Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / schrodinger/pymol-open-source issues and pull requests

#285 - Fix GIL for get_object_ttt and friends

Pull Request - State: closed - Opened by speleo3 over 1 year ago - 1 comment

#284 - Educational-Use-Only PyMOL Builds

Issue - State: closed - Opened by brendenbarcellona over 1 year ago - 1 comment

#283 - Receiving 2 errors during Installation

Issue - State: closed - Opened by egmnb over 1 year ago - 1 comment

#282 - PyMOL-Error: can't find 'pymol.povray'

Issue - State: open - Opened by eusebiu over 1 year ago - 1 comment

#281 - cmd.png cannot inherit the result of cmd.ray for image output

Issue - State: closed - Opened by SynchronyML over 1 year ago - 4 comments

#280 - Is this repository missing some release tags?

Issue - State: closed - Opened by alerque over 1 year ago - 3 comments

#279 - NotImplementedError: compile with --glut error!!!!

Issue - State: open - Opened by biotech70 over 1 year ago - 2 comments

#277 - "ReadMOLFile-Error: bad atom count" on Pymol

Issue - State: closed - Opened by terrilvallikalam over 1 year ago - 2 comments

#276 - Avoid 3x2 grid for size=4

Pull Request - State: closed - Opened by speleo3 over 1 year ago - 2 comments

#275 - Doubt about selection algebra

Issue - State: closed - Opened by pslacerda over 1 year ago - 10 comments

#274 - ImportError: symbol not found in flat namespace '_PlugIOManagerFreeAll'

Issue - State: closed - Opened by gauravdiwan89 over 1 year ago - 2 comments

#273 - Stable release branch tags

Issue - State: closed - Opened by mbanck over 1 year ago - 4 comments

#271 - Workaround shader disable encountered in combination with wayland

Pull Request - State: closed - Opened by bisdan over 1 year ago - 1 comment

#268 - grid mode background color per grid cell

Pull Request - State: closed - Opened by speleo3 almost 2 years ago

#267 - grid mode background color per grid cell

Issue - State: closed - Opened by speleo3 almost 2 years ago - 3 comments

#266 - Not able to load partial pse using API

Issue - State: closed - Opened by VonBoss almost 2 years ago - 4 comments

#265 - Electrostatic potentials at surface: what does ramp_new do exactly?

Issue - State: open - Opened by eloyvallinaes almost 2 years ago - 1 comment

#264 - TypeError: setMaximum(self, int) when opening Plugin Lighting Settings

Issue - State: closed - Opened by cgohlke almost 2 years ago - 2 comments

#263 - No module named pymol

Issue - State: open - Opened by TianmingQu almost 2 years ago - 2 comments
Labels: third-party-packaging

#262 - Fix testSave_symmetry__mmtf for msgpack-cpp=4.1.2

Pull Request - State: closed - Opened by speleo3 almost 2 years ago - 1 comment

#261 - Fix crash when loading discrete object

Pull Request - State: closed - Opened by speleo3 almost 2 years ago - 1 comment

#260 - Fix build error in Pool.__del__

Pull Request - State: closed - Opened by speleo3 almost 2 years ago - 2 comments

#259 - New setting: cell_centered

Pull Request - State: closed - Opened by speleo3 almost 2 years ago - 2 comments

#258 - Support centered cell rendering

Issue - State: closed - Opened by speleo3 almost 2 years ago

#257 - Automatically update selection based on frame

Issue - State: closed - Opened by cyril-schroeder-ox about 2 years ago - 2 comments

#256 - Undo has been disabled. Reason: Object is too large

Issue - State: closed - Opened by ValZapod about 2 years ago - 1 comment

#255 - tried to multi-delete selections, received traceback

Issue - State: closed - Opened by carter-canedy about 2 years ago - 1 comment

#254 - pymol window exits when maximining its window

Issue - State: open - Opened by lyw8120 about 2 years ago

#253 - PyMOL traceback error when building residues

Issue - State: closed - Opened by mtelia about 2 years ago - 1 comment

#252 - Error about building model

Issue - State: closed - Opened by hexa-tert about 2 years ago - 3 comments

#251 - set_name: Selector-Error: Invalid selection name

Issue - State: closed - Opened by sbwiecko about 2 years ago - 3 comments

#250 - Python 3.9 support

Issue - State: closed - Opened by shaoqx about 2 years ago - 6 comments

#249 - ModuleNotFoundError: No module named 'requests'

