - State: closed - Opened by Vilax 8 months ago

#225 - Fi feature error tolerancy

Pull Request - State: closed - Opened by fede-pe 8 months ago

#224 - make tomo rec error tolerant

Pull Request - State: closed - Opened by fede-pe 8 months ago

#223 - release 3.2.0

Pull Request - State: closed - Opened by azazellochg 8 months ago - 2 comments

#222 - Possible output xray eraser

Pull Request - State: closed - Opened by MartinSalinas98 8 months ago
Labels: enhancement

#221 - make ctf correction tolerant to errors

Pull Request - State: closed - Opened by fede-pe 8 months ago

#220 - make ctf auomatic estimation tolerant to errors

Pull Request - State: closed - Opened by fede-pe 8 months ago

#219 - Aretomofix

Pull Request - State: closed - Opened by Vilax 8 months ago - 7 comments

#218 - Imod viewer locks the GUI

Issue - State: closed - Opened by pconesa 9 months ago - 1 comment

#217 - Added possible outputs

Pull Request - State: closed - Opened by MartinSalinas98 9 months ago
Labels: enhancement

#215 - - fix: interpolated flag is now set when correcting the CTFs

Pull Request - State: closed - Opened by pconesa 10 months ago

#214 - Imod -Fiducial alignemnt interpolated with TM

Issue - State: closed - Opened by fede-pe 10 months ago - 3 comments

#212 - clear odd/even for the outputs if not used

Pull Request - State: closed - Opened by azazellochg 10 months ago

#211 - Binning

Pull Request - State: closed - Opened by azazellochg 10 months ago

#210 - Use new parameters in Landmark model

Pull Request - State: closed - Opened by fede-pe 10 months ago

#209 - tomo normalization bug in dimensions

Pull Request - State: closed - Opened by Vilax 11 months ago

#208 - On the fly binning for display in 3dmod

Pull Request - State: closed - Opened by rdrighetto 11 months ago - 3 comments

#207 - Adding tilt angle, trimming and documentation enhanced

Pull Request - State: closed - Opened by Vilax 11 months ago

#206 - 3.1.10

Pull Request - State: closed - Opened by azazellochg 11 months ago - 2 comments

#205 - fix version

Pull Request - State: closed - Opened by pconesa 11 months ago

#204 - 3.1.9

Pull Request - State: closed - Opened by azazellochg 11 months ago - 1 comment

#203 - fixing dose

Pull Request - State: closed - Opened by Vilax 12 months ago - 1 comment

#202 - fiducial alignment and CTF correction do not store the proper dose per image

Issue - State: closed - Opened by Vilax 12 months ago - 3 comments
Labels: bug

#201 - fixing excluded views in text file

Pull Request - State: closed - Opened by Vilax 12 months ago

#199 - exclude views

Issue - State: closed - Opened by Vilax about 1 year ago - 11 comments

#198 - IMOD Coarse Alignement within Scipion

Issue - State: closed - Opened by fjchichon about 1 year ago - 3 comments
Labels: help wanted

#197 - release devel

Pull Request - State: closed - Opened by pconesa about 1 year ago

#196 - - Reconstruction:

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#195 - Releasing 3.1.7

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#194 - odd-even implemented

Pull Request - State: closed - Opened by Vilax over 1 year ago - 1 comment

#193 - Imod CTF seems to loose alignment information

Issue - State: closed - Opened by Vilax over 1 year ago - 1 comment

#192 - - Fix: Xray erser when there is alignment.

Pull Request - State: closed - Opened by pconesa over 1 year ago

#191 - icon added

Pull Request - State: closed - Opened by pconesa over 1 year ago - 3 comments

#190 - imod - import CTF

Issue - State: closed - Opened by Vilax over 1 year ago - 2 comments

#189 - Fix scheduling

Pull Request - State: closed - Opened by pconesa over 1 year ago

#188 - etomo aligned TS are interpolated, axis = 0

Pull Request - State: closed - Opened by azazellochg over 1 year ago

#187 - releasing devel

Pull Request - State: closed - Opened by pconesa over 1 year ago