Ecosyste.ms: Issues
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GitHub / scilus/scilpy issues and pull requests
#1134 - [FAKE PR] Do not ignore legacy
Pull Request -
State: open - Opened by EmmaRenauld 10 days ago
- 1 comment
#1133 - Add test for volume_metrics
Pull Request -
State: open - Opened by EmmaRenauld 10 days ago
- 1 comment
#1132 - Working test of SFS in Python3.12
Pull Request -
State: open - Opened by frheault 11 days ago
- 1 comment
#1131 - Installation guidelines improvements
Issue -
State: open - Opened by mdesco 12 days ago
#1130 - fix colorbar with nb_value
Pull Request -
State: open - Opened by Thierry56511 15 days ago
- 1 comment
#1129 - dwi_prepare_eddy_command options
Issue -
State: closed - Opened by EliseCos 15 days ago
- 1 comment
#1128 - Problem running some scripts with new release
Issue -
State: open - Opened by mdesco 16 days ago
#1127 - No test file for new script
Issue -
State: open - Opened by EmmaRenauld 17 days ago
#1126 - Small fix (issue 1123)
Pull Request -
State: closed - Opened by EmmaRenauld 17 days ago
- 1 comment
#1125 - Support .tck for commit
Pull Request -
State: closed - Opened by EmmaRenauld 17 days ago
- 2 comments
#1124 - scil_tractogram_commit needs a --reference to work with .tck input
Issue -
State: closed - Opened by mdesco 17 days ago
- 1 comment
#1123 - scil_tractogram_segment_connections_from_labels.py bug with --out_dir
Issue -
State: closed - Opened by mdesco 18 days ago
- 2 comments
#1122 - Better print info? Error in affine? (Not the same as mrinfo!)
Issue -
State: open - Opened by EmmaRenauld 18 days ago
#1121 - bids_validate func get_data -> changed clean: Boolean definition from…
Pull Request -
State: open - Opened by Desk3505 22 days ago
- 1 comment
#1120 - update scilpy: remove old stuff now in dipy
Issue -
State: open - Opened by arnaudbore 22 days ago
- 1 comment
#1119 - [ENH] Add an option to cut streamlines
Pull Request -
State: open - Opened by arnaudbore 23 days ago
- 3 comments
#1118 - [ENH] Add positionnal arguments
Pull Request -
State: closed - Opened by arnaudbore 24 days ago
- 2 comments
#1117 - [ENH] Allow extra option for topup and eddy
Pull Request -
State: closed - Opened by arnaudbore 25 days ago
- 1 comment
#1116 - Adjust script for new assert_inputs_exist feature (list of lists of paths)
Issue -
State: open - Opened by karanphil 29 days ago
#1115 - [BF] NODDI map catch error
Pull Request -
State: closed - Opened by arnaudbore 30 days ago
- 2 comments
#1114 - update to dipy 1.10
Pull Request -
State: closed - Opened by arnaudbore about 2 months ago
- 1 comment
#1113 - Fixing the skip_b0_check function
Pull Request -
State: closed - Opened by karanphil about 2 months ago
- 1 comment
#1112 - Fibertube Density
Pull Request -
State: closed - Opened by VincentBeaud about 2 months ago
- 3 comments
#1111 - [New feature] Topup configuration selection
Issue -
State: open - Opened by AlexVCaron about 2 months ago
Labels: enhancement
#1110 - Add script to validate gradient tables
Pull Request -
State: closed - Opened by karanphil about 2 months ago
- 1 comment
#1109 - Fix merge queue
Pull Request -
State: closed - Opened by AlexVCaron about 2 months ago
- 1 comment
#1108 - Argument skip_b0_check always overwrites with minimum
Issue -
State: closed - Opened by karanphil about 2 months ago
- 2 comments
#1107 - DOC - fixed updated script name
Pull Request -
State: closed - Opened by gabknight about 2 months ago
- 1 comment
#1106 - Add Scilpy version - part 2
Pull Request -
State: closed - Opened by zinelya about 2 months ago
- 2 comments
#1105 - ENH: remove `sft._data` usage part 1 - tractogram coloring scripts + more
Pull Request -
State: open - Opened by AntoineTheb about 2 months ago
- 4 comments
#1104 - Using fixtures in tests
Issue -
State: open - Opened by levje about 2 months ago
#1103 - DOC - renamed the uncompress fct to streamlines_to_voxel_coordinates
Pull Request -
State: open - Opened by gabknight about 2 months ago
- 3 comments
#1102 - [WIP] Unit tests connectivity
Pull Request -
State: open - Opened by EmmaRenauld about 2 months ago
- 1 comment
#1101 - Cythonization warnings
Pull Request -
State: closed - Opened by CHrlS98 about 2 months ago
- 2 comments
#1100 - Add Scilpy version - part 1
Pull Request -
State: closed - Opened by zinelya about 2 months ago
- 1 comment
#1099 - Final connectivity scripts PR
Pull Request -
State: closed - Opened by EmmaRenauld about 2 months ago
- 2 comments
#1098 - BF - fixed voxel bundary conditions in uncompress streamlines
Pull Request -
State: closed - Opened by gabknight about 2 months ago
- 2 comments
#1097 - Update script scil_viz_gradients_screenshot
Pull Request -
State: closed - Opened by karanphil about 2 months ago
- 2 comments
#1096 - Change Crop Volume BBOX for a json
Pull Request -
State: open - Opened by AlexVCaron about 2 months ago
- 2 comments
#1095 - IO fetcher
Issue -
State: open - Opened by arnaudbore about 2 months ago
Labels: Hackathon-Senior
#1094 - Fixing bug in gradients_generate_sampling
Pull Request -
State: closed - Opened by karanphil about 2 months ago
- 1 comment
#1093 - [WIP] Script validate gradient table
Pull Request -
State: closed - Opened by VincentBeaud about 2 months ago
- 4 comments
#1092 - Fix the hdf5 error when dpp are present
Pull Request -
State: closed - Opened by gagnonanthony about 2 months ago
- 1 comment
#1091 - Update tests - parallele
Pull Request -
State: open - Opened by arnaudbore about 2 months ago
#1090 - FIX: Filter streamlines by length, use the "save rejection" argument.
