scipion-em/scipion-app issues and pull requests

#197 - - Default viewers for some tomo sets: Masks, Meshes and Coordinates3D

Pull Request - State: closed - Opened by pconesa about 1 month ago - 1 comment

#196 - V3.7.0

Pull Request - State: closed - Opened by pconesa 2 months ago - 1 comment

#195 - Fix config --overwrite: scipion.template (deleted) not needed.

Pull Request - State: closed - Opened by pconesa 3 months ago - 1 comment

#194 - scipion-app 3.6.0: ./scipion3 config no longer working

Issue - State: closed - Opened by woutdenolf 3 months ago - 3 comments
Labels: bug

#193 - 3.6.0

Pull Request - State: closed - Opened by azazellochg 4 months ago - 1 comment

#192 - Fix fontref

Pull Request - State: closed - Opened by pconesa 4 months ago - 1 comment

#191 - releasing 3.5.0

Pull Request - State: closed - Opened by pconesa 5 months ago - 1 comment

#190 - Extending the CondaCommanDef class to allow environment creation using .yml files

Pull Request - State: closed - Opened by fonsecareyna82 5 months ago - 1 comment

#189 - downloadonly/buildonly flags for installp

Issue - State: open - Opened by azazellochg 6 months ago

#188 - Relsease 3.4

Pull Request - State: closed - Opened by pconesa 6 months ago - 2 comments

#187 - Replace pip internal command with subprocess call

Pull Request - State: closed - Opened by azazellochg 7 months ago - 2 comments

#186 - Variables

Pull Request - State: closed - Opened by pconesa 7 months ago - 1 comment

#185 - 3.3.1

Pull Request - State: closed - Opened by pconesa 8 months ago - 1 comment

#184 - Sprites

Pull Request - State: closed - Opened by pconesa 9 months ago - 1 comment

#183 - - Defining TomoDataViewer as the TiltSeries default viewer

Pull Request - State: closed - Opened by fonsecareyna82 9 months ago - 1 comment

#182 - Plugin manager error not shown

Issue - State: open - Opened by pconesa 11 months ago - 1 comment

#181 - remove extra dependency

Pull Request - State: closed - Opened by azazellochg 12 months ago - 1 comment

#180 - release 3.3.0

Pull Request - State: closed - Opened by pconesa almost 1 year ago - 1 comment

#179 - new python support

Pull Request - State: open - Opened by azazellochg about 1 year ago - 1 comment

#178 - tolerate missing cudabin

Pull Request - State: closed - Opened by pconesa about 1 year ago - 1 comment

#177 - best linux distro for installing Scipion

Issue - State: closed - Opened by ckywong about 1 year ago - 1 comment

#176 - add missing requirement, update version to match the changelog

Pull Request - State: closed - Opened by azazellochg about 1 year ago - 1 comment

#175 - typing_extensions missing in requirements

Issue - State: closed - Opened by azazellochg about 1 year ago
Labels: bug

#174 - - Exist code is not masked when running xmipp, relion etc commands

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#173 - uninstallb could remove associated conda envs

Issue - State: open - Opened by azazellochg over 1 year ago - 6 comments

#172 - Do not raise error when one of the CUDA env vars is not set

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 1 comment

#171 - RELION_CUDA_BIN definition error

Issue - State: closed - Opened by wlugmayr almost 2 years ago - 6 comments
Labels: bug

#170 - - Update message is green now

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#169 - fix template validation

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#168 - Improved installer

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 1 comment
Labels: enhancement

#167 - releasing devel

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#166 - Fixed command concatenation bug

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 2 comments
Labels: bug

#165 - Install helper: Python requirements.txt file not expected by default

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 1 comment
Labels: enhancement

#164 - Added option to import/export commands between install helpers

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 1 comment
Labels: enhancement

#163 - - SetOfVolumes and SetOfParticles have DataViewer as the default one.

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#162 - * Organizing a workflow after importing from .json file

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago - 1 comment

#161 - Added install helper

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 6 comments
Labels: enhancement

#160 - * Loading the plugin variables

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago - 1 comment

#159 - * Catching an installation error

Pull Request - State: closed - Opened by fonsecareyna82 over 1 year ago - 1 comment

#158 - close #154

Pull Request - State: closed - Opened by azazellochg over 1 year ago - 1 comment

#157 - Use main color config variable

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#156 - Tweaks

Pull Request - State: closed - Opened by pconesa almost 2 years ago - 1 comment

#155 - Update outdated

Pull Request - State: closed - Opened by azazellochg almost 2 years ago - 2 comments

#154 - distutils is deprecated

Issue - State: closed - Opened by azazellochg almost 2 years ago

#153 - Installation via Scipion plugin manager fails

Issue - State: closed - Opened by DStrelak almost 2 years ago - 2 comments
Labels: bug

#152 - Update the methods checkLib and addPackage

Pull Request - State: closed - Opened by JorMaister almost 2 years ago - 1 comment

#151 - output more logs during install

Issue - State: open - Opened by azazellochg about 2 years ago - 1 comment

#150 - Fix workflow tutorial intro.

