Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / schrodinger/pymol-open-source issues and pull requests
#303 - Unobserved residues incorrectly handled if cif_use_auth=0 (PyMOL 2.5.0 Open-Source)
Issue -
State: open - Opened by scjefin 11 months ago
#302 - get_area result does not correspond with SASA calculated using other libraries
Issue -
State: open - Opened by Glucksistemi 11 months ago
- 1 comment
#301 - Fix volume editor for Python 3.10
Pull Request -
State: closed - Opened by speleo3 11 months ago
- 2 comments
#300 - Bad Surface
Issue -
State: open - Opened by wlincong 11 months ago
- 6 comments
#299 - Error in background function
Issue -
State: closed - Opened by Lancespace 12 months ago
- 7 comments
#298 - Getting
Issue -
State: closed - Opened by Lancespace 12 months ago
#297 - Pymol2 python package and PyMOL GUI contain different rotamer libraries
Issue -
State: open - Opened by seb124 12 months ago
- 1 comment
#296 - MMTF loader: Use entityList for HETATM flag
Pull Request -
State: closed - Opened by speleo3 12 months ago
- 2 comments
#295 - Small molecule missing when loading mmtf file format
Issue -
State: closed - Opened by maabuu about 1 year ago
- 1 comment
#294 - Error saving PDB file
Issue -
State: open - Opened by 404-xianjin about 1 year ago
- 1 comment
#293 - The multiple PyMol version on Conda
Issue -
State: closed - Opened by shaoqx about 1 year ago
- 2 comments
#292 - Python function calls are blocking in PymolConsole but not in system shell
Issue -
State: closed - Opened by duerrsimon about 1 year ago
- 1 comment
#291 - vtk-m: support latest release
Issue -
State: open - Opened by reneeotten about 1 year ago
- 1 comment
#290 - Installation Issues in Google Colab
Issue -
State: closed - Opened by RafiBrent about 1 year ago
- 2 comments
#289 - Volume in different states ignore assigned color ramps
Issue -
State: closed - Opened by Finnem about 1 year ago
- 1 comment
#288 - Fix CI pipeline
Pull Request -
State: closed - Opened by speleo3 about 1 year ago
- 2 comments
#287 - setup.py ignoring library search environment variables.
Issue -
State: open - Opened by ErikPoppleton about 1 year ago
- 2 comments
#286 - Imported PLY file is scaled up 100-fold in cgo.py, why?
Issue -
State: closed - Opened by aszilagyi about 1 year ago
- 2 comments
#285 - Fix GIL for get_object_ttt and friends
Pull Request -
State: closed - Opened by speleo3 about 1 year ago
- 1 comment
#284 - Educational-Use-Only PyMOL Builds
Issue -
State: closed - Opened by brendenbarcellona about 1 year ago
- 1 comment
#283 - Receiving 2 errors during Installation
Issue -
State: closed - Opened by egmnb about 1 year ago
- 1 comment
#282 - PyMOL-Error: can't find 'pymol.povray'
Issue -
State: open - Opened by eusebiu over 1 year ago
- 1 comment
#281 - cmd.png cannot inherit the result of cmd.ray for image output
Issue -
State: closed - Opened by SynchronyML over 1 year ago
- 4 comments
#280 - Is this repository missing some release tags?
Issue -
State: closed - Opened by alerque over 1 year ago
- 3 comments
#279 - NotImplementedError: compile with --glut error!!!!
Issue -
State: open - Opened by biotech70 over 1 year ago
- 2 comments
#278 - Transforming vertices to match original pdb reference frame using `transform_selection`
Issue -
State: open - Opened by OliviaViessmann over 1 year ago
#277 - "ReadMOLFile-Error: bad atom count" on Pymol
Issue -
State: closed - Opened by terrilvallikalam over 1 year ago
- 2 comments
#276 - Avoid 3x2 grid for size=4
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
- 2 comments
#275 - Doubt about selection algebra
Issue -
State: closed - Opened by pslacerda over 1 year ago
- 10 comments
#274 - ImportError: symbol not found in flat namespace '_PlugIOManagerFreeAll'
Issue -
State: open - Opened by gauravdiwan89 over 1 year ago
- 1 comment
#273 - Stable release branch tags
Issue -
State: closed - Opened by mbanck over 1 year ago
- 4 comments
#272 - Unexpected behavior doing state-specific distance-based selection
Issue -
State: open - Opened by shaoqx over 1 year ago
#271 - Workaround shader disable encountered in combination with wayland
Pull Request -
State: closed - Opened by bisdan over 1 year ago
- 1 comment
#270 - The results of Pymol script are inconsistent with the Python script results.