Pull Request -
State: closed - Opened by levje about 2 months ago
- 1 comment
#1089 - FIX: Division by 0 in `scil_dti_metrics`
Pull Request -
State: closed - Opened by AntoineTheb about 2 months ago
- 2 comments
#1088 - Move plot residuals into viz - plot
Pull Request -
State: closed - Opened by elyz081 about 2 months ago
- 2 comments
#1087 - Cleaning the connectivity pairwise agreement script
Pull Request -
State: closed - Opened by EmmaRenauld about 2 months ago
- 1 comment
#1086 - Adding support for list of lists of paths in assert_inputs_exist
Pull Request -
State: closed - Opened by karanphil about 2 months ago
- 6 comments
#1085 - Fix Fury upcoming deprecation call
Pull Request -
State: closed - Opened by AlexVCaron about 2 months ago
- 1 comment
#1084 - Condense distance matrix that was not. Pep8 + test pass
Pull Request -
State: closed - Opened by VincentBeaud about 2 months ago
- 4 comments
#1083 - Adding ref to scil_freewater_maps
Pull Request -
State: closed - Opened by karanphil about 2 months ago
#1082 - Switch to loops simple connectivity
Pull Request -
State: closed - Opened by frheault about 2 months ago
- 1 comment
#1081 - Clarify doc to differentiate dpp_math with dps mode and dps_math
Pull Request -
State: closed - Opened by VincentBeaud about 2 months ago
#1080 - Add test single shell NODDI
Pull Request -
State: closed - Opened by karanphil about 2 months ago
- 1 comment
#1079 - [DOC] Add documentation for grid_intersections
Pull Request -
State: closed - Opened by CHrlS98 about 2 months ago
- 5 comments
#1078 - Avoid scalar with dim > 0 by squeezing. Passes test and pep8 no warning.
Pull Request -
State: closed - Opened by VincentBeaud about 2 months ago
- 2 comments
#1077 - BF for asymmetric peaks
Pull Request -
State: closed - Opened by CHrlS98 about 2 months ago
- 2 comments
#1076 - [FIX]: Return rejected streamlines with empty sft
Pull Request -
State: closed - Opened by levje about 2 months ago
- 3 comments
#1075 - New Endpoint Scoring - Charles' suggestions
Pull Request -
State: closed - Opened by VincentBeaud about 2 months ago
- 2 comments
#1074 - Add script to validate a gradient table
Issue -
State: open - Opened by arnaudbore 2 months ago
Labels: Hackathon-Senior
#1073 - Filter streamline by length failure with sft with no streamline
Issue -
State: closed - Opened by levje 2 months ago
Labels: Hackathon-Senior
#1072 - scil_viz_fodf.py can't visulize peaks.
