scilus/scilpy issues and pull requests

#620 - Doubled code

Issue - State: open - Opened by EmmaRenauld almost 2 years ago - 3 comments

#619 - [BF] Update bundle metrics - handle NaN

Pull Request - State: closed - Opened by arnaudbore almost 2 years ago - 3 comments

#618 - scil_compute_bundle_voxel_label_map can output tractogram with 1 point streamline

Issue - State: closed - Opened by arnaudbore about 2 years ago - 2 comments

#617 - Bump joblib from 1.1.0 to 1.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 6 comments
Labels: dependencies

#616 - Add a function to verify compatibility

Pull Request - State: closed - Opened by arnaudbore about 2 years ago - 9 comments

#610 - [WIP] update numpy - bot

Pull Request - State: closed - Opened by arnaudbore about 2 years ago - 5 comments

#609 - Update prepare eddy

Pull Request - State: closed - Opened by arnaudbore about 2 years ago

#606 - Script swap_gradient_axis.py left an axis to 0

Issue - State: closed - Opened by gabe1496 about 2 years ago

#605 - Reorg of tractogram filtering functions

Issue - State: open - Opened by grahamlittlephd about 2 years ago - 4 comments

#602 - scil_search_keywords does not work anymore

Issue - State: closed - Opened by arnaudbore about 2 years ago - 2 comments

#596 - scil_apply_transform_to_image.py doesn't change bvecs

Issue - State: closed - Opened by karanphil about 2 years ago - 3 comments

#591 - [ENH] Validate bids

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 15 comments

#583 - Enhance scil_compute_local_tracking_gpu.py

Issue - State: closed - Opened by CHrlS98 over 2 years ago - 1 comment

#579 - --binary not read by Mi-Brain

Issue - State: closed - Opened by EmmaRenauld over 2 years ago - 1 comment

#575 - Change link to recent model in RBx

Pull Request - State: closed - Opened by frheault over 2 years ago - 4 comments

#574 - Improve DOC on scil_resample_tractogram.py

Pull Request - State: closed - Opened by frheault over 2 years ago - 2 comments

#572 - Fix fix dsi studio

Pull Request - State: closed - Opened by frheault over 2 years ago - 3 comments

#566 - New assign color options

Pull Request - State: closed - Opened by frheault over 2 years ago - 23 comments

#558 - [BF] Prepare Eddy - Index creation

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 1 comment

#554 - WIP: New labels maps and simplification of tractometry profile scripts

Pull Request - State: closed - Opened by frheault over 2 years ago - 16 comments

#553 - Fix bundle_adjacency docstring (voxel)

Pull Request - State: closed - Opened by frheault over 2 years ago - 1 comment

#550 - change api to download gdrive

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 2 comments

#549 - remove mmap option

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 5 comments

#548 - fix_left_out_voxel in apply_bias_field_on_dwi

Pull Request - State: closed - Opened by frheault over 2 years ago

#547 - fix_transform_warp_dtype

Pull Request - State: closed - Opened by frheault over 2 years ago - 2 comments

#542 - Adding a cut streamlines tools

Pull Request - State: closed - Opened by frheault over 2 years ago - 5 comments

#541 - compute_connectivity fix average

Pull Request - State: closed - Opened by frheault over 2 years ago - 1 comment

#539 - BF: visualise bundles mosaic when no streamlines

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 3 comments

#535 - BF: save trk when no keep invalid

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 1 comment

#529 - Optional uniformize

Pull Request - State: closed - Opened by frheault almost 3 years ago - 1 comment

#528 - [WIP] Correlate dwi QC

Pull Request - State: closed - Opened by frheault almost 3 years ago - 11 comments

#523 - BF: apply transfo tractogram when no streamlines

Pull Request - State: closed - Opened by arnaudbore almost 3 years ago - 5 comments

#514 - [WIP] Test revert Pillow requirements

Pull Request - State: closed - Opened by arnaudbore almost 3 years ago - 3 comments

#513 - update doc registration

Pull Request - State: closed - Opened by arnaudbore almost 3 years ago - 2 comments

#510 - Fix security issue Pillow

Pull Request - State: closed - Opened by arnaudbore almost 3 years ago - 2 comments

#507 - [WIP] Asymmetric tracking using bitbucket tracking modules

Pull Request - State: closed - Opened by CHrlS98 almost 3 years ago - 6 comments

#501 - Add inverse operation flag

Pull Request - State: closed - Opened by frheault about 3 years ago - 3 comments

#500 - Support empty bundle in tractometry

Pull Request - State: closed - Opened by frheault about 3 years ago - 1 comment

#499 - Estimate bundle diameter

Pull Request - State: closed - Opened by frheault about 3 years ago - 13 comments

#498 - Fix: Wrong weights in COMMIT

Pull Request - State: closed - Opened by frheault about 3 years ago - 1 comment

#494 - Add a soft distance to facilitate manipulation

Pull Request - State: closed - Opened by frheault about 3 years ago - 2 comments

#491 - Remove rd from empty return

Pull Request - State: closed - Opened by frheault about 3 years ago - 1 comment

#487 - Add options to merge groups of labels

Pull Request - State: closed - Opened by frheault about 3 years ago - 7 comments

#484 - Swap x/y

Pull Request - State: closed - Opened by frheault about 3 years ago - 1 comment

#481 - extra parameters for small bundles or animal data (RB+SLR)

Pull Request - State: closed - Opened by frheault about 3 years ago - 2 comments