Issue -
State: open - Opened by xiejuande over 1 year ago
#269 - Cartoon_trancparency command not working after using it on specific residue ranges
Issue -
State: closed - Opened by TheWizier over 1 year ago
- 2 comments
#268 - grid mode background color per grid cell
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
#267 - grid mode background color per grid cell
Issue -
State: closed - Opened by speleo3 over 1 year ago
- 3 comments
#266 - Not able to load partial pse using API
Issue -
State: closed - Opened by VonBoss over 1 year ago
- 4 comments
#265 - Electrostatic potentials at surface: what does ramp_new do exactly?
Issue -
State: open - Opened by eloyvallinaes over 1 year ago
- 1 comment
#264 - TypeError: setMaximum(self, int) when opening Plugin Lighting Settings
Issue -
State: closed - Opened by cgohlke over 1 year ago
- 2 comments
#263 - No module named pymol
Issue -
State: open - Opened by TianmingQu over 1 year ago
- 1 comment
Labels: third-party-packaging
#262 - Fix testSave_symmetry__mmtf for msgpack-cpp=4.1.2
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
- 1 comment
#261 - Fix crash when loading discrete object
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
- 1 comment
#260 - Fix build error in Pool.__del__
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
- 2 comments
#259 - New setting: cell_centered
Pull Request -
State: closed - Opened by speleo3 over 1 year ago
- 2 comments
#258 - Support centered cell rendering
Issue -
State: closed - Opened by speleo3 over 1 year ago
#257 - Automatically update selection based on frame
Issue -
State: closed - Opened by cyril-schroeder-ox almost 2 years ago
- 2 comments
#256 - Undo has been disabled. Reason: Object is too large
Issue -
State: closed - Opened by ValZapod almost 2 years ago
- 1 comment
#255 - tried to multi-delete selections, received traceback
Issue -
State: closed - Opened by carter-canedy almost 2 years ago
- 1 comment
#254 - pymol window exits when maximining its window
Issue -
State: open - Opened by lyw8120 almost 2 years ago
#253 - PyMOL traceback error when building residues
Issue -
State: closed - Opened by mtelia almost 2 years ago
- 1 comment
#252 - Error about building model
Issue -
State: closed - Opened by hexa-tert almost 2 years ago
- 3 comments
#251 - set_name: Selector-Error: Invalid selection name
Issue -
State: closed - Opened by sbwiecko almost 2 years ago
- 3 comments
#250 - Python 3.9 support
Issue -
State: closed - Opened by shaoqx almost 2 years ago
- 6 comments
#249 - ModuleNotFoundError: No module named 'requests'
Issue -
State: closed - Opened by MarcAmil30 almost 2 years ago
- 2 comments
#248 - PyMOL is not responsive when performing task in background
Issue -
State: open - Opened by kexul almost 2 years ago
#246 - MESA loader - pymol is looking for graphics files in the wrong place on Ubuntu 22.04
Issue -
State: open - Opened by dc623 almost 2 years ago
- 2 comments
#245 - Import Error (chempy): conflict with chempy from pip
Issue -
State: open - Opened by jfmoulin almost 2 years ago
- 2 comments
#244 - Compatibility of sessions between PyMOL (<=) 2.3 and PyMOL 2.5
Issue -
State: closed - Opened by jr-marchand almost 2 years ago
- 1 comment
#243 - Modify torsion angles of multiple nucleotides
Issue -
State: open - Opened by anilkurkcu almost 2 years ago
#242 - Problem encountered in install pymol
Issue -
State: closed - Opened by sippmilkwolf almost 2 years ago
#241 - Issue when loading a multimodel pdb file using discrete=1
Issue -
State: closed - Opened by giagitom almost 2 years ago
- 1 comment
#240 - When exporting a gif movie, the colors become weird.
