scipion-em/scipion-em-eman2 issues and pull requests

#111 - add v2.99.63

Issue - State: open - Opened by azazellochg 2 months ago

#110 - 3.6.1

Pull Request - State: closed - Opened by azazellochg 7 months ago

#109 - add e2gmm protocol

Issue - State: open - Opened by azazellochg 8 months ago

#108 - add 2.99.55

Pull Request - State: closed - Opened by azazellochg 8 months ago

#107 - plugin update 3.6

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 1 comment

#106 - 3.5

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 4 comments

#105 - use new conda installer

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 2 comments

#104 - replace binaries with conda installer

Issue - State: closed - Opened by azazellochg over 1 year ago

#103 - 3.4.2

Pull Request - State: closed - Opened by azazellochg almost 2 years ago

#101 - 3.4.1

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#100 - add v2.99

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#99 - 3.3.3

Pull Request - State: closed - Opened by azazellochg over 2 years ago

#98 - Boxer and boxer auto protocols allows boxsize pointer

Pull Request - State: closed - Opened by danielmarchan3 almost 3 years ago

#97 - release 3.3.2

Pull Request - State: closed - Opened by azazellochg over 3 years ago - 2 comments
Labels: bug

#96 - Refine test is failing with 2.91

Issue - State: closed - Opened by pconesa over 3 years ago - 9 comments

#95 - add 2.91 binary

Pull Request - State: closed - Opened by azazellochg over 3 years ago - 2 comments

#94 - release 3.3

Pull Request - State: closed - Opened by azazellochg almost 4 years ago

#93 - check transformations

Issue - State: closed - Opened by azazellochg almost 4 years ago

#92 - V2.9

Pull Request - State: closed - Opened by azazellochg almost 4 years ago - 1 comment

#91 - release 3.2

Pull Request - State: closed - Opened by azazellochg almost 4 years ago

#90 - remove all tomo code

Pull Request - State: closed - Opened by azazellochg almost 4 years ago - 1 comment

#89 - tomo related code removed:

Pull Request - State: closed - Opened by pconesa almost 4 years ago - 3 comments

#88 - add e2 viewer for volumes, like for bsoft

Pull Request - State: closed - Opened by azazellochg almost 4 years ago - 2 comments

#87 - Actions

Pull Request - State: closed - Opened by azazellochg about 4 years ago

#86 - Fix template matching

Pull Request - State: closed - Opened by JorMaister about 4 years ago

#85 - set mpi var in the getEnviron

Issue - State: closed - Opened by azazellochg about 4 years ago - 1 comment

#84 - release 3.1.1

Pull Request - State: closed - Opened by azazellochg over 4 years ago

#83 - Fixes for subtomogram refinement

Pull Request - State: closed - Opened by DavidHerreros over 4 years ago

#82 - eman2.tests.test_protocols_eman.TestEmanTomoSubtomogramRefinement fails

Issue - State: closed - Opened by azazellochg over 4 years ago - 2 comments

#81 - Dh temp match fix

Pull Request - State: closed - Opened by pconesa over 4 years ago

#80 - * Modifying the way to install eman-3.0.0-alpha

Pull Request - State: closed - Opened by fonsecareyna82 over 4 years ago

#79 - Eman Tomo Fixes

Pull Request - State: closed - Opened by DavidHerreros over 4 years ago

#78 - Default EMAN_HOME 2.31.

Pull Request - State: closed - Opened by pconesa over 4 years ago

#77 - Fix validate

Pull Request - State: closed - Opened by pconesa over 4 years ago - 1 comment

#76 - Installation of new Eman version

Pull Request - State: closed - Opened by DavidHerreros over 4 years ago - 4 comments

#75 - Installation of new Eman version

Pull Request - State: closed - Opened by DavidHerreros over 4 years ago

#74 - Disable Template Matching

Pull Request - State: closed - Opened by DavidHerreros over 4 years ago

#73 - Jj update output tomo extraction

Pull Request - State: closed - Opened by JorMaister over 4 years ago

#72 - release 3.1.0

Pull Request - State: closed - Opened by azazellochg over 4 years ago - 1 comment

#70 - Proper implementation of parallelization

Pull Request - State: closed - Opened by adrianq over 4 years ago - 1 comment

#69 - set flip=1 by default

Issue - State: closed - Opened by azazellochg over 4 years ago

#68 - subtomo refinement output fails

Issue - State: closed - Opened by azazellochg over 4 years ago

#67 - all tomo protocols wrong mpi implementation

Issue - State: closed - Opened by azazellochg over 4 years ago

#66 - tomo initial model fails

Issue - State: closed - Opened by azazellochg over 4 years ago - 1 comment

#65 - Python3 migration

Pull Request - State: closed - Opened by azazellochg over 4 years ago - 4 comments

#64 - Tomo2python3

Pull Request - State: closed - Opened by adrianq over 4 years ago - 4 comments

#63 - Merge/python3 migration to tomo2python3

Pull Request - State: closed - Opened by adrianq over 4 years ago - 1 comment

#62 - use with open, list comprehension, remove 2.21, add 2.31 support

Pull Request - State: closed - Opened by azazellochg over 4 years ago - 3 comments

#61 - devel=master (1)

Pull Request - State: closed - Opened by azazellochg over 4 years ago - 1 comment