Pull Request - State: closed - Opened by pconesa about 2 years ago - 2 comments

#149 - workflow_tutorial_intro.json depends on ProtCTFFind which isn't available anymore

Issue - State: closed - Opened by akesandgren about 2 years ago - 1 comment
Labels: bug

#148 - * Fixing a Plugin Manager indexError when clicking the plugin tree

Pull Request - State: closed - Opened by fonsecareyna82 about 2 years ago - 1 comment

#147 - release 3.0.12

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#146 - Master to devel

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#145 - fix bug introduced when void is used

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#144 - #142 broke installation for void.tgz

Issue - State: closed - Opened by azazellochg about 2 years ago - 1 comment
Labels: bug

#143 - turn log.info line into debug

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#142 - Allow tars

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#141 - Install method updated

Pull Request - State: closed - Opened by JorMaister about 2 years ago - 1 comment

#140 - Config refactored. Backup now in all cases.

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#139 - GUI does not scale properly on 4K screen

Issue - State: open - Opened by DStrelak about 2 years ago - 10 comments

#138 - Release devel 3.0.11

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#137 - Fix overwrite when there are % (double them)

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#136 - Massive update all

Issue - State: open - Opened by pconesa about 2 years ago - 3 comments

#135 - New modes

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment

#134 - defining default viewers for tomography

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment

#133 - pep8 and minor fixes

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 1 comment

#131 - update outdated requirement

Pull Request - State: closed - Opened by azazellochg over 2 years ago - 1 comment

#130 - tar.py and upgrade_release.py removed

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment

#129 - NameError: name 'logging' is not defined

Pull Request - State: closed - Opened by rmarabini over 2 years ago - 1 comment

#128 - Use env vars if exist

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment

#127 - Calls defineVariable method of the plugin right after is installed.

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment

#126 - do not use protocols.template as a default template. Only when runnin…

Pull Request - State: closed - Opened by pconesa almost 3 years ago - 7 comments

#125 - release devel 3.0.10

Pull Request - State: closed - Opened by pconesa almost 3 years ago - 1 comment

#124 - Fixes templates functionality:

Pull Request - State: closed - Opened by pconesa almost 3 years ago - 1 comment

#123 - Import from template

Pull Request - State: closed - Opened by fonsecareyna82 almost 3 years ago - 1 comment

#122 - * Priority package list

Pull Request - State: closed - Opened by fonsecareyna82 almost 3 years ago - 1 comment

#121 - release devel

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#120 - Logging adaptation

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#119 - release latest changes

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#118 - Update CHANGES.txt

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#117 - * Disabling plugin manager tree when running operations

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago - 1 comment

#116 - Direct call to plugin manager

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#115 - Protocols template just with sections

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#114 - Launch testdata (pw_sync_data.py) in the same process. Useful for deb…

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#113 - * Create a CHANGES.txt file

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago - 1 comment

#112 - Skip binaries when installing uninstalling plugins

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#111 - plugin manager: no binaries

Issue - State: closed - Opened by azazellochg over 3 years ago - 3 comments
Labels: enhancement

#110 - Dhg issues

Pull Request - State: closed - Opened by DaniDelHoyo over 3 years ago - 3 comments

#109 - NoneType object is not iterable

Issue - State: closed - Opened by DStrelak over 3 years ago

#108 - remove dataset initialization done now inside, pwem plugin.defineVari…

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#107 - * Finding datasets

Pull Request - State: closed - Opened by fonsecareyna82 over 3 years ago - 1 comment

#106 - Unable to install deep learning Toolkit

Issue - State: closed - Opened by fonsecareyna82 over 3 years ago

#105 - send master to devel to reset ahead

Pull Request - State: closed - Opened by pconesa over 3 years ago - 1 comment

#104 - rename plugin manager log files

Issue - State: closed - Opened by azazellochg almost 4 years ago

#103 - * Changing the logs suffix

Pull Request - State: closed - Opened by fonsecareyna82 almost 4 years ago - 2 comments

#102 - Hide plugin manager from import

Pull Request - State: closed - Opened by fonsecareyna82 almost 4 years ago - 1 comment

#101 - Hide plugin manager from import

Pull Request - State: closed - Opened by pconesa almost 4 years ago - 1 comment

#100 - Show config param

Pull Request - State: closed - Opened by pconesa almost 4 years ago - 1 comment

#99 - Plugin manager: stop button

Issue - State: open - Opened by pconesa almost 4 years ago
Labels: enhancement

#98 - Plugin Manager perform

Pull Request - State: closed - Opened by fonsecareyna82 almost 4 years ago - 1 comment

#97 - Uses new method tha cleans project name from spaces

Pull Request - State: closed - Opened by pconesa almost 4 years ago - 2 comments

GitHub / scipion-em/scipion-app issues and pull requests