scikit-image/scikit-image issues and pull requests

#7242 - Unexpected Output Channel Reduction in skimage.transform.rescale without Explicit channel_axis

Issue - State: open - Opened by tokiAi about 1 year ago - 8 comments
Labels: :page_facing_up: type: Documentation, :sleeping: Dormant

#7241 - Use correct default mode in docstring of `skimage.transform.swirl`

Pull Request - State: closed - Opened by tokiAi about 1 year ago - 1 comment
Labels: :page_facing_up: type: Documentation

#7240 - typo in swirl default mode

Issue - State: closed - Opened by tokiAi about 1 year ago - 2 comments
Labels: :beginner: Good first issue, :page_facing_up: type: Documentation

#7239 - Add rotation parameter to skimage.draw.ellipsoid

Issue - State: open - Opened by franciskasara about 1 year ago - 7 comments
Labels: :pray: Feature request

#7238 - Breaking change suggestions for morphological operators

Issue - State: open - Opened by crisluengo about 1 year ago - 5 comments
Labels: :pray: Feature request

#7237 - Fix parent module in an example in NumPy for images

Pull Request - State: closed - Opened by iod-ine about 1 year ago - 1 comment

#7236 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago
Labels: :wrench: type: Maintenance

#7235 - Fix User Guide watershed usage

Pull Request - State: closed - Opened by MattTheCuber about 1 year ago - 3 comments

#7234 - Fix broken function calls and syntax issues in user guide

Pull Request - State: closed - Opened by MattTheCuber about 1 year ago - 9 comments
Labels: :page_facing_up: type: Documentation

#7233 - pixel_graph causes TypeError in map_array if mask is not given but edge_dunction is given

Issue - State: closed - Opened by mao1756 about 1 year ago - 2 comments
Labels: :bug: Bug

#7232 - Sorting the coordinates of draw.ellipse

Pull Request - State: open - Opened by anamfatima1304 about 1 year ago - 2 comments
Labels: :fast_forward: type: Enhancement, :sos: To take over

#7231 - metrics.structural_similarity: win_size is not ignored if gaussian_weights is set to True

Issue - State: open - Opened by anwolosz about 1 year ago - 3 comments
Labels: :sleeping: Dormant, :bug: Bug

#7230 - Create SECURITY.md

Pull Request - State: closed - Opened by benharvie about 1 year ago - 8 comments
Labels: :page_facing_up: type: Documentation

#7229 - ninja: build stopped: subcommand failed

Issue - State: open - Opened by dcox1776 about 1 year ago - 12 comments
Labels: :bug: Bug

#7228 - Fix reference formatting for nitpicky sphinx

Pull Request - State: closed - Opened by soupault about 1 year ago - 8 comments
Labels: :page_facing_up: type: Documentation

#7227 - Screen for sphinx warnings in nightly CI jobs

Pull Request - State: open - Opened by lagru about 1 year ago - 5 comments
Labels: :robot: type: Infrastructure

#7226 - Silence PyData theme warning about new default for "navigation_with_keys"

Pull Request - State: closed - Opened by lagru about 1 year ago - 6 comments
Labels: :page_facing_up: type: Documentation

#7225 - Deprecate output and positional args in `filters.gaussian`

Pull Request - State: closed - Opened by lagru about 1 year ago - 6 comments
Labels: :arrow_down_small: Deprecation, :scroll: type: API, :hiking_boot: Path to skimage2

#7224 - Link to skimage contributing page on NUMFOCUS website is broken

Issue - State: closed - Opened by soupault about 1 year ago - 2 comments
Labels: :bug: Bug

#7223 - Add option for marching_cubes to use surface voxels as vertices

Issue - State: open - Opened by GusBusDraws about 1 year ago - 2 comments
Labels: :pray: Feature request

#7222 - Applying iRadon then Radon does not return array to original shape

Issue - State: closed - Opened by GeorgeWebber about 1 year ago - 6 comments
Labels: :bug: Bug

#7221 - ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject

Issue - State: closed - Opened by JohannesWiesner about 1 year ago - 8 comments
Labels: :bug: Bug

#7220 - Homography Estimation by Points, Lines and Ellipses Correspondence

Issue - State: open - Opened by RoyiAvital about 1 year ago - 4 comments
Labels: :pray: Feature request

#7219 - Remove rng parameter of binary_blobs() function in plot_random_walker_segmentation.py

Pull Request - State: open - Opened by aymuos15 about 1 year ago - 8 comments
Labels: :page_facing_up: type: Documentation

#7218 - Update Azure job name following the drop of Python 3.9

Pull Request - State: closed - Opened by soupault about 1 year ago
Labels: :robot: type: Infrastructure