#60 - Subtomo volid

Pull Request - State: closed - Opened by adrianq over 4 years ago - 1 comment

#59 - Feature/new protocol tomo reconstruction

Pull Request - State: closed - Opened by tokland over 4 years ago - 1 comment

#58 - Add EmanProtTomoReconstruction protocol

Pull Request - State: closed - Opened by adrianq over 4 years ago - 3 comments

#57 - Fix/initial model summary references

Pull Request - State: closed - Opened by adrianq over 4 years ago - 1 comment

#56 - Add EmanProtTomoReconstruction protocol

Pull Request - State: closed - Opened by adrianq over 4 years ago - 2 comments

#55 - Fix/initial model summary references

Pull Request - State: closed - Opened by tokland over 4 years ago - 2 comments

#54 - Feature/eman gui

Pull Request - State: closed - Opened by DavidHerreros almost 5 years ago

#53 - Object of type Boolean is not JSON serializable

Issue - State: closed - Opened by azazellochg almost 5 years ago - 2 comments

#52 - ProtOutputTest not found

Issue - State: closed - Opened by azazellochg almost 5 years ago - 2 comments

#51 - fix extract from 'other' tomogram

Pull Request - State: closed - Opened by EstrellaFG almost 5 years ago - 1 comment

#50 - Using emlib

Pull Request - State: closed - Opened by delarosatrevin almost 5 years ago

#49 - scipion not found

Issue - State: closed - Opened by azazellochg almost 5 years ago - 1 comment

#48 - Use precedent api instead of vol

Pull Request - State: closed - Opened by adrianq almost 5 years ago

#47 - Feature/match temp padding

Pull Request - State: closed - Opened by DavidHerreros almost 5 years ago

#46 - Changes needed to pass all tests in scipion3.

Pull Request - State: closed - Opened by JorMaister almost 5 years ago

#45 - Feature/multi reference

Pull Request - State: closed - Opened by adrianq almost 5 years ago - 4 comments

#44 - Feature/precedents

Pull Request - State: closed - Opened by adrianq almost 5 years ago

#43 - Use importFromPlugin for tomo protocols and remove try/catch

Pull Request - State: closed - Opened by adrianq almost 5 years ago - 7 comments

#42 - Using importFromPlugin() for tomo.

Issue - State: closed - Opened by dmaluenda almost 5 years ago - 1 comment

#41 - Feature/coordinate file

Pull Request - State: closed - Opened by DavidHerreros about 5 years ago

#40 - Feature/match template fixes

Pull Request - State: closed - Opened by DavidHerreros about 5 years ago

#39 - Fix/initialmodel subtomo ref fixes

Pull Request - State: closed - Opened by adrianq about 5 years ago

#38 - check new e2boxer in streaming

Issue - State: closed - Opened by azazellochg about 5 years ago

#37 - Fixes initial model and subtomo ref

Pull Request - State: closed - Opened by adrianq about 5 years ago

#36 - Tomo - Subtomogram refinement and Initial Model

Pull Request - State: closed - Opened by adrianq about 5 years ago - 3 comments

#35 - Import coordinates in tomo_boxing

Pull Request - State: closed - Opened by EstrellaFG about 5 years ago

#34 - Template Matching and SetOfTomograms modifications

Pull Request - State: closed - Opened by DavidHerreros about 5 years ago - 1 comment

#33 - Feature/extract params2

Pull Request - State: closed - Opened by EstrellaFG about 5 years ago - 2 comments

#32 - Analyze Results in TestEmanTiltValidate

Issue - State: closed - Opened by delarosatrevin over 5 years ago - 2 comments

#31 - release 1.0.5

Pull Request - State: closed - Opened by azazellochg over 5 years ago - 1 comment

#30 - add fsc obj to viewer

Pull Request - State: closed - Opened by azazellochg over 5 years ago

#29 - add batch options to boxer auto

Issue - State: closed - Opened by azazellochg over 5 years ago

#28 - add outputFSC to e2refine_easy

Issue - State: closed - Opened by azazellochg over 5 years ago - 1 comment

#27 - add new programs

Issue - State: open - Opened by azazellochg over 5 years ago

#26 - Feature/tomo extraction

Pull Request - State: closed - Opened by adrianq over 5 years ago

#25 - adding 2.3 support

Pull Request - State: closed - Opened by azazellochg over 5 years ago - 28 comments

#24 - Feature eman2 tests

Pull Request - State: closed - Opened by idelcano over 5 years ago

#23 - add EMAN2.3 to devel

Issue - State: closed - Opened by azazellochg over 5 years ago

#22 - Extract tomogram

Pull Request - State: closed - Opened by adrianq over 5 years ago - 6 comments

#21 - update readme

Pull Request - State: closed - Opened by azazellochg over 5 years ago

#20 - Tomogram Particle Picking

Pull Request - State: closed - Opened by adrianq over 5 years ago - 6 comments

#19 - return view for eman boxing viewer.

Pull Request - State: closed - Opened by pconesa over 5 years ago

#18 - add getHalfMaps func

Issue - State: closed - Opened by azazellochg over 5 years ago - 1 comment

#17 - Fixing the method iterOutputAttributes invocation to analyze the results

Pull Request - State: closed - Opened by fonsecareyna82 over 5 years ago

#16 - change EMAN2DIR to EMAN2_HOME

Issue - State: closed - Opened by azazellochg over 5 years ago

#15 - Allows pointer for boxSize parameter in Sparx

Pull Request - State: closed - Opened by dmaluenda over 5 years ago - 7 comments

#14 - fix sparx picker issues

Pull Request - State: closed - Opened by azazellochg almost 6 years ago - 1 comment

#13 - add sparx autopicking test

Issue - State: closed - Opened by azazellochg almost 6 years ago

#12 - sparx doesnt pick with version 2.21

Issue - State: closed - Opened by yaizar almost 6 years ago - 3 comments

#11 - visualize til validate

Issue - State: closed - Opened by rmarabini about 6 years ago - 1 comment

#10 - testEmanRefineEasy problem

Issue - State: closed - Opened by azazellochg about 6 years ago - 1 comment

GitHub / scipion-em/scipion-em-eman2 issues and pull requests