Ecosyste.ms: Issues

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GitHub / scipion-em/scipion-em-cryosparc2 issues and pull requests

#166 - deve to master

Pull Request - State: closed - Opened by fonsecareyna82 3 months ago

#165 - Change direct pointers to indirect pointers

Pull Request - State: closed - Opened by danielmarchan3 3 months ago
Labels: enhancement

#164 - JMK typos from course

Pull Request - State: closed - Opened by jamesmkrieger 3 months ago

#163 - avoid getting the version at inspect

Pull Request - State: closed - Opened by pconesa 4 months ago

#162 - adding use_ssd parameter in some protocols

Pull Request - State: closed - Opened by fonsecareyna82 4 months ago

#161 - installation hot fix

Pull Request - State: closed - Opened by fonsecareyna82 4 months ago

#160 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 4 months ago

#159 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 5 months ago

#158 - Add import coords from cryoSparc

Issue - State: open - Opened by JorMaister 5 months ago
Labels: user's meeting

#157 - * Add 3D flex protocols

Pull Request - State: closed - Opened by fonsecareyna82 5 months ago

#156 - fixing a compatibility bug

Pull Request - State: closed - Opened by fonsecareyna82 6 months ago

#155 - Compatibility with cryoSPARC v4.4.1

Pull Request - State: closed - Opened by fonsecareyna82 8 months ago

#154 - Blob picker and CTF estimation protocols

Pull Request - State: closed - Opened by fonsecareyna82 9 months ago

#153 - Compatibility with v4.4.0

Pull Request - State: closed - Opened by fonsecareyna82 11 months ago

#152 - * Handling stop jobs

Pull Request - State: closed - Opened by fonsecareyna82 11 months ago

#151 - Convert .cs to .star using the own approach

Issue - State: open - Opened by fonsecareyna82 11 months ago

#150 - Catch error when converting with pyem

Issue - State: closed - Opened by fonsecareyna82 11 months ago

#149 - Update cs2Start.py

Pull Request - State: closed - Opened by mmmtnez 12 months ago - 1 comment

#148 - change 00%s by .zfill(5)

Pull Request - State: closed - Opened by rmarabini 12 months ago - 3 comments

#147 - Compatibily wit v4.3.1

Pull Request - State: closed - Opened by fonsecareyna82 about 1 year ago

#146 - Generation of star files using relion cancelled (not robust in all ca…

Pull Request - State: closed - Opened by pconesa about 1 year ago - 2 comments

#145 - Update README.rst

Pull Request - State: closed - Opened by pconesa about 1 year ago

#144 - use cryosparc output as relion input

Issue - State: closed - Opened by rmarabini over 1 year ago - 10 comments

#143 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#142 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#141 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#140 - Cs flex

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#139 - ProtCryoSparcHomogeneousReconstruct error

Issue - State: open - Opened by rmarabini over 1 year ago

#138 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago - 1 comment

#137 - Cs flex

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#136 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#135 - Updating the scritp to convert a .cs file to a .star

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#134 - Compatibility with cryoSPARC v4.2

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#133 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#132 - Create pyem env

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#131 - Bump numpy from 1.18.4 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#130 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago

#129 - merging devel with master

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago

#128 - * Fixed an error related to Phase Randomized Masket Map calculation

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago

#127 - update the way the outfile names are computed

Pull Request - State: closed - Opened by rmarabini almost 2 years ago - 3 comments

#126 - devel to master. Realease 3.3.18

Pull Request - State: closed - Opened by fonsecareyna82 about 2 years ago

#125 - * Allow to import .cs particles files

Pull Request - State: closed - Opened by fonsecareyna82 about 2 years ago

#124 - add CTF to output

Pull Request - State: closed - Opened by rmarabini about 2 years ago

#122 - Use indirect pointer to particles in SetOfClasses2D

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#121 - * Fixing an error loading the lanes

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#120 - * Compatibility with cryoSPARC v3.3.2

