Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / schrodinger/pymol-open-source issues and pull requests
#285 - Fix GIL for get_object_ttt and friends
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
- 1 comment
#284 - Educational-Use-Only PyMOL Builds
Issue -
State: closed - Opened by brendenbarcellona over 1 year ago
- 1 comment
#283 - Receiving 2 errors during Installation
Issue -
State: closed - Opened by egmnb over 1 year ago
- 1 comment
#282 - PyMOL-Error: can't find 'pymol.povray'
Issue -
State: open - Opened by eusebiu over 1 year ago
- 1 comment
#281 - cmd.png cannot inherit the result of cmd.ray for image output
Issue -
State: closed - Opened by SynchronyML over 1 year ago
- 4 comments
#280 - Is this repository missing some release tags?
Issue -
State: closed - Opened by alerque over 1 year ago
- 3 comments
#279 - NotImplementedError: compile with --glut error!!!!
Issue -
State: open - Opened by biotech70 over 1 year ago
- 2 comments
#278 - Transforming vertices to match original pdb reference frame using `transform_selection`
Issue -
State: open - Opened by OliviaViessmann over 1 year ago
#277 - "ReadMOLFile-Error: bad atom count" on Pymol
Issue -
State: closed - Opened by terrilvallikalam over 1 year ago
- 2 comments
#276 - Avoid 3x2 grid for size=4
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
- 2 comments
#275 - Doubt about selection algebra
Issue -
State: closed - Opened by pslacerda over 1 year ago
- 10 comments
#274 - ImportError: symbol not found in flat namespace '_PlugIOManagerFreeAll'
Issue -
State: closed - Opened by gauravdiwan89 over 1 year ago
- 2 comments
#273 - Stable release branch tags
Issue -
State: closed - Opened by mbanck over 1 year ago
- 4 comments
#272 - Unexpected behavior doing state-specific distance-based selection
Issue -
State: open - Opened by shaoqx over 1 year ago
#271 - Workaround shader disable encountered in combination with wayland
Pull Request -
State: closed - Opened by bisdan over 1 year ago
- 1 comment
#270 - The results of Pymol script are inconsistent with the Python script results.
Issue -
State: open - Opened by xiejuande over 1 year ago
#269 - Cartoon_trancparency command not working after using it on specific residue ranges
Issue -
State: closed - Opened by TheWizier over 1 year ago
- 2 comments
#268 - grid mode background color per grid cell
Pull Request -
State: closed - Opened by speleo3 almost 2 years ago
#267 - grid mode background color per grid cell
Issue -
State: closed - Opened by speleo3 almost 2 years ago
- 3 comments
#266 - Not able to load partial pse using API
Issue -
State: closed - Opened by VonBoss almost 2 years ago
- 4 comments
#265 - Electrostatic potentials at surface: what does ramp_new do exactly?
Issue -
State: open - Opened by eloyvallinaes almost 2 years ago
- 1 comment
#264 - TypeError: setMaximum(self, int) when opening Plugin Lighting Settings
Issue -
State: closed - Opened by cgohlke almost 2 years ago
- 2 comments
#263 - No module named pymol
Issue -
State: open - Opened by TianmingQu almost 2 years ago
- 2 comments
Labels: third-party-packaging
#262 - Fix testSave_symmetry__mmtf for msgpack-cpp=4.1.2
Pull Request -
State: closed - Opened by speleo3 almost 2 years ago
- 1 comment
#261 - Fix crash when loading discrete object
Pull Request -
State: closed - Opened by speleo3 almost 2 years ago
- 1 comment
#260 - Fix build error in Pool.__del__
Pull Request -
State: closed - Opened by speleo3 almost 2 years ago
- 2 comments
#259 - New setting: cell_centered
Pull Request -
State: closed - Opened by speleo3 almost 2 years ago
- 2 comments
#258 - Support centered cell rendering
Issue -
State: closed - Opened by speleo3 almost 2 years ago
#257 - Automatically update selection based on frame
Issue -
State: closed - Opened by cyril-schroeder-ox about 2 years ago
- 2 comments
#256 - Undo has been disabled. Reason: Object is too large
Issue -
State: closed - Opened by ValZapod about 2 years ago
- 1 comment
#255 - tried to multi-delete selections, received traceback
Issue -
State: closed - Opened by carter-canedy about 2 years ago
- 1 comment
#254 - pymol window exits when maximining its window
Issue -
State: open - Opened by lyw8120 about 2 years ago
#253 - PyMOL traceback error when building residues
Issue -
State: closed - Opened by mtelia about 2 years ago
- 1 comment
#252 - Error about building model
Issue -
State: closed - Opened by hexa-tert about 2 years ago
- 3 comments
