scipion-em/scipion-em-imod issues and pull requests

#313 - Mh browserview

Pull Request - State: open - Opened by MohamadHarastani 23 days ago - 1 comment

#312 - add imod 5.1 support

Issue - State: open - Opened by azazellochg about 1 month ago

#311 - Jj add brt

Pull Request - State: open - Opened by JorMaister about 1 month ago - 3 comments

#310 - Gs update

Pull Request - State: closed - Opened by azazellochg about 2 months ago - 1 comment

#309 - imod ctf correction fails

Issue - State: open - Opened by azazellochg about 2 months ago

#308 - TestImodTomoProjection fails in buildbot devel

Issue - State: open - Opened by azazellochg about 2 months ago
Labels: bug

#307 - Release 3.6.1

Pull Request - State: closed - Opened by JorMaister 2 months ago - 1 comment

#306 - Jj update compatibility em tomo

Pull Request - State: closed - Opened by JorMaister 3 months ago - 2 comments

#305 - check sorting by TS_ID in the imod viewer

Issue - State: open - Opened by azazellochg 3 months ago
Labels: user's meeting

#304 - going from etomo interactive after tomo positioning to imod reconstruction protocol

Issue - State: open - Opened by azazellochg 3 months ago
Labels: user's meeting

#303 - etomo cannot be continued

Issue - State: open - Opened by azazellochg 4 months ago
Labels: bug

#302 - Executionmode

Pull Request - State: closed - Opened by pconesa 4 months ago - 1 comment

#301 - close #271

Pull Request - State: closed - Opened by azazellochg 4 months ago - 1 comment

#300 - Release 3.6.0

Pull Request - State: closed - Opened by JorMaister 4 months ago - 1 comment

#299 - Using absolute links inside the tmp directory to fix SCIPION_SCRATCH issue

Pull Request - State: closed - Opened by oierlauzi 4 months ago - 3 comments
Labels: enhancement

#298 - add 3D ctf correction by IMOD

Issue - State: open - Opened by azazellochg 4 months ago - 3 comments

#297 - ImodHandler does not work properly

Issue - State: open - Opened by azazellochg 4 months ago
Labels: bug

#296 - Symbolic links are broken when defining SCIPION_SCRATCH

Issue - State: closed - Opened by oierlauzi 4 months ago - 5 comments
Labels: bug

#295 - minor formatting

Pull Request - State: closed - Opened by azazellochg 4 months ago - 1 comment

#294 - Jj add excluded views management

Pull Request - State: closed - Opened by JorMaister 5 months ago - 5 comments

#293 - Jj bring az even odd

Pull Request - State: closed - Opened by JorMaister 5 months ago - 5 comments

#292 - Jj add tests tcl

Pull Request - State: closed - Opened by JorMaister 6 months ago - 3 comments

#291 - add a protocol for ctf handedness test

Issue - State: open - Opened by azazellochg 6 months ago - 1 comment

#290 - Update CHANGES.txt

Pull Request - State: closed - Opened by JorMaister 6 months ago - 1 comment

#289 - refactor part 2

Pull Request - State: closed - Opened by azazellochg 7 months ago - 1 comment

#288 - Expand the tests with the TCL

Issue - State: closed - Opened by JorMaister 7 months ago - 2 comments
Labels: enhancement

#287 - Modified etomo protocol to enhance usability of outputs downstream

Pull Request - State: closed - Opened by rdrighetto 7 months ago - 4 comments

#286 - Expand the matching files criteria in the protocol import transformat…

Pull Request - State: closed - Opened by JorMaister 7 months ago

#285 - check etomo output landmarks creation

Issue - State: open - Opened by azazellochg 7 months ago

#284 - why are IMOD_DIR IMOD_PATH cleared?