Issue -
State: closed - Opened by gaunny 2 months ago
- 3 comments
#1071 - scil_surface_convert.py only supports FreeSurfer surfaces, update this script to support FSL first subcortical segmentations
Issue -
State: open - Opened by grahamlittlephd 2 months ago
Labels: Hackathon-Senior
#1070 - Add Fibertube_tracking.rst to the read-the-docs
Pull Request -
State: closed - Opened by CHrlS98 2 months ago
- 1 comment
#1069 - Tracking local custom seeds
Pull Request -
State: closed - Opened by VincentBeaud 2 months ago
- 3 comments
#1068 - RF - Input to volume stats scripts
Pull Request -
State: closed - Opened by gabknight 2 months ago
- 5 comments
#1067 - Function assert_inputs_exist does not work with a list of lists
Issue -
State: closed - Opened by karanphil 2 months ago
Labels: Hackathon-Senior
#1066 - Script dps math
Pull Request -
State: closed - Opened by VincentBeaud 2 months ago
- 4 comments
#1065 - ENH: add interpolation to `scil_volume_apply_transform`
Pull Request -
State: closed - Opened by AntoineTheb 2 months ago
- 1 comment
#1064 - Fibertube tracking - New endpoint scoring
Pull Request -
State: closed - Opened by VincentBeaud 2 months ago
- 2 comments
#1063 - Next connectivity scripts
Pull Request -
State: closed - Opened by EmmaRenauld 2 months ago
- 3 comments
#1062 - Numpy deprecation warning
Issue -
State: closed - Opened by EmmaRenauld 2 months ago
- 1 comment
Labels: Hackathon-Senior
#1061 - Invalid help
Issue -
State: open - Opened by EmmaRenauld 2 months ago
- 1 comment
Labels: Hackathon-Senior
#1060 - Todo: Fix scipy warning
Issue -
State: closed - Opened by EmmaRenauld 2 months ago
Labels: Hackathon-Senior
#1059 - [VIS] Fury upcoming deprecated call
Issue -
State: closed - Opened by EmmaRenauld 2 months ago
Labels: Hackathon-Senior
#1058 - toDo: improve loop in my script
Issue -
State: closed - Opened by EmmaRenauld 2 months ago
Labels: Hackathon-Senior
#1056 - Fix doc
Pull Request -
State: closed - Opened by EmmaRenauld 2 months ago
- 1 comment
#1054 - Division by 0
Issue -
State: open - Opened by EmmaRenauld 3 months ago
- 3 comments
Labels: Hackathon-Senior
#1052 - [BF] Tractogram filter by multiples ROIs - Crash
Pull Request -
State: closed - Opened by arnaudbore 3 months ago
- 2 comments
#1049 - New scripts suggestions or new features
Issue -
State: open - Opened by arnaudbore 3 months ago
- 1 comment
Labels: Hackathon-Senior
#1045 - Create new script compute_simple_matrix
Pull Request -
State: closed - Opened by EmmaRenauld 3 months ago
- 2 comments
#1044 - Possible upcoming issue with panda
Issue -
State: closed - Opened by EmmaRenauld 3 months ago
- 1 comment
#1039 - harmonzie labels for longitudinal lesions - WIP
Pull Request -
State: open - Opened by frheault 4 months ago
- 5 comments
#1038 - Add header info when saving into nifti
Issue -
State: open - Opened by arnaudbore 4 months ago
- 1 comment
Labels: Hackathon - Junior
#1035 - BundleSeg exploration viewer for filtering
Pull Request -
State: open - Opened by frheault 4 months ago
- 3 comments
#1034 - Hyperplane update
Pull Request -
State: open - Opened by frheault 4 months ago
- 2 comments
#1029 - freewater estimation
Issue -
State: open - Opened by raywell627 5 months ago
- 1 comment
#1028 - [WIP] Fix tests
Pull Request -
State: open - Opened by arnaudbore 5 months ago
- 1 comment
#1027 - Tractograms: more unit tests
Pull Request -
State: open - Opened by EmmaRenauld 5 months ago
- 1 comment
#1026 - Nawm generation based on distance map
Pull Request -
State: open - Opened by frheault 5 months ago
- 1 comment
#1025 - Error while building scilpy from source
Issue -
State: open - Opened by zhitao-guo 5 months ago
#1024 - Update test data key to 'tractograms.zip' instead of 'atlas.zip'
Pull Request -
State: open - Opened by elyz081 6 months ago
- 3 comments
#1023 - Distance map
Pull Request -
State: closed - Opened by frheault 6 months ago
- 3 comments
#1022 - [ENH] Add mrds scripts part 2
Pull Request -
State: open - Opened by arnaudbore 6 months ago
- 1 comment
#1021 - [ENH] Add mrds scripts part 1
Pull Request -
State: open - Opened by arnaudbore 6 months ago
- 2 comments
#1020 - Modify lesions_info to support labels instead of mask
Pull Request -
State: closed - Opened by frheault 6 months ago
- 1 comment
#1019 - ENH: Pad or crop volume using `scil_volume_reshape.py`
Pull Request -
State: open - Opened by AntoineTheb 6 months ago
- 4 comments
Labels: enhancement
#1018 - Removing unused argument in scil_bundle_fixel_analysis.py
Pull Request -
State: closed - Opened by karanphil 6 months ago
- 1 comment
#1017 - WIP: fODF interpolation (help needed)
Pull Request -
State: open - Opened by AntoineTheb 7 months ago
- 5 comments
Labels: bug, enhancement