Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / scipion-em/scipion-em-continuousflex issues and pull requests

#195 - Devel

Pull Request - State: closed - Opened by MohamadHarastani 4 months ago - 1 comment

#194 - issue for installation

Issue - State: closed - Opened by zorowangtt 5 months ago - 1 comment

#193 - replace force flag

Pull Request - State: closed - Opened by azazellochg 8 months ago - 1 comment

#192 - conda: error: unrecognized arguments: --force

Issue - State: closed - Opened by zorowangtt 10 months ago - 2 comments

#191 - Pandas needed for importing Dynamo table in HEMNMA3D

Issue - State: open - Opened by xmzzaa about 1 year ago

#190 - Devel

Pull Request - State: closed - Opened by MohamadHarastani over 1 year ago

#189 - Fix bugs and recent developments in MDSPACE & MDTOMO

Pull Request - State: closed - Opened by mms29 over 1 year ago

#188 - Jmk typos

Pull Request - State: closed - Opened by jamesmkrieger over 1 year ago

#187 - Jmk improvements

Pull Request - State: open - Opened by jamesmkrieger over 1 year ago

#186 - Rv init fix

Pull Request - State: closed - Opened by mms29 over 1 year ago

#185 - Fix missing libraries (lapack/blas) in the compilation of GENESIS

Pull Request - State: closed - Opened by mms29 over 1 year ago

#184 - gen psf top using VMD_HOME

Pull Request - State: closed - Opened by jamesmkrieger over 1 year ago

#183 - BM4D and MWR tests pass without output

Issue - State: open - Opened by MohamadHarastani over 1 year ago

#182 - fixed installation of farneback

Pull Request - State: closed - Opened by MohamadHarastani over 1 year ago - 8 comments

#181 - Fixed the mistake on images synthesize

Pull Request - State: closed - Opened by mms29 over 1 year ago - 5 comments

#180 - New release MDTOMO v3.4.0

Pull Request - State: closed - Opened by mms29 over 1 year ago - 8 comments

#179 - Rv release MDTOMO v3.4.0

Pull Request - State: closed - Opened by mms29 over 1 year ago

#177 - MDTOMO/MDSPACE

Pull Request - State: closed - Opened by mms29 over 1 year ago - 1 comment

#176 - TestGENESIS 'which atdyn' error

Issue - State: open - Opened by wlugmayr over 1 year ago

#175 - TestHEMNMA_2 test fails

Issue - State: open - Opened by wlugmayr over 1 year ago

#174 - Reading Eman JSON file for subtomogram averaging

Pull Request - State: closed - Opened by mms29 almost 2 years ago

#173 - Upgrade to Genesis 2 + new software (SMOG) + fix

Pull Request - State: closed - Opened by mms29 almost 2 years ago

#172 - New release

Pull Request - State: closed - Opened by mms29 almost 2 years ago - 5 comments

#171 - pyworkflow to master

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#170 - TomoFlow Issues

Issue - State: closed - Opened by DcShepherd almost 2 years ago - 5 comments

#169 - Script for running GENESIS/MDSPACE in parallel using MPI

Pull Request - State: closed - Opened by mms29 almost 2 years ago - 5 comments

#168 - Devel

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago - 6 comments

#167 - Mh installation fix

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago - 1 comment

#166 - removing redundant conda activate

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#165 - Installation fixed

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#164 - installation works in devel

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#163 - separated the binaries

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#162 - reverted to conda env create after fixing manifest

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#161 - added the yaml files to manifest

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#160 - adjusting conda create environement

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#159 - version number update

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#158 - dropped env in conda create

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#157 - cleaner installation

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#156 - returning the links until found a better solution

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#155 - Update __init__.py

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#154 - allowed the conda environment to be installed first

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#153 - MDSPACE

Pull Request - State: closed - Opened by mms29 almost 2 years ago - 17 comments

#152 - Installation from the plugin manager is not working

Issue - State: closed - Opened by MohamadHarastani almost 2 years ago - 26 comments

#151 - Devel release

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#150 - Update __init__.py

Pull Request - State: closed - Opened by MohamadHarastani almost 2 years ago

#149 - added a protocol to synthesize atomic structures

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago - 2 comments

#147 - Mh conda

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago - 3 comments

#145 - GENESIS compilation failed with GCC 10 +

Pull Request - State: closed - Opened by mms29 about 2 years ago

#144 - Failing plugin installation

Issue - State: closed - Opened by albertmena about 2 years ago - 4 comments

#143 - Problem in lib path

Issue - State: closed - Opened by MohamadHarastani about 2 years ago

#142 - Mh deploy

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago

#141 - Devel

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago - 1 comment

#140 - Mh prerelease

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago - 3 comments

#138 - Test erorrs (Genesis and PDB dimred)

Issue - State: open - Opened by MohamadHarastani about 2 years ago - 10 comments

#137 - Mh conda

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago - 11 comments

#136 - Farneback does not compile with the latest version of setuptools

Issue - State: closed - Opened by MohamadHarastani about 2 years ago - 8 comments