Issue -
State: open - Opened by AustinApple about 2 years ago
#239 - File Size Limit for DCD Plugin
Issue -
State: closed - Opened by christos-efthymiou about 2 years ago
- 2 comments
#238 - Failed to download resource "pymol_bottle_manifest"
Issue -
State: closed - Opened by structuralcbh about 2 years ago
- 6 comments
Labels: third-party-packaging
#237 - pymol: Failed to download resource "pymol--Pmw"
Issue -
State: open - Opened by Xiangzh-ang about 2 years ago
- 2 comments
Labels: third-party-packaging
#236 - correct plugin install behavior
Pull Request -
State: closed - Opened by songyongshun about 2 years ago
- 1 comment
#235 - Use XDG_CONFIG_HOME for pymolrc
Pull Request -
State: closed - Opened by danpf about 2 years ago
- 1 comment
#234 - pymol crashes when downloading pdb files
Issue -
State: closed - Opened by karolinluger about 2 years ago
- 1 comment
#233 - Fix crash in find_molfile_plugin
Pull Request -
State: closed - Opened by speleo3 about 2 years ago
- 1 comment
#232 - ImportError: libGL.so.1: cannot open shared object file: No such file or directory
Issue -
State: open - Opened by MilesYyh about 2 years ago
- 1 comment
#231 - PyMOL after compilation on macOS 10.13.6
Issue -
State: open - Opened by houdini69 over 2 years ago
#230 - Compilation failed macOS
Issue -
State: closed - Opened by houdini69 over 2 years ago
- 2 comments
#229 - Pymol for mac not running python scripts
Issue -
State: open - Opened by Adele-Williamson over 2 years ago
- 1 comment
#228 - Fix for missing scene panel dialog in Tk GUI
Pull Request -
State: closed - Opened by KrisJanssen over 2 years ago
- 2 comments
#227 - iterate: Add explicit_valence and explicit_degree
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 2 comments
#226 - Fix fallback MMTF loader
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 1 comment
#225 - Fallback MMTF loader support broken
Issue -
State: closed - Opened by speleo3 over 2 years ago
#224 - pymol.cmd.png(...quiet=1, ray=0) displays "Ray: render time..." message
Issue -
State: closed - Opened by jonathanking over 2 years ago
- 1 comment
Labels: cannot-reproduce
#223 - strange error that app/org.pymol.PyMOL/master is not installed
Issue -
State: open - Opened by taraspinosa over 2 years ago
- 1 comment
Labels: third-party-packaging
#222 - No pymol._cmd file available.
Issue -
State: closed - Opened by smiles724 over 2 years ago
- 2 comments
#221 - Mutagenesis Wizzard stores hydrogen AtomName numbering in the wrong order, during PDB export.
Issue -
State: open - Opened by pguillem over 2 years ago
#220 - Coordinates close to zero break `cgo.CONE`
Issue -
State: closed - Opened by kmdalton over 2 years ago
Labels: good first issue
#219 - No module named 'pymol.cmd'
Issue -
State: open - Opened by biotech70 over 2 years ago
- 6 comments
#218 - Create selection by state
Issue -
State: open - Opened by AlessioDelConte over 2 years ago
- 1 comment
#217 - Need to port from distutils to setuptools
Issue -
State: open - Opened by adamjstewart over 2 years ago
- 1 comment
#216 - How to dock the two different windows in the PyMol interface (GUI)?
Issue -
State: open - Opened by urban233 over 2 years ago
#215 - Error fetching pdb id 7BV2
Issue -
State: open - Opened by giagitom over 2 years ago
- 5 comments
#214 - Allow building with latst vtk-m release (v1.7)
Pull Request -
State: closed - Opened by reneeotten over 2 years ago
- 1 comment
#213 - More consistent cmd.load_model discrete behavior
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 1 comment
#212 - cmd.load_model discrete argument unexpected behavior
Issue -
State: closed - Opened by speleo3 over 2 years ago
- 1 comment
#211 - FlatPak version needs network permissions for Get PDB.. menu option
Issue -
State: closed - Opened by dyelar over 2 years ago
- 2 comments
Labels: third-party-packaging
#210 - is it possible to have this packaged for homebrew?
Issue -
State: open - Opened by jlawgit over 2 years ago
- 1 comment
Labels: third-party-packaging
#209 - VRML export of distance measurements broken
Issue -
State: closed - Opened by giagitom over 2 years ago
- 8 comments
Labels: import-export
#208 - How to use geomery parameter with 'attach' command?
Issue -
State: open - Opened by Glucksistemi over 2 years ago
- 2 comments
Labels: pymolwiki
#204 - Closing pymol which started from python console crashes python
Issue -
State: open - Opened by stefdoerr over 2 years ago
- 5 comments
#203 - Add `fetch_path` to `is_session_blacklisted`
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 2 comments
#202 - get_sasa_relative: Add subsele argument
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 2 comments
#200 - MacOS menu bars inaccessible after initial launch
Issue -
State: open - Opened by adreasnow over 2 years ago
- 4 comments
#199 - Fix guide selector bug
Pull Request -
State: closed - Opened by speleo3 over 2 years ago
- 2 comments