Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / scilus/scilpy issues and pull requests
#826 - Speedup outlier removal
Issue -
State: open - Opened by arnaudbore 10 months ago
#825 - [Fix] Change wrong help description
Pull Request -
State: closed - Opened by EmmaRenauld 10 months ago
- 1 comment
#824 - Legacy installation
Pull Request -
State: closed - Opened by arnaudbore 10 months ago
- 3 comments
#823 - Rename dwi scripts
Pull Request -
State: closed - Opened by karanphil 10 months ago
- 3 comments
#822 - Rename reconst scripts
Pull Request -
State: closed - Opened by karanphil 10 months ago
- 13 comments
Labels: restructuration
#821 - [FIX] Use numbers rather than letters in scil_gradients_modify_axes
Pull Request -
State: closed - Opened by EmmaRenauld 10 months ago
- 2 comments
#820 - Rename connectomics and deprecate old
Pull Request -
State: closed - Opened by EmmaRenauld 10 months ago
- 5 comments
Labels: restructuration
#819 - Rename labels scripts and deprecate old
Pull Request -
State: closed - Opened by EmmaRenauld 10 months ago
- 1 comment
Labels: restructuration
#818 - New upsampling method (PTT) for tractogram
Pull Request -
State: closed - Opened by frheault 10 months ago
- 19 comments
Labels: enhancement
#817 - FIX: scil_cut_streamlines now properly handles loops
Pull Request -
State: closed - Opened by AntoineTheb 10 months ago
- 7 comments
Labels: bug
#816 - --final_order not clear in new scil_gradients_modify_axes.py
Issue -
State: closed - Opened by mdesco 10 months ago
- 2 comments
#815 - RF - Tracking/Tractogram Scripts
Pull Request -
State: closed - Opened by gabknight 10 months ago
- 7 comments
Labels: restructuration
#814 - Fixing scil_visualize_bundles_mosaic.py with Pillow 10.0.*
Pull Request -
State: closed - Opened by karanphil 10 months ago
- 2 comments
#813 - ENH: refactor scil_compute_local_tracking
Pull Request -
State: closed - Opened by AntoineTheb 10 months ago
- 5 comments
Labels: restructuration
#812 - BF - metadata version when using editable install
Pull Request -
State: closed - Opened by gabknight 11 months ago
- 8 comments
#811 - Fix round_bvals_to_shell
Pull Request -
State: closed - Opened by karanphil 11 months ago
- 4 comments
#810 - Scripts to project 3D and 4D maps to streamline points and perform math operations in space of streamline points
Pull Request -
State: closed - Opened by grahamlittlephd 11 months ago
- 33 comments
Labels: WIP
#809 - [ENH] Add not legacy when install scilpy
Issue -
State: closed - Opened by arnaudbore 11 months ago
- 1 comment
#808 - [WIP] Add_noddi_ecvf
Pull Request -
State: closed - Opened by Manonedde 11 months ago
- 4 comments
Labels: WIP
#807 - Simple framework to port scripts into legacy
Pull Request -
State: closed - Opened by AlexVCaron 11 months ago
- 19 comments
#806 - Cleaning reconst module
Pull Request -
State: closed - Opened by karanphil 11 months ago
- 7 comments
Labels: restructuration
#805 - Bug in `uncompress` from `scilpy/tractograms/uncompress.pyx`
Issue -
State: open - Opened by AntoineTheb 11 months ago
Labels: bug
#804 - [WIP] - Hyperplane voxel labels
Pull Request -
State: closed - Opened by frheault 11 months ago
- 4 comments
Labels: WIP
#803 - scil_merge_json move function into module
Pull Request -
State: closed - Opened by arnaudbore 11 months ago
- 5 comments
Labels: restructuration
#802 - Final check main of script 1) dwi 2) gradient
Pull Request -
State: closed - Opened by EmmaRenauld 11 months ago
- 16 comments
Labels: restructuration
#801 - scil_convert_fdf.py
Pull Request -
State: closed - Opened by arnaudbore 11 months ago
- 1 comment
Labels: restructuration
#800 - Fix flip startrack
Pull Request -
State: closed - Opened by arnaudbore 11 months ago
- 1 comment
#799 - Move bvec_bval_tool from utils to gradients module
Pull Request -
State: closed - Opened by EmmaRenauld 11 months ago
- 3 comments
Labels: restructuration
#798 - FIX: bug in scil_score_bundles.py
Pull Request -
State: closed - Opened by AntoineTheb 11 months ago
- 1 comment
Labels: bug
#797 - [ENH] Add fix trk startrack
Pull Request -
State: closed - Opened by arnaudbore 11 months ago
- 2 comments
#796 - [BF] fix trk space when filter by length
Pull Request -
State: closed - Opened by arnaudbore 11 months ago
- 1 comment
#795 - adding vtk legacy options to scil_convert_surface script
Pull Request -
State: closed - Opened by ThoumyreStanislas 11 months ago
- 11 comments
Labels: WIP
#794 - Manage test data aside of git commits
