Ecosyste.ms: Issues

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GitHub / scipion-em/scipion-em-emantomo issues and pull requests

#116 - Jj add validations

Pull Request - State: open - Opened by JorMaister 7 months ago - 1 comment

#114 - Template matching only picks at hte center of the tomogram

Issue - State: open - Opened by JorMaister 10 months ago
Labels: bug

#113 - Update the acquisition order in the CTFTomo objects

Pull Request - State: closed - Opened by JorMaister 10 months ago - 1 comment

#111 - Release 3.3.1

Pull Request - State: closed - Opened by JorMaister 10 months ago - 1 comment

#110 - Jj fix extract from ts order

Pull Request - State: closed - Opened by JorMaister 11 months ago - 1 comment

#109 - TS align & tomo rec: The tomograms are generated even if not requested

Issue - State: closed - Opened by JorMaister 11 months ago - 1 comment
Labels: bug

#108 - Interpolated TS has wrong sampling rate

Issue - State: closed - Opened by JorMaister 11 months ago
Labels: bug

#107 - Integrate a protocol to check the handeness

Issue - State: open - Opened by JorMaister 11 months ago
Labels: enhancement

#106 - Jj more fixes classic sta

Pull Request - State: closed - Opened by JorMaister 11 months ago - 1 comment

#105 - Jj small fixes update tests

Pull Request - State: closed - Opened by JorMaister 11 months ago - 1 comment

#104 - Extract subtomograms only allowed from the picked tomogram

Issue - State: closed - Opened by Vilax 11 months ago - 2 comments

#103 - If template matching does not find anything, throw an exception

Issue - State: closed - Opened by JorMaister 11 months ago - 8 comments

#102 - template matching fail with o symmetry

Issue - State: open - Opened by Vilax 12 months ago - 1 comment
Labels: enhancement

#101 - Acquisition info in extract subtomograms

Issue - State: open - Opened by Vilax 12 months ago - 1 comment

#100 - subtomogram alignment protocol does not store the transformation matrix

Issue - State: closed - Opened by Vilax 12 months ago - 3 comments

#99 - Release 3.3.0

Pull Request - State: closed - Opened by JorMaister 12 months ago - 1 comment

#98 - Jj fix template

Pull Request - State: closed - Opened by JorMaister 12 months ago - 1 comment

#97 - Jj fix fiducials

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#96 - Jj fixes from the workshop

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#95 - Add eman as tomogram viewer

Issue - State: open - Opened by pconesa about 1 year ago

#94 - Average not working with particles refined with the PPPT approach

Issue - State: closed - Opened by JorMaister about 1 year ago
Labels: bug

#93 - Check emantomo conda env tensorflow dependencies

Issue - State: closed - Opened by JorMaister about 1 year ago
Labels: todo

#91 - Jj viewer not locking gui

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#90 - Release 3.2.3

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#89 - Hotfix: add templates dir to package_data in setup

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#88 - fix pypi release

Pull Request - State: closed - Opened by pconesa about 1 year ago - 1 comment

#87 - Fix setup. Version bumped.

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#86 - v3.2.1:

Pull Request - State: closed - Opened by pconesa about 1 year ago - 1 comment

#85 - * Version bumped.

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#84 - v3.2.0:

Pull Request - State: closed - Opened by pconesa about 1 year ago

#83 - Jj emantomo 2.99.52 pppt

Pull Request - State: closed - Opened by JorMaister about 1 year ago - 1 comment

#81 - releeasing 3.1.5

Pull Request - State: closed - Opened by pconesa over 1 year ago

#80 - Jj fix class list in viewer

Pull Request - State: closed - Opened by JorMaister over 1 year ago - 1 comment

#79 - release 3.1.4

Pull Request - State: closed - Opened by pconesa over 1 year ago

#77 - PCA error

Issue - State: closed - Opened by Vilax over 1 year ago - 1 comment

#76 - Copied all acquisition data

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago
Labels: bug

#75 - Subtomograms extraction from tomogram: Aquisition attributes lost

Issue - State: closed - Opened by MartinSalinas98 over 1 year ago
Labels: bug

#73 - Allow interation with scipion when emanDataViewer dialog is open

Issue - State: open - Opened by fede-pe over 1 year ago
Labels: enhancement

#72 - update merge PR

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#71 - fixes tests

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#70 - Fix test: output name renamed

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#69 - release 3.1.2

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#68 - - Coordinates extraction extracts also from subtomograms.

