Ecosyste.ms: Issues
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GitHub / scilus/scilpy issues and pull requests
#915 - ToDo: scil_dwi_detect_volume_outliers improvement
Issue -
State: open - Opened by EmmaRenauld 12 months ago
- 1 comment
Labels: Hackathon - Junior
#914 - Check typo automatically
Issue -
State: closed - Opened by arnaudbore 12 months ago
#913 - New script: Compute endpoints density map
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 1 comment
#912 - Fixing search keywords
Pull Request -
State: closed - Opened by karanphil 12 months ago
- 1 comment
#911 - Refactor project_streamlines_to_map
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 2 comments
#910 - Speedup testing
Issue -
State: open - Opened by arnaudbore 12 months ago
Labels: Hackathon-Senior
#909 - Ability to resume workflow when codecov push fails
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
- 1 comment
#908 - Cleaning reconst scripts part1
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 3 comments
#907 - Fix coverage report paths
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
- 1 comment
#906 - DO NOT MERGE, TEST FOR MASTER'S FIX
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
- 1 comment
#905 - Fix and uniformize verbose
Pull Request -
State: closed - Opened by karanphil 12 months ago
- 1 comment
#904 - Finish cleaning the main of dwi_ scripts, to allow eventual unit tests
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 1 comment
#903 - Add gradient_utils unit tests
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 2 comments
#902 - Fix coverage sources
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
- 2 comments
#901 - Add GPU support for PFT tracking
Issue -
State: open - Opened by CHrlS98 12 months ago
- 4 comments
#900 - [WIP] Fix and uniformize verbose
Pull Request -
State: closed - Opened by karanphil 12 months ago
#899 - disable test run on forks
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
#898 - Fix weighted mean std when infinite values
Pull Request -
State: closed - Opened by arnaudbore 12 months ago
- 1 comment
#897 - run workflow on PR head
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
#896 - Adding msmt support to set_frf_diffusivities
Pull Request -
State: closed - Opened by karanphil 12 months ago
- 2 comments
#895 - pass fetcher to DVC
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
- 2 comments
#894 - FIX: scil_visualize_connectivity text rotation
Pull Request -
State: closed - Opened by AntoineTheb 12 months ago
- 1 comment
Labels: bug
#893 - Cancel previous concurrent build
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
#892 - [WIP] Kill Jenkins
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
- 1 comment
#891 - SFT's hidden `_data` should never be used.
Issue -
State: open - Opened by EmmaRenauld about 1 year ago
- 2 comments
Labels: Hackathon-Senior
#890 - Robustify the coloring
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
#889 - Fix documentation
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 3 comments
#888 - Fix bad commit in codecov
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
- 6 comments
#887 - Add Otsu threshold to scil_volume_math.py
Pull Request -
State: closed - Opened by CHrlS98 about 1 year ago
- 3 comments
#886 - add step to publish coverage to codecov.io
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
- 3 comments
#885 - Unit tests: gradients.bvec_bval_tools
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 4 comments
#884 - Division by 0
Issue -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
Labels: Hackathon-Senior
#883 - Bump pillow from 10.0.1 to 10.2.0 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#882 - Bump pillow from 10.0.1 to 10.2.0
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#881 - Fix the script for unequal bval
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 1 comment
#880 - Bind DVC data registry
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
- 6 comments
#879 - Default logging level
Issue -
State: closed - Opened by EmmaRenauld about 1 year ago
- 5 comments
#878 - rename some scripts
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 3 comments
#876 - [BF] tractoflow filter by roi
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 2 comments
#875 - [ENH] Add pull request template
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 2 comments
#874 - TODO Jan 2024
Issue -
State: closed - Opened by arnaudbore about 1 year ago
- 1 comment
#873 - Fix basename compute dwi snr
Pull Request -
State: closed - Opened by Manonedde about 1 year ago
- 2 comments
#872 - Add perpendicular diffusivity in NODDI priors
Pull Request -
State: closed - Opened by gagnonanthony about 1 year ago
- 3 comments
#871 - Fix_basename_dwi_compute_snr
Pull Request -
State: closed - Opened by Manonedde about 1 year ago
- 4 comments
#870 - MT/ihMT scripts: cleanup and adding B1+ correction
Pull Request -
State: closed - Opened by karanphil about 1 year ago
- 14 comments
#869 - [ENH] Add coverage
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 3 comments
#868 - [WIP] Add_version_scilpy
Pull Request -
State: closed - Opened by ThoumyreStanislas about 1 year ago
- 4 comments
#867 - Clarify b0 threshold
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 18 comments
#866 - ToDo, manage differently b0_threshold and tolerance.
Issue -
State: closed - Opened by EmmaRenauld about 1 year ago
#865 - Warning for descoteaux basis
Issue -
State: closed - Opened by EmmaRenauld about 1 year ago
- 2 comments
#864 - Update doc surface
Pull Request -
State: closed - Opened by grahamlittlephd about 1 year ago
- 4 comments
#863 - Rename "lobe-specific metrics" to "Bingham metrics"
Pull Request -
State: closed - Opened by CHrlS98 about 1 year ago
- 2 comments
#862 - fix Max issues
Pull Request -
State: closed - Opened by Manonedde about 1 year ago
- 1 comment
#861 - DOC - tracking
Pull Request -
State: closed - Opened by gabknight about 1 year ago
- 1 comment
#860 - Update help prompts to fit new name + add formerly: line for old script name.