Issue -
State: closed - Opened by AlexVCaron 11 months ago
- 1 comment
#793 - Volume discrepancy between scilpy and tractometry_flow scripts
Issue -
State: open - Opened by cbedetti 11 months ago
- 1 comment
#792 - Add pre-commit hooks to cleanup code
Issue -
State: open - Opened by AlexVCaron 11 months ago
#791 - Update memsmt fodf script [requires dipy 1.8.0]
Pull Request -
State: closed - Opened by karanphil 11 months ago
- 9 comments
Labels: WIP
#790 - Gradient sampling refactor, part2
Pull Request -
State: closed - Opened by EmmaRenauld 11 months ago
- 10 comments
Labels: restructuration
#789 - Add data to unit test tractograms/streamlines
Issue -
State: open - Opened by arnaudbore 12 months ago
#788 - fodf cleanup, deleted obselete and more
Pull Request -
State: closed - Opened by mdesco 12 months ago
Labels: restructuration
#787 - Move valid inputs from reorder_philips into module gradients
Pull Request -
State: closed - Opened by arnaudbore 12 months ago
- 5 comments
Labels: restructuration
#786 - Modify mti
Pull Request -
State: closed - Opened by Manonedde 12 months ago
- 1 comment
Labels: restructuration
#785 - Moving functions to b_tensor_utils.py
Pull Request -
State: closed - Opened by karanphil 12 months ago
- 3 comments
Labels: restructuration
#784 - Refactor local tracking script after dipy 1.8.0
Issue -
State: closed - Opened by gabknight 12 months ago
#783 - Adding volume operations tests
Pull Request -
State: closed - Opened by gagnonanthony 12 months ago
- 7 comments
Labels: restructuration
#782 - OPT - map sh to sf before tracking [requires dipy 1.8.0]
Pull Request -
State: closed - Opened by gabknight 12 months ago
- 14 comments
#781 - DWI module
Pull Request -
State: closed - Opened by mdesco 12 months ago
- 2 comments
Labels: restructuration
#780 - Fix Cythonization warnings
Issue -
State: open - Opened by AlexVCaron 12 months ago
- 1 comment
#779 - Module Gradient
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 1 comment
Labels: restructuration
#778 - Add test volume_math
Pull Request -
State: closed - Opened by frheault 12 months ago
- 3 comments
Labels: restructuration
#777 - Test volume math (to_close)
Pull Request -
State: closed - Opened by frheault 12 months ago
- 1 comment
#776 - Asym clean up
Pull Request -
State: closed - Opened by mdesco 12 months ago
- 5 comments
#775 - Move load img
Pull Request -
State: closed - Opened by karanphil 12 months ago
#774 - FIX/ENH: Streamline (and mask) operations refactor
Pull Request -
State: closed - Opened by AntoineTheb 12 months ago
- 30 comments
Labels: bug, enhancement, restructuration
#773 - Dti clean up
Pull Request -
State: closed - Opened by mdesco 12 months ago
- 4 comments
#772 - Removing frf_table option
Pull Request -
State: closed - Opened by karanphil 12 months ago
#771 - Create a assert_roi_radii_format function for FRF scripts
Pull Request -
State: closed - Opened by karanphil 12 months ago
- 1 comment
#770 - Noddi clean up
Pull Request -
State: closed - Opened by mdesco 12 months ago
- 2 comments
#769 - RF - changed tracking default sphere from symmetric724 to repulsion724
Pull Request -
State: closed - Opened by gabknight 12 months ago
- 6 comments
#768 - add mti.py in reconst
Pull Request -
State: closed - Opened by Manonedde 12 months ago
- 5 comments
#767 - Compare tractograms (TODI, TDI, ACC)
Pull Request -
State: closed - Opened by frheault 12 months ago
- 13 comments
Labels: enhancement, WIP
#766 - Refactor visualization module
Pull Request -
State: closed - Opened by AlexVCaron 12 months ago
- 29 comments
Labels: restructuration
#765 - [WIP] SATA (bundle saturation) QC scripts
Pull Request -
State: closed - Opened by frheault 12 months ago
- 12 comments
Labels: enhancement, WIP
#764 - Connectomics module
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 8 comments
#763 - Script to convert datatype
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 3 comments
#762 - Streamline operations tests
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 1 comment
#761 - Support multiple input to merge (for PR in connectoflow)
Pull Request -
State: closed - Opened by frheault 12 months ago
- 3 comments
#760 - [ENH] Add scilpy version in help
Issue -
State: open - Opened by arnaudbore 12 months ago
#759 - Update version and README
Pull Request -
State: closed - Opened by arnaudbore 12 months ago
- 3 comments
#758 - ToDo: change BoundingBox management in scil_crop_volume.