#251 - set_name: Selector-Error: Invalid selection name
Issue -
State: closed - Opened by sbwiecko about 2 years ago
- 3 comments
#250 - Python 3.9 support
Issue -
State: closed - Opened by shaoqx about 2 years ago
- 6 comments
#249 - ModuleNotFoundError: No module named 'requests'
Issue -
State: closed - Opened by MarcAmil30 about 2 years ago
- 2 comments
#248 - PyMOL is not responsive when performing task in background
Issue -
State: open - Opened by kexul about 2 years ago
#246 - MESA loader - pymol is looking for graphics files in the wrong place on Ubuntu 22.04
Issue -
State: open - Opened by dc623 about 2 years ago
- 2 comments
#245 - Import Error (chempy): conflict with chempy from pip
Issue -
State: open - Opened by jfmoulin about 2 years ago
- 2 comments
#244 - Compatibility of sessions between PyMOL (<=) 2.3 and PyMOL 2.5
Issue -
State: closed - Opened by jr-marchand about 2 years ago
- 1 comment
#243 - Modify torsion angles of multiple nucleotides
Issue -
State: open - Opened by anilkurkcu about 2 years ago
#242 - Problem encountered in install pymol
Issue -
State: closed - Opened by sippmilkwolf about 2 years ago
#241 - Issue when loading a multimodel pdb file using discrete=1
Issue -
State: closed - Opened by giagitom about 2 years ago
- 1 comment
#240 - When exporting a gif movie, the colors become weird.
Issue -
State: closed - Opened by AustinApple over 2 years ago
- 2 comments
#239 - File Size Limit for DCD Plugin
Issue -
State: closed - Opened by christos-efthymiou over 2 years ago
- 2 comments
#238 - Failed to download resource "pymol_bottle_manifest"
Issue -
State: closed - Opened by structuralcbh over 2 years ago
- 6 comments
Labels: third-party-packaging
#237 - pymol: Failed to download resource "pymol--Pmw"
Issue -
State: open - Opened by Xiangzh-ang over 2 years ago
- 2 comments
Labels: third-party-packaging
#236 - correct plugin install behavior
Pull Request -
State: closed - Opened by songyongshun over 2 years ago
- 1 comment
#235 - Use XDG_CONFIG_HOME for pymolrc
Pull Request -
State: closed - Opened by danpf over 2 years ago
- 1 comment
#234 - pymol crashes when downloading pdb files
Issue -
State: closed - Opened by karolinluger over 2 years ago
- 1 comment
#233 - Fix crash in find_molfile_plugin
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 1 comment
#232 - ImportError: libGL.so.1: cannot open shared object file: No such file or directory
Issue -
State: closed - Opened by MilesYyh over 2 years ago
- 2 comments
#231 - PyMOL after compilation on macOS 10.13.6
Issue -
State: open - Opened by houdini69 over 2 years ago
#230 - Compilation failed macOS
Issue -
State: closed - Opened by houdini69 over 2 years ago
- 2 comments
#229 - Pymol for mac not running python scripts
Issue -
State: closed - Opened by Adele-Williamson over 2 years ago
- 2 comments
#228 - Fix for missing scene panel dialog in Tk GUI
Pull Request -
State: closed - Opened by KrisJanssen over 2 years ago
- 2 comments
#227 - iterate: Add explicit_valence and explicit_degree
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 2 comments
#226 - Fix fallback MMTF loader
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 1 comment
#225 - Fallback MMTF loader support broken
Issue -
State: closed - Opened by speleo3 over 2 years ago
#224 - pymol.cmd.png(...quiet=1, ray=0) displays "Ray: render time..." message
Issue -
State: closed - Opened by jonathanking over 2 years ago
- 1 comment
Labels: cannot-reproduce
#223 - strange error that app/org.pymol.PyMOL/master is not installed
Issue -
State: closed - Opened by taraspinosa over 2 years ago
- 1 comment
Labels: third-party-packaging
#222 - No pymol._cmd file available.
Issue -
State: closed - Opened by smiles724 over 2 years ago
- 2 comments
#221 - Mutagenesis Wizzard stores hydrogen AtomName numbering in the wrong order, during PDB export.
Issue -
State: open - Opened by pguillem over 2 years ago
#220 - Coordinates close to zero break `cgo.CONE`
Issue -
State: closed - Opened by kmdalton over 2 years ago
Labels: good first issue
#219 - No module named 'pymol.cmd'
Issue -
State: closed - Opened by biotech70 over 2 years ago
- 8 comments
#218 - Create selection by state
Issue -
State: open - Opened by AlessioDelConte over 2 years ago
- 1 comment
#217 - Need to port from distutils to setuptools
Issue -
State: closed - Opened by adamjstewart over 2 years ago
- 2 comments
#216 - How to dock the two different windows in the PyMol interface (GUI)?