#7217 - Drop support for Python 3.9

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago
Labels: :scroll: type: API

#7216 - Use `git switch` instead of `git checkout` or `git branch`

Pull Request - State: open - Opened by anamfatima1304 about 1 year ago - 4 comments
Labels: :page_facing_up: type: Documentation

#7215 - Apply black to `_hog.py` after previous merge lacking black

Pull Request - State: closed - Opened by lagru about 1 year ago - 1 comment
Labels: :wrench: type: Maintenance

#7214 - Unpin Cython after release of Cython 3.0.4

Pull Request - State: closed - Opened by lagru about 1 year ago
Labels: :wrench: type: Maintenance, :arrow_up: Upstream

#7213 - Replace `git checkout` with `git switch` where possible

Issue - State: open - Opened by lagru about 1 year ago - 3 comments
Labels: :beginner: Good first issue, :pray: Feature request

#7213 - Replace `git checkout` with `git switch` where possible

Issue - State: open - Opened by lagru about 1 year ago - 4 comments
Labels: :beginner: Good first issue, :pray: Feature request

#7212 - match_histograms turn high values into very low

Issue - State: closed - Opened by simonreise about 1 year ago - 3 comments
Labels: :bug: Bug

#7212 - match_histograms turn high values into very low

Issue - State: closed - Opened by simonreise about 1 year ago - 3 comments
Labels: :bug: Bug

#7211 - Add lazy loading to `skimage.metrics` module

Pull Request - State: closed - Opened by anamfatima1304 about 1 year ago - 9 comments
Labels: :chart_with_upwards_trend: type: Performance

#7211 - Add lazy loading to `skimage.metrics` module

Pull Request - State: closed - Opened by anamfatima1304 about 1 year ago - 9 comments
Labels: :chart_with_upwards_trend: type: Performance

#7210 - Add security policy

Pull Request - State: closed - Opened by lagru about 1 year ago - 5 comments
Labels: :page_facing_up: type: Documentation

#7209 - Speed up doctest of `calibrate_denoiser` by ~30 s

Pull Request - State: open - Opened by lagru about 1 year ago
Labels: :wrench: type: Maintenance

#7209 - Speed up doctest of `calibrate_denoiser` by ~30 s

Pull Request - State: open - Opened by lagru about 1 year ago
Labels: :wrench: type: Maintenance

#7208 - Pin Pillow to <10.1.0 until incompatibility with imageio is fixed

Pull Request - State: closed - Opened by lagru about 1 year ago - 1 comment
Labels: :wrench: type: Maintenance

#7207 - Incompatibility between pillow 10.1.0 and imageio<=2.31.5 breaks roundtrip test

Issue - State: closed - Opened by lagru about 1 year ago
Labels: :arrow_up: Upstream, :bug: Bug

#7206 - Proposal: sort draw.ellipse coordinates by default to make sure they are all contiguous

Issue - State: open - Opened by jni about 1 year ago - 7 comments
Labels: :beginner: Good first issue, :pray: Feature request

#7206 - Proposal: sort draw.ellipse coordinates by default to make sure they are all contiguous

Issue - State: open - Opened by jni about 1 year ago - 6 comments
Labels: :beginner: Good first issue, :pray: Feature request

#7205 - Circular thresholding (e.g. for hue or orientation features)

Issue - State: open - Opened by pohlt about 1 year ago - 23 comments
Labels: :pray: Feature request

#7204 - Pin Cython <3.0.2 in build configuration

Pull Request - State: closed - Opened by stefanv about 1 year ago - 2 comments
Labels: :wrench: type: Maintenance

#7203 - MAINT: remove llvm manual install from chocolatey

Pull Request - State: closed - Opened by MridulS about 1 year ago - 1 comment

#7202 - Make titles in RAG gallery examples more explicit

Pull Request - State: closed - Opened by anamfatima1304 about 1 year ago - 3 comments
Labels: :page_facing_up: type: Documentation

#7201 - Temporarily pin Cython to <3.0.3 until CI is fixed, take 2

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 3 comments
Labels: :wrench: type: Maintenance

#7200 - Fix chocolatey

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 1 comment
Labels: :wrench: type: Maintenance

#7199 - skimage.exposure.rescale_intensity uses far more memory than necessary

Issue - State: open - Opened by itamarst about 1 year ago - 4 comments
Labels: :chart_with_upwards_trend: type: Performance

#7198 - Create SECURITY.md

Issue - State: closed - Opened by psmoros about 1 year ago - 3 comments
Labels: :cry: Won't fix, :baby: type: New feature

#7197 - Use Black

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 10 comments
Labels: :wrench: type: Maintenance

#7196 - Update wording on stalebot to assume core devs dropped the ball

Pull Request - State: closed - Opened by jni about 1 year ago - 2 comments
Labels: :robot: type: Infrastructure

#7195 - Line length in PR is currently not checked?

Issue - State: closed - Opened by lagru about 1 year ago - 2 comments
Labels: :robot: type: Infrastructure

#7194 - Update docstring for SimilarityTransform.

Pull Request - State: open - Opened by mkcor about 1 year ago - 1 comment
Labels: :page_facing_up: type: Documentation, :speech_balloon: Discussion

#7193 - Remove obsolete meson instructions

Pull Request - State: closed - Opened by mkcor about 1 year ago - 3 comments
Labels: :wrench: type: Maintenance

#7192 - Add docstring to `skimage.graph` module

Pull Request - State: closed - Opened by anamfatima1304 about 1 year ago - 3 comments
Labels: :page_facing_up: type: Documentation

#7191 - skimage.measure.find_contours: add type hints

Pull Request - State: closed - Opened by adamjstewart about 1 year ago - 7 comments

#7190 - skimage.graph.MCP generates incorrect cumulative costs when start points have negative costs

Issue - State: open - Opened by Nardus about 1 year ago - 1 comment
Labels: :sleeping: Dormant, :bug: Bug

#7189 - Temporarily pin Cython to <3.0.3 until CI is fixed

Pull Request - State: closed - Opened by lagru about 1 year ago - 1 comment
Labels: :wrench: type: Maintenance, :arrow_up: Upstream

#7188 - Increase tolerance for moments test for 32 bit floats

Pull Request - State: closed - Opened by olebole about 1 year ago - 1 comment
Labels: :wrench: type: Maintenance

#7187 - Add docstring to `skimage.graph` module

Pull Request - State: closed - Opened by anamfatima1304 about 1 year ago - 4 comments
Labels: :page_facing_up: type: Documentation

#7186 - Do not compare types, use isinstance

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 1 comment
Labels: :wrench: type: Maintenance

#7185 - Prototype type hints for `skimage.filters` with mypy

Pull Request - State: open - Opened by lagru about 1 year ago
Labels: :baby: type: New feature

#7184 - Remove outdated & duplicate "preferred" field in `version_switcher.json`

Pull Request - State: closed - Opened by lagru about 1 year ago
Labels: :wrench: type: Maintenance

#7183 - Misleading use of "illuminant" and "observer" in rgb2lab

Issue - State: open - Opened by jjaju about 1 year ago - 3 comments
Labels: :sleeping: Dormant, :bug: Bug

#7182 - Update 0.22.0 release notes

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 1 comment
Labels: :page_facing_up: type: Documentation

#7181 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago
Labels: :wrench: type: Maintenance

#7180 - Use checkout action version 4

Pull Request - State: closed - Opened by rettinghaus about 1 year ago - 4 comments
Labels: :robot: type: Infrastructure

#7179 - Added harmonic filter

Pull Request - State: open - Opened by TheLittleChosenOne about 1 year ago - 3 comments
Labels: :baby: type: New feature

#7178 - Use trusted publisher

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago
Labels: :wrench: type: Maintenance

#7177 - Fix release notes error

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago
Labels: :wrench: type: Maintenance

#7176 - Make `unwrap_phase` fail for 2D input containing NaNs

Pull Request - State: open - Opened by lagru about 1 year ago - 2 comments
Labels: :adhesive_bandage: type: Bug fix

#7175 - Fix missing warnings import in `phase_cross_correlation`

Pull Request - State: closed - Opened by lagru about 1 year ago - 3 comments
Labels: :wrench: type: Maintenance

#7174 - Deprecate `return_error` in `phase_cross_correlation` only in 0.23

Pull Request - State: closed - Opened by lagru about 1 year ago
Labels: :scroll: type: API

#7173 - Cleanup for Python 3.12

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 3 comments
Labels: :wrench: type: Maintenance

#7172 - Remove pep8speaks config

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 3 comments
Labels: :wrench: type: Maintenance

#7171 - Use pre-commit bot

Pull Request - State: closed - Opened by jarrodmillman about 1 year ago - 4 comments
Labels: :wrench: type: Maintenance

#7170 - Plausible doesn't resolve access on a function / class level

Issue - State: open - Opened by lagru about 1 year ago - 2 comments
Labels: :page_facing_up: type: Documentation, :pray: Feature request, :sleeping: Dormant, :ice_cube: Backburner

#7169 - In phase_cross_correlation, allow adapting to new return value structure while still avoiding unnecessary computation

Issue - State: open - Opened by vreuter about 1 year ago - 5 comments
Labels: :chart_with_upwards_trend: type: Performance, :pray: Feature request, :ice_cube: Backburner

GitHub / scikit-image/scikit-image issues and pull requests