Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / scilus/scilpy issues and pull requests
#1028 - [WIP] Fix tests
Pull Request -
State: open - Opened by arnaudbore 23 days ago
- 1 comment
#1027 - Tractograms: more unit tests
Pull Request -
State: open - Opened by EmmaRenauld 28 days ago
- 1 comment
#1026 - Nawm generation based on distance map
Pull Request -
State: open - Opened by frheault 29 days ago
- 1 comment
#1025 - Error while building scilpy from source
Issue -
State: open - Opened by zhitao-guo about 1 month ago
#1024 - Update test data key to 'tractograms.zip' instead of 'atlas.zip'
Pull Request -
State: open - Opened by elyz081 about 1 month ago
- 3 comments
#1023 - Distance map
Pull Request -
State: closed - Opened by frheault about 1 month ago
- 3 comments
#1022 - [ENH] Add mrds scripts part 2
Pull Request -
State: open - Opened by arnaudbore about 2 months ago
- 1 comment
#1021 - [ENH] Add mrds scripts part 1
Pull Request -
State: open - Opened by arnaudbore about 2 months ago
- 2 comments
#1020 - Modify lesions_info to support labels instead of mask
Pull Request -
State: closed - Opened by frheault 2 months ago
- 1 comment
#1019 - ENH: Pad or crop volume using `scil_volume_reshape.py`
Pull Request -
State: open - Opened by AntoineTheb 2 months ago
- 4 comments
Labels: enhancement
#1018 - Removing unused argument in scil_bundle_fixel_analysis.py
Pull Request -
State: closed - Opened by karanphil 2 months ago
- 1 comment
#1017 - WIP: fODF interpolation (help needed)
Pull Request -
State: open - Opened by AntoineTheb 2 months ago
- 5 comments
Labels: bug, enhancement
#1016 - SCILPY-BOT Version 1
Pull Request -
State: open - Opened by jinan02 2 months ago
- 3 comments
#1015 - [ENH] Uniformize surface apply transformation
Pull Request -
State: closed - Opened by arnaudbore 2 months ago
- 2 comments
#1014 - [BF] Fix surfaces lib
Pull Request -
State: closed - Opened by arnaudbore 2 months ago
- 1 comment
#1013 - Bug while using scripts for surface files operation
Issue -
State: closed - Opened by zhitao-guo 2 months ago
- 1 comment
#1012 - [FIX] Missing parameter for background viz
Pull Request -
State: closed - Opened by levje 2 months ago
- 2 comments
#1011 - [ENH] Add script normalize bvec
Pull Request -
State: closed - Opened by arnaudbore 2 months ago
- 1 comment
#1010 - TODO: Harmonize `scil_labels_from_mask` and `scil_lesions_info`
Issue -
State: open - Opened by AntoineTheb 3 months ago
#1009 - ENH: rework `scil_tractogram_cut_streamlines` + `scil_labels_from_mask`
Pull Request -
State: closed - Opened by AntoineTheb 3 months ago
- 11 comments
#1008 - Some issues with dps and dpp
Issue -
State: open - Opened by arnaudbore 3 months ago
#1007 - scil_tractogram_filter_by_length save_rejected option does nothing
Issue -
State: open - Opened by karanphil 3 months ago
- 1 comment
#1006 - ENH: tractogram add dps
Pull Request -
State: closed - Opened by AntoineTheb 3 months ago
- 2 comments
Labels: enhancement
#1005 - Add create surface
Pull Request -
State: closed - Opened by arnaudbore 3 months ago
- 3 comments
#1004 - [ENH] Bundle fixel analysis script
Pull Request -
State: closed - Opened by karanphil 3 months ago
- 3 comments
#1003 - Update to work with Trimeshpy 0.0.4
Pull Request -
State: closed - Opened by frheault 3 months ago
- 1 comment
#1002 - [FIX] Empty remaining indices when filtering for a bundle
Pull Request -
State: closed - Opened by levje 4 months ago
- 2 comments
#1001 - Removing xform from convert script
Pull Request -
State: closed - Opened by frheault 4 months ago
- 2 comments
#1000 - [FIX] Typo in scil_dti_metrics script
Pull Request -
State: closed - Opened by AlexVCaron 4 months ago
- 2 comments
#999 - [FIX] 10 colors in BASE10 colors for visualization
Pull Request -
State: closed - Opened by AlexVCaron 4 months ago
- 1 comment
#998 - Update COMMIT AMICO - use args.processes
Pull Request -
State: closed - Opened by arnaudbore 4 months ago
- 2 comments
#997 - noddi multithread
Issue -
State: closed - Opened by arnaudbore 4 months ago