Issue -
State: open - Opened by urban233 over 2 years ago
#215 - Error fetching pdb id 7BV2
Issue -
State: open - Opened by giagitom almost 3 years ago
- 5 comments
#214 - Allow building with latst vtk-m release (v1.7)
Pull Request -
State: closed - Opened by reneeotten almost 3 years ago
- 1 comment
#213 - More consistent cmd.load_model discrete behavior
Pull Request -
State: closed - Opened by speleo3 almost 3 years ago
- 1 comment
#212 - cmd.load_model discrete argument unexpected behavior
Issue -
State: closed - Opened by speleo3 almost 3 years ago
- 1 comment
#211 - FlatPak version needs network permissions for Get PDB.. menu option
Issue -
State: closed - Opened by dyelar almost 3 years ago
- 2 comments
Labels: third-party-packaging
#210 - is it possible to have this packaged for homebrew?
Issue -
State: closed - Opened by jlawgit almost 3 years ago
- 1 comment
Labels: third-party-packaging
#209 - VRML export of distance measurements broken
Issue -
State: closed - Opened by giagitom almost 3 years ago
- 8 comments
Labels: import-export
#208 - How to use geomery parameter with 'attach' command?
Issue -
State: open - Opened by Glucksistemi almost 3 years ago
- 2 comments
Labels: pymolwiki
#204 - Closing pymol which started from python console crashes python
Issue -
State: open - Opened by stefdoerr almost 3 years ago
- 5 comments
#203 - Add `fetch_path` to `is_session_blacklisted`
Pull Request -
State: closed - Opened by speleo3 almost 3 years ago
- 2 comments
#202 - get_sasa_relative: Add subsele argument
Pull Request -
State: closed - Opened by speleo3 almost 3 years ago
- 2 comments
#200 - MacOS menu bars inaccessible after initial launch
Issue -
State: open - Opened by adreasnow almost 3 years ago
- 4 comments
#199 - Fix guide selector bug
Pull Request -
State: closed - Opened by speleo3 almost 3 years ago
- 2 comments
#197 - Some include paths missing when building in RHEL 8.4
Issue -
State: open - Opened by vascoosx almost 3 years ago
- 1 comment
Labels: build-env-issue
#196 - get_area treatement of solvent && flag ignore
Issue -
State: closed - Opened by brianosmith almost 3 years ago
- 2 comments
Labels: pymolwiki
#195 - error: command 'gcc' failed with exit status 1
Issue -
State: closed - Opened by masoudbio almost 3 years ago
- 1 comment
Labels: build-env-issue
#193 - build failure on macOS 10.13 and below
Issue -
State: closed - Opened by reneeotten about 3 years ago
- 12 comments
#190 - Can not display GUI
Issue -
State: open - Opened by freeenergylab about 3 years ago
- 7 comments
Labels: third-party-packaging
#188 - "set valence,1 or off " invalid
Issue -
State: closed - Opened by SynchronyML over 3 years ago
- 2 comments
#184 - Cgo plane hidden after ray tracing
Issue -
State: closed - Opened by smutao over 3 years ago
- 2 comments
Labels: rendering-ray
#183 - request for reduced functionality apbs_gui for open source pymol
Issue -
State: closed - Opened by jwhowarth over 3 years ago
- 1 comment
#182 - AttributeError: module 'PyQt5.QtGui' has no attribute 'QMenu'
Issue -
State: closed - Opened by biotech70 over 3 years ago
- 8 comments
#181 - batch mode prints license etc and exits
Issue -
State: open - Opened by nicman23 over 3 years ago
- 1 comment
#180 - Add desktop and metadata files.
Pull Request -
State: open - Opened by kevinsmia1939 over 3 years ago
#179 - How to compile with VTKM support?
Issue -
State: open - Opened by giagitom over 3 years ago
- 7 comments
#178 - PyMOL failed to start
Issue -
State: open - Opened by fabioatuib over 3 years ago
- 2 comments
#171 - set_bond line_width not working
Issue -
State: open - Opened by igordub over 3 years ago
- 1 comment
#158 - interior color transparency
Issue -
State: open - Opened by giagitom over 3 years ago
- 5 comments
Labels: rendering-ray
#156 - ReadMolFile-Error: bad coordinate
Issue -
State: closed - Opened by janlittletwinstar over 3 years ago
- 6 comments
Labels: incomplete, data-issue
#155 - VRML2 color export problem on cylinders making nucleotides borders
Issue -
State: open - Opened by giagitom over 3 years ago
- 2 comments
Labels: import-export
#139 - pymol homebrew install broken by latest glew homebrew update
Issue -
State: closed - Opened by n-codina almost 4 years ago
- 5 comments
Labels: build-env-issue, third-party-packaging