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#119 - Update publish_and_tag.yml

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#118 - Update README.rst

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#117 - Update README.rst

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#116 - Update publish_and_tag.yml

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#115 - devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#114 - * Allowing a cluster installation

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#112 - Merging devel with master

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#111 - * Fixing an error related with the metadata persistence

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#110 - * Fixing an error related with the 3D classification with a mask

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#109 - * Fixing a bug taking the last iteration

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#107 - * Fixing a bug with viewers in the refinement protocols

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#106 - Pconesa fix viewer

Pull Request - State: closed - Opened by pconesa over 2 years ago

#105 - Viewer error: when protocol is stil running

Issue - State: closed - Opened by pconesa over 2 years ago

#104 - Merging devel with master

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#103 - Caps fix

Pull Request - State: closed - Opened by jamesmkrieger over 2 years ago

#102 - subtract proejction

Issue - State: closed - Opened by rmarabini over 2 years ago - 4 comments

#101 - Merging devel with master

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#100 - Merging devel with master

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#99 - Merging devel with master

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#97 - Merging devel to master

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#96 - Change metadata

Pull Request - State: closed - Opened by fonsecareyna82 over 2 years ago

#95 - Merging devel into master

Pull Request - State: closed - Opened by fonsecareyna82 almost 3 years ago

#94 - Adding homogeneous reconstruction protocol

Pull Request - State: closed - Opened by fonsecareyna82 almost 3 years ago

#93 - Offer CS as default option to view results

Pull Request - State: closed - Opened by pconesa almost 3 years ago

#92 - Import volumens with halfs

Issue - State: closed - Opened by fonsecareyna82 about 3 years ago

#91 - 2D classification is failing (seems like a pyem version issue)

Issue - State: closed - Opened by delarosatrevin about 3 years ago - 2 comments
Labels: bug

#90 - Devel to Master

Pull Request - State: closed - Opened by fonsecareyna82 about 3 years ago

#89 - Merge devel to master

Pull Request - State: closed - Opened by fonsecareyna82 about 3 years ago

#88 - output volumes in CS

Issue - State: closed - Opened by pconesa about 3 years ago

#87 - update action for mpi4py

Pull Request - State: closed - Opened by azazellochg about 3 years ago

#86 - particles without ctf information aren't allowed

Issue - State: closed - Opened by fonsecareyna82 over 3 years ago

#85 - Unnecessary workspaces-projects (w/p) created

Issue - State: open - Opened by delarosatrevin over 3 years ago - 1 comment

#84 - pandas should be in requirements.txt

Issue - State: closed - Opened by delarosatrevin over 3 years ago - 3 comments

#83 - "subtract particle" reassigne the particles IDs

Issue - State: open - Opened by fonsecareyna82 over 3 years ago

#82 - * Updating the plugin version

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#81 - * Compatibility with cryoSPARC v3.2

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#80 - Refactor to cryosparc v3.2

Issue - State: closed - Opened by fonsecareyna82 over 3 years ago

#79 - Big Refactorization

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#78 - Big refactorizaton

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#77 - cryoSPARC refactorization

Issue - State: closed - Opened by fonsecareyna82 over 3 years ago
Labels: enhancement

#76 - Update devel with master

Pull Request - State: closed - Opened by pconesa over 3 years ago

#75 - Fix sr 2d

Pull Request - State: closed - Opened by pconesa over 3 years ago

#74 - relion fails after plugin update in scipion

Issue - State: closed - Opened by gilcantero over 3 years ago - 10 comments
Labels: bug

#73 - Fixing the Symmetry Expansion protocol

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#72 - * Fixing the Symmetry Expansion protocol

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#71 - Adding Symmetry Expansion protocol

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#70 - * Adding Symmetry Expansion protocol

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#69 - Adding new protocols

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#68 - * Fixing an error with local refinement protocol

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#67 - Add new protocols

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago

#66 - Adding 3D Helical Refinement

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago