scidash/neuronunit issues and pull requests

#265 - unresolved merge conflict in requirements.txt

Issue - State: open - Opened by anilbey 5 months ago

#264 - Relax constraints on install requirements

Issue - State: open - Opened by mwatts15 over 2 years ago - 1 comment

#263 - #262 chore: fix missing quote for PYNN support detection

Pull Request - State: closed - Opened by zsinnema over 3 years ago - 1 comment

#262 - Missing closing '

Issue - State: closed - Opened by zsinnema over 3 years ago - 1 comment

#261 - fix: fix for sciunit.utils.TemporaryDirectory issue in backend base

Pull Request - State: closed - Opened by zsinnema over 3 years ago - 1 comment

#260 - Merge error in backend init.py

Issue - State: open - Opened by zsinnema over 3 years ago - 2 comments

#259 - Migrate away from travis

Issue - State: open - Opened by russelljjarvis over 3 years ago - 2 comments
Labels: enhancement

#258 - Remade for access to scidash travis

Pull Request - State: closed - Opened by russelljjarvis over 3 years ago - 2 comments

#257 - DataTC factored out replaced by sciunit.models.RunnableModel

Pull Request - State: closed - Opened by russelljjarvis over 3 years ago - 2 comments

#256 - optimization -> dev (#255)

Pull Request - State: closed - Opened by rgerkin over 3 years ago - 2 comments

#255 - optimization -> optimization

Pull Request - State: closed - Opened by russelljjarvis over 3 years ago

#254 - create branch optimization based on dev, that I can merge pull requests into.

Issue - State: closed - Opened by russelljjarvis over 3 years ago - 2 comments

#253 - Optimization

Pull Request - State: closed - Opened by russelljjarvis over 3 years ago - 1 comment

#252 - the great merge sequel.

Pull Request - State: closed - Opened by russelljjarvis almost 4 years ago

#251 - Removing duplicate jNeuroMLBackend import

Pull Request - State: closed - Opened by mwatts15 about 4 years ago - 1 comment

#250 - Installation Fails on Windows

Issue - State: closed - Opened by ChihweiLHBird about 4 years ago - 1 comment
Labels: bug

#249 - Update Unit Test Cases and Other Improvements

Pull Request - State: closed - Opened by ChihweiLHBird about 4 years ago - 2 comments
Labels: enhancement

#248 - Added function to return state variables

Pull Request - State: closed - Opened by kedoxey about 4 years ago - 2 comments

#247 - Duplicated content injected current test protocol/parameter

Issue - State: open - Opened by russelljjarvis about 4 years ago

#246 - 2.5 different code locations that determine sim_length need to be collapsed into one.

Issue - State: open - Opened by russelljjarvis over 4 years ago
Labels: Bad Design

#245 - documentation chapters of NeuronUnit should be upgraded to Unit Tests via pytest-ipynb

Issue - State: open - Opened by russelljjarvis over 4 years ago
Labels: enhancement

#244 - Major NU interface redesigns could come with interface diagrams.

Issue - State: open - Opened by russelljjarvis over 4 years ago
Labels: enhancement

#243 - NU test.protocol should be flat or more predictable to traverse.

Issue - State: open - Opened by russelljjarvis over 4 years ago
Labels: enhancement, Bad Design

#242 - Confirm that NeuronUnits jNeuromLB backend really can be regarded as a ground truth.

Issue - State: open - Opened by russelljjarvis over 4 years ago - 7 comments
Labels: bug

#241 - Docs

Pull Request - State: closed - Opened by rgerkin over 4 years ago - 1 comment

#240 - Update conf.py

Pull Request - State: closed - Opened by ChihweiLHBird over 4 years ago - 1 comment

#239 - Update .rst files and index page

Pull Request - State: closed - Opened by ChihweiLHBird over 4 years ago - 1 comment

#238 - Adding the content of README.md file to the index.rst file

Pull Request - State: closed - Opened by ChihweiLHBird over 4 years ago - 1 comment

#237 - Druckmann Tests are not proper tests

Issue - State: open - Opened by rgerkin over 4 years ago

#236 - Merge dev into master

Pull Request - State: open - Opened by rgerkin over 4 years ago - 2 comments

#235 - Sciunit judge no longer works with static Models. How can I opt of using the ProtocolToFeaturesTest?

Issue - State: open - Opened by russelljjarvis over 4 years ago - 8 comments

#234 - Use standardized units throughout

Issue - State: open - Opened by rgerkin over 4 years ago
Labels: enhancement

#233 - Test Suites should be dictionaries not lists.

Issue - State: closed - Opened by russelljjarvis almost 5 years ago - 7 comments
Labels: enhancement

#232 - A document Notice to debug set PARALLEL_CONFIDENT=False

Issue - State: closed - Opened by russelljjarvis almost 5 years ago
Labels: documenting completed work/methods

#231 - Documenting all Score edge cases that break optimization gradients

Issue - State: open - Opened by rgerkin almost 5 years ago - 3 comments

#230 - newer test class for passive elephant tests breaks parallelism in dask, in the case of brian2 backend.

Issue - State: closed - Opened by russelljjarvis almost 5 years ago - 4 comments

#229 - With notebooks showing optimization on experimental waveform shapes and Allen Data

Pull Request - State: closed - Opened by russelljjarvis almost 5 years ago - 2 comments

#228 - Don't act on this I will keep updating it.

Pull Request - State: closed - Opened by russelljjarvis almost 5 years ago - 1 comment

#227 - Use Allen Features to optimize

Issue - State: open - Opened by russelljjarvis about 5 years ago - 11 comments
Labels: documenting completed work/methods

#226 - Made light NU optimizer installable for (brian2, and AllenGLIF without Docker).

Issue - State: open - Opened by russelljjarvis about 5 years ago - 2 comments
Labels: documenting partially completed work/methods.

#225 - Make Sciunit Optimize a method of NU test.

Issue - State: open - Opened by russelljjarvis about 5 years ago - 3 comments
Labels: enhancement

#224 - Migrate morphology.py to MorphoUnit

Issue - State: open - Opened by rgerkin about 5 years ago

#223 - Replacing ReducedModel with VeryReducedModel desirable but results in cryptic errors.

Issue - State: closed - Opened by russelljjarvis about 5 years ago - 4 comments
Labels: bug

#222 - NeuroMLDBModel current amplitudes that are multiple of rheobase

Issue - State: open - Opened by rgerkin over 5 years ago - 7 comments
Labels: bug

#221 - ChannelModel class returns ReceivesSquareCurrent as failed capability for EGL-19.channel model

Issue - State: open - Opened by NeZanyat over 5 years ago - 7 comments

#220 - Merge into Dash

Pull Request - State: closed - Opened by rgerkin over 5 years ago - 1 comment

#219 - Different score ReducedModel/InputResistanceTest

Issue - State: open - Opened by NeZanyat over 5 years ago - 9 comments

#218 - No units, observation and params schema in test

Issue - State: closed - Opened by NeZanyat over 5 years ago - 4 comments

#217 - Travis fix

Pull Request - State: closed - Opened by JustasB over 5 years ago

#216 - Move unit testing datasets elsewhere

Issue - State: open - Opened by rgerkin over 5 years ago - 4 comments

#215 - Enable daily Travis CI builds

Issue - State: closed - Opened by JustasB over 5 years ago - 1 comment
Labels: enhancement

#214 - Easier debugging with pyNeuroML and especially NEURON

Issue - State: open - Opened by rgerkin over 5 years ago
Labels: enhancement

#213 - Change from hard-coded to NeuroML-derived variable names in NEURON Backend

Issue - State: open - Opened by rgerkin over 5 years ago
Labels: enhancement

#212 - Simpler instance less capability checks

Pull Request - State: closed - Opened by NeZanyat over 5 years ago - 1 comment

#211 - Unit test fix test

Pull Request - State: closed - Opened by JustasB over 5 years ago - 1 comment

#210 - Dev <- Dash

Pull Request - State: closed - Opened by rgerkin over 5 years ago - 1 comment

#209 - Dev -> Dash

Pull Request - State: closed - Opened by rgerkin over 5 years ago - 1 comment

#208 - Can't get values from memory_cache because hash was changed

Issue - State: closed - Opened by NeZanyat over 5 years ago - 5 comments

#207 - KeyError: 'injected_square_current'

Issue - State: closed - Opened by NeZanyat over 5 years ago - 5 comments
Labels: bug

#206 - Solution to use NE python API for bimodality tests fails, due to NeuroElectro query syntax

Issue - State: open - Opened by russelljjarvis over 5 years ago - 3 comments
Labels: enhancement, documenting partially completed work/methods., needs feedback

#205 - WIP: Instance-less capabilities

Pull Request - State: closed - Opened by NeZanyat over 5 years ago - 5 comments

#204 - Additional morphology tests

Pull Request - State: closed - Opened by JustasB over 5 years ago - 2 comments

#203 - Way to check class capabilities without instantiating it

Issue - State: closed - Opened by NeZanyat over 5 years ago - 5 comments

#202 - Morphology unit tests, documentation, and pyLM install as extra

Pull Request - State: closed - Opened by JustasB over 5 years ago

#201 - broken dev build

Issue - State: closed - Opened by JustasB over 5 years ago - 5 comments

#200 - Fixes to Druckmann tests

Issue - State: closed - Opened by russelljjarvis over 5 years ago - 2 comments

#199 - Including L-Measure for morphology tests

Issue - State: closed - Opened by JustasB over 5 years ago - 4 comments

#198 - Add a README.ipynb (and companion README.md) to every subdirectory

Issue - State: open - Opened by rgerkin over 5 years ago - 2 comments
Labels: enhancement

#197 - Could not find a version that satisfies the requirement sciunit-9999 (from neuronunit==0.19)

Issue - State: closed - Opened by gidili over 5 years ago - 2 comments

#196 - sciunit.log depreciated?

Issue - State: closed - Opened by russelljjarvis over 5 years ago - 1 comment

#195 - Dev install fix

Pull Request - State: closed - Opened by rgerkin over 5 years ago - 3 comments

#194 - Fix requirements parser to support pip install -r requirements.txt

Issue - State: closed - Opened by rgerkin almost 6 years ago - 1 comment

#193 - Use dynamic binding of methods, to make methods available, while avoiding re-classing pyNN backends as NU backends.

Issue - State: open - Opened by russelljjarvis almost 6 years ago - 3 comments
Labels: enhancement

GitHub / scidash/neuronunit issues and pull requests