#996 - Precompute scripts
Pull Request -
State: closed - Opened by jinan02 4 months ago
- 1 comment
#995 - add assert scripts output tractogram
Issue -
State: open - Opened by arnaudbore 4 months ago
#994 - New script to compute similarity between mask and atlas (nii)
Pull Request -
State: closed - Opened by frheault 4 months ago
- 3 comments
#993 - Tractogram scripts part7: segmentation scripts
Pull Request -
State: closed - Opened by EmmaRenauld 4 months ago
- 2 comments
#992 - Alter tractogram (trim, cut, replace, subsample, transform)
Pull Request -
State: closed - Opened by frheault 5 months ago
- 2 comments
#991 - Tractogram scripts part6
Pull Request -
State: closed - Opened by EmmaRenauld 5 months ago
- 2 comments
#990 - [BF] Fix mask type - dwi apply bias field
Pull Request -
State: closed - Opened by arnaudbore 5 months ago
- 1 comment
#989 - [FIX] fixed typo in surface convert script
Pull Request -
State: closed - Opened by grahamlittlephd 5 months ago
- 1 comment
#988 - Fix wrong import in legacy file
Pull Request -
State: closed - Opened by EmmaRenauld 5 months ago
- 1 comment
#987 - Add param sub_sphere to tracking_local_dev
Pull Request -
State: closed - Opened by arnaudbore 5 months ago
- 1 comment
#986 - Fix verifications in volume_resample
Pull Request -
State: closed - Opened by EmmaRenauld 5 months ago
- 2 comments
#985 - Generate HDF5 from TRKs
Pull Request -
State: closed - Opened by frheault 5 months ago
- 3 comments
#984 - [WIP] Fix script fix_trk
Pull Request -
State: open - Opened by EmmaRenauld 5 months ago
- 2 comments
Labels: WIP
#983 - Tractogram scripts part 5
Pull Request -
State: closed - Opened by EmmaRenauld 5 months ago
- 5 comments
#982 - Easy tests reconst
Pull Request -
State: closed - Opened by EmmaRenauld 5 months ago
- 1 comment
#981 - BF Remove python 3.11 from install
Pull Request -
State: closed - Opened by arnaudbore 6 months ago
#980 - Fix install with version
Pull Request -
State: closed - Opened by arnaudbore 6 months ago
#979 - BF github action
Pull Request -
State: closed - Opened by arnaudbore 6 months ago
#978 - Add action to publish to testpypi
Pull Request -
State: closed - Opened by arnaudbore 6 months ago
- 1 comment
#977 - scilpy 2.0
Pull Request -
State: closed - Opened by arnaudbore 6 months ago
- 1 comment
#976 - NF - add PTT options to the local tracking script
Pull Request -
State: closed - Opened by gabknight 6 months ago
- 2 comments
#975 - Keyword-only arguments
Issue -
State: open - Opened by CHrlS98 6 months ago
#974 - FIX: scorer crash if only NC and --unique
Pull Request -
State: closed - Opened by AntoineTheb 6 months ago
- 1 comment
#973 - [FAKE PR] See coverage from scripts tests only
Pull Request -
State: open - Opened by EmmaRenauld 6 months ago
- 1 comment
#972 - [WIP] Denoise nl_means script
Pull Request -
State: open - Opened by EmmaRenauld 6 months ago
- 1 comment
Labels: WIP
#971 - [WIP] Fibertube Tracking
Pull Request -
State: open - Opened by VincentBeaud 6 months ago
- 5 comments
#970 - [VIZ] Add support for peak coloring
Issue -
State: open - Opened by AlexVCaron 6 months ago
#969 - Forgotten renaming
Pull Request -
State: closed - Opened by EmmaRenauld 6 months ago
- 1 comment
#968 - [FAKE PR] Coverage on unit tests only
Pull Request -
State: open - Opened by EmmaRenauld 6 months ago
- 2 comments
#967 - Unit test dpp dps management
Pull Request -
State: closed - Opened by EmmaRenauld 6 months ago
- 1 comment
#966 - [WIP] Remove scripts from coverage for testing
Pull Request -
State: closed - Opened by arnaudbore 6 months ago
- 3 comments
#965 - Small fixes and util addition
Pull Request -
State: closed - Opened by VincentBeaud 6 months ago
- 1 comment
#964 - Updating the BundleSeg reference
Pull Request -
State: closed - Opened by elyz081 6 months ago
- 1 comment
#963 - Fix issue 962
Pull Request -
State: closed - Opened by EmmaRenauld 6 months ago
- 1 comment
#962 - scil_tractogram_uniformize_endpoints.py : Can not use target_roi with an atlas and a label.