Issue - State: closed - Opened by truatpasteurdotfr 7 months ago - 1 comment

#283 - Fixed bug that prevented etomo from opening when TS had excluded views created with Tomo viewer subset

Pull Request - State: closed - Opened by rdrighetto 7 months ago

#282 - Gs refactor

Pull Request - State: closed - Opened by azazellochg 7 months ago - 6 comments

#281 - check default values

Issue - State: closed - Opened by azazellochg 8 months ago

#280 - 3.5.1

Pull Request - State: closed - Opened by azazellochg 8 months ago

#279 - condition on adjust densities

Pull Request - State: closed - Opened by Vilax 8 months ago

#278 - - CTF correction: get rid of the decorator. Manage the failed TS in…

Pull Request - State: closed - Opened by JorMaister 8 months ago - 7 comments

#277 - housekeeping

Pull Request - State: closed - Opened by azazellochg 8 months ago

#276 - CTF correction step: generating defocus file failed

Issue - State: closed - Opened by wlugmayr 8 months ago - 4 comments

#275 - Tilt-series preprocess odd/even problem with excluded views

Issue - State: closed - Opened by wlugmayr 8 months ago - 9 comments

#274 - The excluded views are not taking into account byt protocols that work with TS

Issue - State: closed - Opened by Vilax 8 months ago - 1 comment

#273 - 3.5.0

Pull Request - State: closed - Opened by azazellochg 8 months ago - 3 comments

#272 - Jj ctfcorr intersect with interp

Pull Request - State: closed - Opened by JorMaister 8 months ago - 1 comment

#271 - protocol_tomoReconstruction.py should clean up unused files

Issue - State: closed - Opened by rdrighetto 8 months ago - 1 comment

#270 - Fixed extensions in protocol_tomoReconstruction.py, only uses MRC_EXT now

Pull Request - State: closed - Opened by rdrighetto 8 months ago - 1 comment

#269 - Fixes #268 by removing a mischievous comma

Pull Request - State: closed - Opened by rdrighetto 8 months ago

#268 - ValueError: fname must be a string or file handle

Issue - State: closed - Opened by rdrighetto 8 months ago - 1 comment

#267 - Protocol was looking for odd/even input stacks in extra, but they are in tmp

Pull Request - State: closed - Opened by rdrighetto 8 months ago

#266 - Fixed CTF correction

Pull Request - State: closed - Opened by Vilax 9 months ago

#265 - Added tapering by default and option for linear interpolation in apply transform protocol

Pull Request - State: closed - Opened by rdrighetto 9 months ago

#264 - Import Transformation matrix should allow a pattern with the {TsId

Issue - State: closed - Opened by Vilax 9 months ago

#263 - report/save alignment quality

Issue - State: open - Opened by azazellochg 9 months ago
Labels: user's meeting

#262 - save alignment from etomo protocol output

Issue - State: closed - Opened by azazellochg 10 months ago

#261 - Jj adapt correct ctf to diff sizes

Pull Request - State: closed - Opened by JorMaister 10 months ago

#260 - enhancing use and helps

Pull Request - State: closed - Opened by Vilax 10 months ago - 1 comment

#259 - Fi fid ali fix

Pull Request - State: closed - Opened by fede-pe 10 months ago

#258 - Jj add acq order 2 ctftomo

Pull Request - State: closed - Opened by JorMaister 10 months ago

#257 - fix fiducial alignment: output LM generation

Pull Request - State: closed - Opened by fede-pe 11 months ago

#256 - ImodViewer could be used to visualize any 2D/3D data (or at least MRC maps like subtomogram averages and templates generated from PDB)

Issue - State: open - Opened by pconesa 11 months ago - 1 comment

#255 - Review exlude views

Issue - State: closed - Opened by pconesa 11 months ago - 1 comment

#254 - Release 3.3.0

Pull Request - State: closed - Opened by pconesa 11 months ago

#253 - - Prevent viewers from locking the screen focus.