Issue - State: closed - Opened by MarcAmil30 about 2 years ago - 2 comments

#248 - PyMOL is not responsive when performing task in background

Issue - State: open - Opened by kexul about 2 years ago

#245 - Import Error (chempy): conflict with chempy from pip

Issue - State: open - Opened by jfmoulin about 2 years ago - 2 comments

#244 - Compatibility of sessions between PyMOL (<=) 2.3 and PyMOL 2.5

Issue - State: closed - Opened by jr-marchand about 2 years ago - 1 comment

#243 - Modify torsion angles of multiple nucleotides

Issue - State: open - Opened by anilkurkcu about 2 years ago

#242 - Problem encountered in install pymol

Issue - State: closed - Opened by sippmilkwolf about 2 years ago

#241 - Issue when loading a multimodel pdb file using discrete=1

Issue - State: closed - Opened by giagitom about 2 years ago - 1 comment

#240 - When exporting a gif movie, the colors become weird.

Issue - State: closed - Opened by AustinApple over 2 years ago - 2 comments

#239 - File Size Limit for DCD Plugin

Issue - State: closed - Opened by christos-efthymiou over 2 years ago - 2 comments

#238 - Failed to download resource "pymol_bottle_manifest"

Issue - State: closed - Opened by structuralcbh over 2 years ago - 6 comments
Labels: third-party-packaging

#237 - pymol: Failed to download resource "pymol--Pmw"

Issue - State: open - Opened by Xiangzh-ang over 2 years ago - 2 comments
Labels: third-party-packaging

#236 - correct plugin install behavior

Pull Request - State: closed - Opened by songyongshun over 2 years ago - 1 comment

#235 - Use XDG_CONFIG_HOME for pymolrc

Pull Request - State: closed - Opened by danpf over 2 years ago - 1 comment

#234 - pymol crashes when downloading pdb files

Issue - State: closed - Opened by karolinluger over 2 years ago - 1 comment

#233 - Fix crash in find_molfile_plugin

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 1 comment

#231 - PyMOL after compilation on macOS 10.13.6

Issue - State: open - Opened by houdini69 over 2 years ago

#230 - Compilation failed macOS

Issue - State: closed - Opened by houdini69 over 2 years ago - 2 comments

#229 - Pymol for mac not running python scripts

Issue - State: closed - Opened by Adele-Williamson over 2 years ago - 2 comments

#228 - Fix for missing scene panel dialog in Tk GUI

Pull Request - State: closed - Opened by KrisJanssen over 2 years ago - 2 comments

#227 - iterate: Add explicit_valence and explicit_degree

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 2 comments

#226 - Fix fallback MMTF loader

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 1 comment

#225 - Fallback MMTF loader support broken

Issue - State: closed - Opened by speleo3 over 2 years ago

#224 - pymol.cmd.png(...quiet=1, ray=0) displays "Ray: render time..." message

Issue - State: closed - Opened by jonathanking over 2 years ago - 1 comment
Labels: cannot-reproduce

#223 - strange error that app/org.pymol.PyMOL/master is not installed

Issue - State: closed - Opened by taraspinosa over 2 years ago - 1 comment
Labels: third-party-packaging

#222 - No pymol._cmd file available.

Issue - State: closed - Opened by smiles724 over 2 years ago - 2 comments

#220 - Coordinates close to zero break `cgo.CONE`

Issue - State: closed - Opened by kmdalton over 2 years ago
Labels: good first issue

#219 - No module named 'pymol.cmd'

Issue - State: closed - Opened by biotech70 over 2 years ago - 8 comments

#218 - Create selection by state

Issue - State: open - Opened by AlessioDelConte over 2 years ago - 1 comment

#217 - Need to port from distutils to setuptools

Issue - State: closed - Opened by adamjstewart over 2 years ago - 2 comments

#215 - Error fetching pdb id 7BV2

Issue - State: open - Opened by giagitom almost 3 years ago - 5 comments

#214 - Allow building with latst vtk-m release (v1.7)

Pull Request - State: closed - Opened by reneeotten almost 3 years ago - 1 comment

#213 - More consistent cmd.load_model discrete behavior

Pull Request - State: closed - Opened by speleo3 almost 3 years ago - 1 comment

#212 - cmd.load_model discrete argument unexpected behavior

Issue - State: closed - Opened by speleo3 almost 3 years ago - 1 comment

#211 - FlatPak version needs network permissions for Get PDB.. menu option

Issue - State: closed - Opened by dyelar almost 3 years ago - 2 comments
Labels: third-party-packaging

#210 - is it possible to have this packaged for homebrew?