Issue -
State: closed - Opened by matthieudumont 6 months ago
- 2 comments
#961 - Tractogram scripts parts4
Pull Request -
State: closed - Opened by EmmaRenauld 6 months ago
- 4 comments
#960 - Apply transform to hdf5 error when DPP are present
Issue -
State: open - Opened by frheault 6 months ago
- 1 comment
#959 - switch to monkeypatch.chdir
Pull Request -
State: closed - Opened by AlexVCaron 6 months ago
- 2 comments
#958 - Tractogram scripts parts3
Pull Request -
State: closed - Opened by EmmaRenauld 6 months ago
- 2 comments
#957 - Load large fODF volumes using memmaps
Issue -
State: open - Opened by AlexVCaron 6 months ago
#956 - Uniformize help messages formatting
Issue -
State: open - Opened by AlexVCaron 6 months ago
#955 - Fix remove invalid overlap pts
Pull Request -
State: closed - Opened by frheault 6 months ago
- 2 comments
#954 - Tractogram scripts parts2
Pull Request -
State: closed - Opened by EmmaRenauld 6 months ago
- 2 comments
#953 - Close issue 698
Pull Request -
State: closed - Opened by EmmaRenauld 6 months ago
#952 - Lost options for PTT tracking
Issue -
State: closed - Opened by EmmaRenauld 6 months ago
#951 - [WIP] Add scripts for MRDS metrics along bundle
Pull Request -
State: open - Opened by ErickHernandezGutierrez 6 months ago
- 1 comment
#950 - Move utils.streamlines methods
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 2 comments
#949 - Add description and epilog to Synthesis b0
Pull Request -
State: closed - Opened by frheault 7 months ago
- 1 comment
#948 - Tractogram scripts part1
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 2 comments
#947 - Volumes scripts
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 3 comments
#946 - Last renaming
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 3 comments
#945 - [ENH] Add possibility to use a label mask with two values to cut streamlines
Pull Request -
State: closed - Opened by arnaudbore 7 months ago
- 3 comments
Labels: WIP
#944 - [ENH] Dipy 1.9
Pull Request -
State: closed - Opened by arnaudbore 7 months ago
- 2 comments
#943 - update help local and pft tracking
Issue -
State: closed - Opened by arnaudbore 7 months ago
- 1 comment
#942 - Volumes test
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 3 comments
#941 - Add test single shell NODDI
Issue -
State: open - Opened by arnaudbore 7 months ago
#940 - Image correlation correct?
Issue -
State: closed - Opened by EmmaRenauld 7 months ago
- 2 comments
#939 - NLmeans unclear!
Issue -
State: open - Opened by EmmaRenauld 7 months ago
- 1 comment
#938 - Update dvc requirements
Pull Request -
State: closed - Opened by AlexVCaron 7 months ago
- 1 comment
#937 - Verify mask fit with reference in get_data_as_mask
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 3 comments
#936 - Reconst scripts part4
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 2 comments
#935 - BUG : dvc cache partially used when packages are pulled
Issue -
State: closed - Opened by AlexVCaron 7 months ago
Labels: bug
#934 - [BF] Issue 932
Pull Request -
State: closed - Opened by arnaudbore 7 months ago
- 2 comments
#933 - Split load_and_verify_mti function
Pull Request -
State: closed - Opened by karanphil 7 months ago
- 1 comment
#932 - BUG: `scil_tractogram_commit.py` crashes without a mask
Issue -
State: closed - Opened by AntoineTheb 7 months ago
- 2 comments
Labels: bug
#931 - codevov does not cov multithread processes
Issue -
State: open - Opened by arnaudbore 7 months ago
- 2 comments
#930 - Adding msmt support and test to scil_frf_mean
Pull Request -
State: closed - Opened by karanphil 7 months ago
- 2 comments
#929 - Unit tests for the fiber coherence
Pull Request -
State: closed - Opened by EmmaRenauld 7 months ago
- 2 comments