Pull Request - State: closed - Opened by pconesa 11 months ago

#252 - bugfix for import ctf, set missing defocus flag

Pull Request - State: closed - Opened by azazellochg 12 months ago

#251 - close #250

Pull Request - State: closed - Opened by azazellochg 12 months ago

#250 - do not use tempfile in the viewer to create tlt file

Issue - State: closed - Opened by azazellochg 12 months ago
Labels: bug

#249 - oddEven fixes

Pull Request - State: closed - Opened by Vilax 12 months ago

#248 - Remove fiducials not working

Issue - State: open - Opened by Vilax about 1 year ago - 1 comment

#247 - Review how the alignments are applied to the odd even in CTF correction

Issue - State: closed - Opened by Vilax about 1 year ago - 1 comment

#246 - Review imod CTF correction with excluded views

Issue - State: closed - Opened by pconesa about 1 year ago - 1 comment

#245 - add new version

Pull Request - State: closed - Opened by azazellochg about 1 year ago

#244 - add version 4.11.25

Issue - State: closed - Opened by azazellochg about 1 year ago

#243 - remove plugin-specific import CTF protocol

Pull Request - State: closed - Opened by azazellochg about 1 year ago - 3 comments

#242 - Added option -SuperSampleFactor to tomo reconstruction protocol (tilt)

Pull Request - State: closed - Opened by rdrighetto about 1 year ago - 1 comment

#241 - hotfix ctf alignment

Pull Request - State: closed - Opened by Vilax about 1 year ago

#240 - Prevent viewers from locking the screen focus. Version bumped.

Pull Request - State: closed - Opened by JorMaister about 1 year ago

#239 - 3.2.4: Releasing even odd fix

Pull Request - State: closed - Opened by pconesa about 1 year ago

#238 - Hotfix: odd even bug with interpolation fixed

Pull Request - State: closed - Opened by Vilax about 1 year ago - 1 comment

#237 - eTomo is not capturing CTF estimations

Issue - State: open - Opened by fede-pe about 1 year ago

#236 - Release 3.2.3

Pull Request - State: closed - Opened by JorMaister about 1 year ago

#235 - requirements were not specified to be packaged in the setup. Version …

Pull Request - State: closed - Opened by JorMaister about 1 year ago

#234 - declare requirements.txt

Pull Request - State: closed - Opened by pconesa about 1 year ago

#233 - 3.2.2: - Add requirements

Pull Request - State: closed - Opened by pconesa about 1 year ago

#232 - Add requirements

Pull Request - State: closed - Opened by JorMaister about 1 year ago

#231 - Update plugin version

Pull Request - State: closed - Opened by fonsecareyna82 about 1 year ago

#230 - Update python-package.yml

Pull Request - State: closed - Opened by fonsecareyna82 about 1 year ago

#229 - Update python-package.yml

Pull Request - State: closed - Opened by fonsecareyna82 about 1 year ago

#228 - fixing CTF issue

Pull Request - State: closed - Opened by Vilax about 1 year ago

#227 - V3.2.0

Pull Request - State: closed - Opened by Vilax about 1 year ago - 2 comments

#226 - Oddevenfixes

Pull Request - State: closed - Opened by Vilax about 1 year ago

#225 - Fi feature error tolerancy

Pull Request - State: closed - Opened by fede-pe about 1 year ago

#224 - make tomo rec error tolerant

Pull Request - State: closed - Opened by fede-pe about 1 year ago

#223 - release 3.2.0

Pull Request - State: closed - Opened by azazellochg about 1 year ago - 2 comments

#222 - Possible output xray eraser

Pull Request - State: closed - Opened by MartinSalinas98 about 1 year ago
Labels: enhancement

#221 - make ctf correction tolerant to errors

Pull Request - State: closed - Opened by fede-pe about 1 year ago

#220 - make ctf auomatic estimation tolerant to errors

Pull Request - State: closed - Opened by fede-pe about 1 year ago

#219 - Aretomofix

Pull Request - State: closed - Opened by Vilax about 1 year ago - 7 comments

#218 - Imod viewer locks the GUI

Issue - State: closed - Opened by pconesa over 1 year ago - 1 comment

#217 - Added possible outputs

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago
Labels: enhancement

GitHub / scipion-em/scipion-em-imod issues and pull requests