Pull Request -
State: closed - Opened by gagnonanthony about 1 year ago
- 8 comments
#859 - scil_dwi_extract_b0 -f
Issue -
State: closed - Opened by mdesco about 1 year ago
#858 - scil_dwi_compute_snr
Issue -
State: closed - Opened by mdesco about 1 year ago
#857 - Improved docstring and renaming
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 7 comments
Labels: restructuration
#856 - RF - Scripts Renaming
Pull Request -
State: closed - Opened by gabknight about 1 year ago
- 3 comments
#855 - Merge asymmetric filtering scripts
Pull Request -
State: closed - Opened by CHrlS98 about 1 year ago
- 6 comments
#854 - ENH: merge gradients convert
Pull Request -
State: closed - Opened by AntoineTheb about 1 year ago
- 6 comments
Labels: restructuration
#853 - Update to dipy 1.8
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 10 comments
#852 - Rename small utils
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 4 comments
Labels: restructuration
#851 - Add throttling to jenkins pipeline
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
- 1 comment
Labels: restructuration
#850 - [WIP] Add_verbose_arg
Pull Request -
State: closed - Opened by ThoumyreStanislas about 1 year ago
- 4 comments
Labels: restructuration
#849 - fix_surface_renaming
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 1 comment
Labels: restructuration
#848 - TST - remove legacy warnings
Pull Request -
State: closed - Opened by gabknight about 1 year ago
- 2 comments
Labels: restructuration
#847 - Rename denoising
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
Labels: restructuration
#846 - Rename some tractogram scripts
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 6 comments
Labels: restructuration
#845 - Rename scripts
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 4 comments
Labels: restructuration
#844 - Add multiple fs folder subject possibility
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 5 comments
Labels: restructuration
#843 - Tractometry_flow fails if not enough streamlines
Issue -
State: open - Opened by arnaudbore about 1 year ago
- 1 comment
Labels: Hackathon-Senior
#842 - Rename tractometry
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 4 comments
#841 - Rename tractometry files (i.e. bundle files)
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
#840 - [WIP] Refactor scil_tractogram_project_streamlines_to_map.
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 3 comments
#839 - Adding tolerance argument to fodf msmt
Pull Request -
State: closed - Opened by karanphil about 1 year ago
- 5 comments
#838 - General testing for all legacy scripts
Pull Request -
State: closed - Opened by gabknight about 1 year ago
- 10 comments
Labels: restructuration
#837 - RF - Tractogram Scripts Renaming
Pull Request -
State: closed - Opened by gabknight about 1 year ago
- 4 comments
#836 - Moving OP out of the default output files from scil_btensor_metrics.py.
Pull Request -
State: closed - Opened by karanphil about 1 year ago
- 5 comments
#835 - Rename reorder_dwi
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 5 comments
Labels: restructuration
#834 - Rename gradients scripts
Pull Request -
State: closed - Opened by karanphil about 1 year ago
- 5 comments
Labels: restructuration
#833 - Add legacy test (help)
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 4 comments
#832 - FIX import new main
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
Labels: bug, urgent
#831 - compute_divide with --fa option
Issue -
State: closed - Opened by mdesco about 1 year ago
#830 - MSMT_frf and fODF inconsistency with --tolerance on b-values
Issue -
State: closed - Opened by mdesco about 1 year ago
#829 - Rename volume scripts
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 7 comments
#828 - Rename convert scripts
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 10 comments
Labels: restructuration
#827 - Rename surface scripts
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 8 comments
Labels: restructuration
#826 - Speedup outlier removal
Issue -
State: open - Opened by arnaudbore about 1 year ago
Labels: Hackathon-Senior
#825 - [Fix] Change wrong help description
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
#824 - Legacy installation
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 3 comments
#823 - Rename dwi scripts
Pull Request -
State: closed - Opened by karanphil about 1 year ago
- 3 comments
#822 - Rename reconst scripts
Pull Request -
State: closed - Opened by karanphil about 1 year ago
- 13 comments
Labels: restructuration
#821 - [FIX] Use numbers rather than letters in scil_gradients_modify_axes
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 2 comments
#820 - Rename connectomics and deprecate old
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 5 comments
Labels: restructuration
#819 - Rename labels scripts and deprecate old
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
Labels: restructuration
#818 - New upsampling method (PTT) for tractogram
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 19 comments
Labels: enhancement
#817 - FIX: scil_cut_streamlines now properly handles loops
Pull Request -
State: closed - Opened by AntoineTheb about 1 year ago
- 7 comments
Labels: bug
#816 - --final_order not clear in new scil_gradients_modify_axes.py
Issue -
State: closed - Opened by mdesco about 1 year ago
- 2 comments
#815 - RF - Tracking/Tractogram Scripts
Pull Request -
State: closed - Opened by gabknight about 1 year ago
- 7 comments
Labels: restructuration