Issue -
State: open - Opened by EmmaRenauld 12 months ago
- 4 comments
#757 - ENH: Adding option to skip randomization of seed. + other fixes
Pull Request -
State: closed - Opened by EmmaRenauld 12 months ago
- 9 comments
#756 - Bump pillow from 9.0.1 to 10.0.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 1 year ago
- 1 comment
Labels: dependencies
#755 - Bump pillow from 9.0.1 to 10.0.1 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] almost 1 year ago
- 1 comment
Labels: dependencies
#754 - Dummy PR for tests
Pull Request -
State: closed - Opened by AntoineTheb almost 1 year ago
#753 - Fix interp surf rendering
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 1 comment
#752 - ENH: `scil_tractogram_math` support for TCKs
Pull Request -
State: closed - Opened by AntoineTheb about 1 year ago
- 10 comments
Labels: bug
#751 - [WIP] Test new hot_dipy 1.6.1rc1 against 1.5.0
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
#750 - ENH: Add Parallel Transport Tractography to `scil_compute_local_tracking`
Pull Request -
State: closed - Opened by AntoineTheb about 1 year ago
- 20 comments
Labels: enhancement
#749 - Use hot dipy 1.8.0.dev0
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 10 comments
#748 - Fix a few warnings
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
#747 - Volumes modules
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 8 comments
#746 - Custom ROI surface rendering for Laurent
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 5 comments
#745 - Missing documentation for scilpy.tractanalysis.grid_intersections
Issue -
State: open - Opened by CHrlS98 about 1 year ago
- 1 comment
#744 - Remove pairwise
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 2 comments
#743 - Merge gpu tracking into scil_compute_local_tracking.py
Pull Request -
State: closed - Opened by CHrlS98 about 1 year ago
- 16 comments
#742 - scil_label_and_distance_maps.py missing script?
Issue -
State: open - Opened by yizhwan about 1 year ago
#741 - Error installing spams package from the scilpy requirements
Issue -
State: closed - Opened by jayashree15 about 1 year ago
- 3 comments
#740 - Add rejected streamlines to scil_filter_tractogram_anatomically
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 7 comments
#739 - Fix undetected bug after modifying module tractogram.
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 1 comment
#738 - Update citation for RBx -> BundleSeg
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 1 comment
#737 - Fix bug with new .gitattributes
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
- 1 comment
#736 - Module streamline operations
Pull Request -
State: closed - Opened by EmmaRenauld about 1 year ago
- 7 comments
#735 - Fix filter anatomically
Pull Request -
State: closed - Opened by arnaudbore about 1 year ago
- 2 comments
#734 - Working synb0 wrapper in scilpy
Pull Request -
State: closed - Opened by frheault about 1 year ago
- 23 comments
Labels: enhancement
#733 - Working Scilpy development container for VS Code
Pull Request -
State: closed - Opened by AlexVCaron about 1 year ago
- 7 comments
#732 - Correct ihMTsat
Pull Request -
State: closed - Opened by karanphil about 1 year ago
- 3 comments
#731 - Sphere subdivide
Pull Request -
State: closed - Opened by EliseCos about 1 year ago
- 7 comments
#730 - Harmonisation GPU vs CPU local tracking parameters
Issue -
State: closed - Opened by arnaudbore about 1 year ago
- 2 comments
#729 - BUG: Allow tractogram math script to run as such
Pull Request -
State: closed - Opened by jhlegarreta over 1 year ago
- 7 comments
#728 - Multi centro labels map
Pull Request -
State: closed - Opened by frheault over 1 year ago
- 1 comment
#727 - Upgrade filter overwrite distance - Add criteria
Pull Request -
State: closed - Opened by arnaudbore over 1 year ago
- 1 comment