Issue - State: closed - Opened by jlawgit almost 3 years ago - 1 comment
Labels: third-party-packaging

#209 - VRML export of distance measurements broken

Issue - State: closed - Opened by giagitom almost 3 years ago - 8 comments
Labels: import-export

#208 - How to use geomery parameter with 'attach' command?

Issue - State: open - Opened by Glucksistemi almost 3 years ago - 2 comments
Labels: pymolwiki

#204 - Closing pymol which started from python console crashes python

Issue - State: open - Opened by stefdoerr almost 3 years ago - 5 comments

#203 - Add `fetch_path` to `is_session_blacklisted`

Pull Request - State: closed - Opened by speleo3 almost 3 years ago - 2 comments

#202 - get_sasa_relative: Add subsele argument

Pull Request - State: closed - Opened by speleo3 almost 3 years ago - 2 comments

#200 - MacOS menu bars inaccessible after initial launch

Issue - State: open - Opened by adreasnow almost 3 years ago - 4 comments

#199 - Fix guide selector bug

Pull Request - State: closed - Opened by speleo3 almost 3 years ago - 2 comments

#197 - Some include paths missing when building in RHEL 8.4

Issue - State: open - Opened by vascoosx almost 3 years ago - 1 comment
Labels: build-env-issue

#196 - get_area treatement of solvent && flag ignore

Issue - State: closed - Opened by brianosmith almost 3 years ago - 2 comments
Labels: pymolwiki

#195 - error: command 'gcc' failed with exit status 1

Issue - State: closed - Opened by masoudbio almost 3 years ago - 1 comment
Labels: build-env-issue

#193 - build failure on macOS 10.13 and below

Issue - State: closed - Opened by reneeotten about 3 years ago - 12 comments

#190 - Can not display GUI

Issue - State: open - Opened by freeenergylab about 3 years ago - 7 comments
Labels: third-party-packaging

#188 - "set valence,1 or off " invalid

Issue - State: closed - Opened by SynchronyML over 3 years ago - 2 comments

#184 - Cgo plane hidden after ray tracing

Issue - State: closed - Opened by smutao over 3 years ago - 2 comments
Labels: rendering-ray

#183 - request for reduced functionality apbs_gui for open source pymol

Issue - State: closed - Opened by jwhowarth over 3 years ago - 1 comment

#182 - AttributeError: module 'PyQt5.QtGui' has no attribute 'QMenu'

Issue - State: closed - Opened by biotech70 over 3 years ago - 8 comments

#181 - batch mode prints license etc and exits

Issue - State: open - Opened by nicman23 over 3 years ago - 1 comment

#180 - Add desktop and metadata files.

Pull Request - State: open - Opened by kevinsmia1939 over 3 years ago

#179 - How to compile with VTKM support?

Issue - State: open - Opened by giagitom over 3 years ago - 7 comments

#178 - PyMOL failed to start

Issue - State: open - Opened by fabioatuib over 3 years ago - 2 comments

#171 - set_bond line_width not working

Issue - State: open - Opened by igordub over 3 years ago - 1 comment

#158 - interior color transparency

Issue - State: open - Opened by giagitom over 3 years ago - 5 comments
Labels: rendering-ray

#156 - ReadMolFile-Error: bad coordinate

Issue - State: closed - Opened by janlittletwinstar over 3 years ago - 6 comments
Labels: incomplete, data-issue

#155 - VRML2 color export problem on cylinders making nucleotides borders

Issue - State: open - Opened by giagitom over 3 years ago - 2 comments
Labels: import-export

#139 - pymol homebrew install broken by latest glew homebrew update

Issue - State: closed - Opened by n-codina almost 4 years ago - 5 comments
Labels: build-env-issue, third-party-packaging