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#67 - Jj extraction fix - ready to be released

Pull Request - State: closed - Opened by JorMaister almost 2 years ago

#66 - PCA-Kmean classification averages lost in visualization

Issue - State: closed - Opened by Vilax almost 2 years ago - 1 comment

#65 - Enhancing the performance of the convert

Pull Request - State: closed - Opened by Vilax almost 2 years ago

#64 - Fixed test crashing

Pull Request - State: closed - Opened by MartinSalinas98 almost 2 years ago - 1 comment

#63 - releasing devel

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#62 - Missing_Dependencies hint suggestion

Issue - State: closed - Opened by wlugmayr about 2 years ago - 1 comment

#61 - Bump version, update CHANGES.txt

Pull Request - State: closed - Opened by JorMaister about 2 years ago - 2 comments

#60 - Jj sta classic - release

Pull Request - State: closed - Opened by JorMaister about 2 years ago

#59 - do not download dataset on listing tests

Pull Request - State: closed - Opened by pconesa about 2 years ago

#58 - release devel

Pull Request - State: closed - Opened by pconesa about 2 years ago

#57 - Master

Pull Request - State: closed - Opened by pconesa about 2 years ago

#56 - Jj fix subtilt halves

Pull Request - State: closed - Opened by JorMaister about 2 years ago

#55 - accumulated dose is lost in the tilt series alignment

Issue - State: closed - Opened by Vilax about 2 years ago - 1 comment

#54 - Extraction from tomogram or tilt series has errors

Issue - State: closed - Opened by MohamadHarastani about 2 years ago - 1 comment

#53 - Pass absolute path in the mask

Pull Request - State: closed - Opened by pconesa about 2 years ago

#51 - Register FSC in refinement

Pull Request - State: closed - Opened by pconesa about 2 years ago

#50 - Extraction from tomo bug fix

Pull Request - State: closed - Opened by DavidHerreros about 2 years ago

#49 - extract coordinates and binning.

Issue - State: closed - Opened by pconesa about 2 years ago - 1 comment

#48 - Update setup.py

Pull Request - State: closed - Opened by pconesa over 2 years ago

#47 - releasing test

Pull Request - State: closed - Opened by pconesa over 2 years ago

#46 - output average in mrc

Pull Request - State: closed - Opened by pconesa over 2 years ago

#43 - Use iterSubtomos to have proper access to the coordinates and its tom…

Pull Request - State: closed - Opened by pconesa over 2 years ago

#42 - Defines possible outputs and uses then in tests for some protocols.

Pull Request - State: closed - Opened by pconesa almost 3 years ago - 1 comment

#41 - Emantomo: New improvements

Pull Request - State: closed - Opened by DavidHerreros almost 3 years ago

#40 - Fix refinement no tomos

Pull Request - State: closed - Opened by pconesa almost 3 years ago

#39 - Fix refinement no tomos

Pull Request - State: closed - Opened by pconesa almost 3 years ago

#38 - Update publish_and_tag.yml

Pull Request - State: closed - Opened by pconesa almost 3 years ago

#37 - STA protocols reordered

Pull Request - State: closed - Opened by DavidHerreros almost 3 years ago

#36 - Cuda fixes

Pull Request - State: closed - Opened by DavidHerreros about 3 years ago

#35 - Error computing CTF

Issue - State: closed - Opened by rmarabini about 3 years ago

#34 - EmanTomo Protocol failed object has not attribute '_tsld'

Issue - State: closed - Opened by DcShepherd about 3 years ago

#33 - The following plugins didn't match available plugin names

Issue - State: closed - Opened by FraaaMazzz about 3 years ago - 6 comments

#32 - Workshop

Pull Request - State: closed - Opened by JorMaister about 3 years ago

#31 - cancel parallel section

Pull Request - State: closed - Opened by pconesa about 3 years ago

#30 - ctf protocol updated

Pull Request - State: closed - Opened by Vilax about 3 years ago

#29 - ctf protocol updated

Pull Request - State: closed - Opened by Vilax about 3 years ago

#28 - new protocols

Pull Request - State: closed - Opened by Vilax about 3 years ago

#27 - new protocols

Pull Request - State: closed - Opened by Vilax about 3 years ago

#26 - Emantomo: New installation and protocols.conf

Pull Request - State: closed - Opened by DavidHerreros about 3 years ago

#25 - New functionalities

Pull Request - State: closed - Opened by DavidHerreros over 3 years ago

#24 - Jj extract match by ts

Pull Request - State: closed - Opened by JorMaister over 3 years ago

#23 - Add the new import required attributes to the tests.

Pull Request - State: closed - Opened by JorMaister over 3 years ago

#22 - Eman tilt matrix convention

Pull Request - State: closed - Opened by DavidHerreros over 3 years ago

#21 - Jj fix extraction cshrink

Pull Request - State: closed - Opened by JorMaister over 3 years ago

#20 - * Getting the acquisition values and assigning to the subtomograms

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago - 1 comment

#19 - New tomo reconstruction workflow

Pull Request - State: closed - Opened by DavidHerreros over 3 years ago

#18 - Fixed binning of Tomograms based on eman outsize parameter

Pull Request - State: closed - Opened by DavidHerreros over 3 years ago

#17 - Remove "extra-" from path and use path parent basename

Pull Request - State: closed - Opened by pconesa over 3 years ago