Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / schrodinger/pymol-open-source issues and pull requests

#301 - Fix volume editor for Python 3.10

Pull Request - State: closed - Opened by speleo3 11 months ago - 2 comments

#300 - Bad Surface

Issue - State: open - Opened by wlincong 11 months ago - 6 comments

#299 - Error in background function

Issue - State: closed - Opened by Lancespace 12 months ago - 7 comments

#298 - Getting

Issue - State: closed - Opened by Lancespace 12 months ago

#297 - Pymol2 python package and PyMOL GUI contain different rotamer libraries

Issue - State: open - Opened by seb124 12 months ago - 1 comment

#296 - MMTF loader: Use entityList for HETATM flag

Pull Request - State: closed - Opened by speleo3 12 months ago - 2 comments

#295 - Small molecule missing when loading mmtf file format

Issue - State: closed - Opened by maabuu about 1 year ago - 1 comment

#294 - Error saving PDB file

Issue - State: open - Opened by 404-xianjin about 1 year ago - 1 comment

#293 - The multiple PyMol version on Conda

Issue - State: closed - Opened by shaoqx about 1 year ago - 2 comments

#292 - Python function calls are blocking in PymolConsole but not in system shell

Issue - State: closed - Opened by duerrsimon about 1 year ago - 1 comment

#291 - vtk-m: support latest release

Issue - State: open - Opened by reneeotten about 1 year ago - 1 comment

#290 - Installation Issues in Google Colab

Issue - State: closed - Opened by RafiBrent about 1 year ago - 2 comments

#289 - Volume in different states ignore assigned color ramps

Issue - State: closed - Opened by Finnem about 1 year ago - 1 comment

#288 - Fix CI pipeline

Pull Request - State: closed - Opened by speleo3 about 1 year ago - 2 comments

#287 - setup.py ignoring library search environment variables.

Issue - State: open - Opened by ErikPoppleton about 1 year ago - 2 comments

#286 - Imported PLY file is scaled up 100-fold in cgo.py, why?

Issue - State: closed - Opened by aszilagyi about 1 year ago - 2 comments

#285 - Fix GIL for get_object_ttt and friends

Pull Request - State: closed - Opened by speleo3 about 1 year ago - 1 comment

#284 - Educational-Use-Only PyMOL Builds

Issue - State: closed - Opened by brendenbarcellona about 1 year ago - 1 comment

#283 - Receiving 2 errors during Installation

Issue - State: closed - Opened by egmnb about 1 year ago - 1 comment

#282 - PyMOL-Error: can't find 'pymol.povray'

Issue - State: open - Opened by eusebiu over 1 year ago - 1 comment

#281 - cmd.png cannot inherit the result of cmd.ray for image output

Issue - State: closed - Opened by SynchronyML over 1 year ago - 4 comments

#280 - Is this repository missing some release tags?

Issue - State: closed - Opened by alerque over 1 year ago - 3 comments

#279 - NotImplementedError: compile with --glut error!!!!

Issue - State: open - Opened by biotech70 over 1 year ago - 2 comments

#277 - "ReadMOLFile-Error: bad atom count" on Pymol

Issue - State: closed - Opened by terrilvallikalam over 1 year ago - 2 comments

#276 - Avoid 3x2 grid for size=4

Pull Request - State: closed - Opened by speleo3 over 1 year ago - 2 comments

#275 - Doubt about selection algebra

Issue - State: closed - Opened by pslacerda over 1 year ago - 10 comments

#273 - Stable release branch tags

Issue - State: closed - Opened by mbanck over 1 year ago - 4 comments

#271 - Workaround shader disable encountered in combination with wayland

Pull Request - State: closed - Opened by bisdan over 1 year ago - 1 comment

#268 - grid mode background color per grid cell

Pull Request - State: closed - Opened by speleo3 over 1 year ago

#267 - grid mode background color per grid cell

Issue - State: closed - Opened by speleo3 over 1 year ago - 3 comments

#266 - Not able to load partial pse using API

Issue - State: closed - Opened by VonBoss over 1 year ago - 4 comments

#265 - Electrostatic potentials at surface: what does ramp_new do exactly?