#135 - IH Fix inference parameters

Pull Request - State: closed - Opened by ilyes-hm about 2 years ago

#134 - JMK parser fix to account for xmipp pseudoatom writing changes

Pull Request - State: open - Opened by jamesmkrieger about 2 years ago - 6 comments

#133 - Back to lapack 3.5.0 due to compilation errors with NMA code

Pull Request - State: closed - Opened by mms29 about 2 years ago - 14 comments

#132 - LAPACK ARPACK in continuousflex-org + MD-NMMD-Genesis 2.0 +Fix pdb dim red viewer

Pull Request - State: closed - Opened by mms29 over 2 years ago - 7 comments

#131 - Devel

Pull Request - State: closed - Opened by MohamadHarastani over 2 years ago

#130 - Updating version number and updating readme

Pull Request - State: closed - Opened by MohamadHarastani over 2 years ago

#129 - Devel merge

Pull Request - State: closed - Opened by MohamadHarastani over 2 years ago

#128 - Fix number of cpu used in tests + fix gui problem on pdb dim red viewer

Pull Request - State: closed - Opened by mms29 over 2 years ago

#127 - Update the code of Lapack and arpack

Issue - State: closed - Opened by MohamadHarastani over 2 years ago

#126 - NMMD improvements / Rigid Body align PDBs / PDB dim red

Pull Request - State: closed - Opened by mms29 over 2 years ago - 1 comment

#125 - minor fixes before release

Pull Request - State: closed - Opened by MohamadHarastani over 2 years ago

#124 - fix reference

Pull Request - State: closed - Opened by ilyes-hm over 2 years ago

#123 - Readme

Pull Request - State: closed - Opened by ilyes-hm over 2 years ago

#122 - DeepHEMNMA

Pull Request - State: closed - Opened by ilyes-hm over 2 years ago - 14 comments

#121 - Ih deep hemnma

Pull Request - State: closed - Opened by MohamadHarastani over 2 years ago

#120 - Mh merge deep hemnma

Pull Request - State: closed - Opened by MohamadHarastani over 2 years ago

#119 - Provide matlab compiler runtime to solve the problem of matlab dependency

Issue - State: closed - Opened by MohamadHarastani over 2 years ago
Labels: wontfix

#117 - Mh cuda solve

Pull Request - State: closed - Opened by MohamadHarastani over 2 years ago

#116 - New GENESIS version (1.7.1), PDB handler, separated NMA computation for NMMD

Pull Request - State: closed - Opened by mms29 almost 3 years ago

#115 - PDB dimensionality reduction improvements

Pull Request - State: closed - Opened by mms29 almost 3 years ago - 10 comments

#114 - Let the mpi/threads number be automatically set to avoid failing test…

Pull Request - State: closed - Opened by MohamadHarastani almost 3 years ago - 1 comment
Labels: enhancement

#113 - Parallel processing can be done for denoising volumes and missing wedge restoration

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago - 1 comment
Labels: enhancement

#112 - Parallel processing in subtomogram classification

Issue - State: open - Opened by MohamadHarastani almost 3 years ago
Labels: enhancement, help wanted

#111 - Fix for PyCuda conflicts

Pull Request - State: closed - Opened by MohamadHarastani almost 3 years ago

#110 - Parameters of HEMNMA-3D and STA are updated

Pull Request - State: closed - Opened by MohamadHarastani almost 3 years ago - 9 comments

#109 - For HEMNMA and HEMNMA-3D, add a "centroid PDB" when creating clusters

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago
Labels: enhancement, in progress

#107 - Replace all usages of mrcfile and spider_file3 by ImageHandler

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago - 11 comments
Labels: enhancement

#106 - Add low pass filtering when synthesizing images

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago
Labels: enhancement, in progress

#105 - Remove convert a PDB protocol

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago
Labels: in progress

#104 - Test protocol is needed for MWC and BM4D

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago
Labels: enhancement, in progress

#103 - Allow selecting the Cuda devices for mutli GPU processing in TomoFlow

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago
Labels: enhancement, in progress

#102 - Down scale the projected 3D optical flow and show HSV

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago
Labels: bug, enhancement, in progress

#101 - Improve the subtomogram averaging protocol

Issue - State: open - Opened by MohamadHarastani almost 3 years ago
Labels: enhancement, can wait a bit

#100 - For HEMNMA and HEMNMA-3D, if the input data is synthetic, add to the viewer a way to compute the errors

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago - 1 comment
Labels: enhancement, in progress

#99 - HEMNMA-3D and Subtomogram averaging angles and shifts

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago - 1 comment
Labels: enhancement, in progress

#98 - SetOfPDBs can be passed to image and volume synthesize protocols

Issue - State: open - Opened by MohamadHarastani almost 3 years ago
Labels: enhancement

#96 - Add that Matlab is needed for missing wedge correction and BM4D

Issue - State: closed - Opened by MohamadHarastani almost 3 years ago
Labels: documentation, in progress