Issue - State: open - Opened by eloyvallinaes over 1 year ago - 1 comment

#264 - TypeError: setMaximum(self, int) when opening Plugin Lighting Settings

Issue - State: closed - Opened by cgohlke over 1 year ago - 2 comments

#263 - No module named pymol

Issue - State: open - Opened by TianmingQu over 1 year ago - 1 comment
Labels: third-party-packaging

#262 - Fix testSave_symmetry__mmtf for msgpack-cpp=4.1.2

Pull Request - State: closed - Opened by speleo3 over 1 year ago - 1 comment

#261 - Fix crash when loading discrete object

Pull Request - State: closed - Opened by speleo3 over 1 year ago - 1 comment

#260 - Fix build error in Pool.__del__

Pull Request - State: closed - Opened by speleo3 over 1 year ago - 2 comments

#259 - New setting: cell_centered

Pull Request - State: closed - Opened by speleo3 over 1 year ago - 2 comments

#258 - Support centered cell rendering

Issue - State: closed - Opened by speleo3 over 1 year ago

#257 - Automatically update selection based on frame

Issue - State: closed - Opened by cyril-schroeder-ox almost 2 years ago - 2 comments

#256 - Undo has been disabled. Reason: Object is too large

Issue - State: closed - Opened by ValZapod almost 2 years ago - 1 comment

#255 - tried to multi-delete selections, received traceback

Issue - State: closed - Opened by carter-canedy almost 2 years ago - 1 comment

#254 - pymol window exits when maximining its window

Issue - State: open - Opened by lyw8120 almost 2 years ago

#253 - PyMOL traceback error when building residues

Issue - State: closed - Opened by mtelia almost 2 years ago - 1 comment

#252 - Error about building model

Issue - State: closed - Opened by hexa-tert almost 2 years ago - 3 comments

#251 - set_name: Selector-Error: Invalid selection name

Issue - State: closed - Opened by sbwiecko almost 2 years ago - 3 comments

#250 - Python 3.9 support

Issue - State: closed - Opened by shaoqx almost 2 years ago - 6 comments

#249 - ModuleNotFoundError: No module named 'requests'

Issue - State: closed - Opened by MarcAmil30 almost 2 years ago - 2 comments

#248 - PyMOL is not responsive when performing task in background

Issue - State: open - Opened by kexul almost 2 years ago

#245 - Import Error (chempy): conflict with chempy from pip

Issue - State: open - Opened by jfmoulin almost 2 years ago - 2 comments

#244 - Compatibility of sessions between PyMOL (<=) 2.3 and PyMOL 2.5

Issue - State: closed - Opened by jr-marchand almost 2 years ago - 1 comment

#243 - Modify torsion angles of multiple nucleotides

Issue - State: open - Opened by anilkurkcu almost 2 years ago

#242 - Problem encountered in install pymol

Issue - State: closed - Opened by sippmilkwolf almost 2 years ago

#241 - Issue when loading a multimodel pdb file using discrete=1

Issue - State: closed - Opened by giagitom almost 2 years ago - 1 comment

#240 - When exporting a gif movie, the colors become weird.

Issue - State: open - Opened by AustinApple about 2 years ago

#239 - File Size Limit for DCD Plugin

Issue - State: closed - Opened by christos-efthymiou about 2 years ago - 2 comments

#238 - Failed to download resource "pymol_bottle_manifest"

Issue - State: closed - Opened by structuralcbh about 2 years ago - 6 comments
Labels: third-party-packaging

#237 - pymol: Failed to download resource "pymol--Pmw"

Issue - State: open - Opened by Xiangzh-ang about 2 years ago - 2 comments
Labels: third-party-packaging

#236 - correct plugin install behavior

Pull Request - State: closed - Opened by songyongshun about 2 years ago - 1 comment

#235 - Use XDG_CONFIG_HOME for pymolrc

Pull Request - State: closed - Opened by danpf about 2 years ago - 1 comment

#234 - pymol crashes when downloading pdb files

Issue - State: closed - Opened by karolinluger about 2 years ago - 1 comment

#233 - Fix crash in find_molfile_plugin

Pull Request - State: closed - Opened by speleo3 about 2 years ago - 1 comment

#231 - PyMOL after compilation on macOS 10.13.6

Issue - State: open - Opened by houdini69 over 2 years ago

#230 - Compilation failed macOS

Issue - State: closed - Opened by houdini69 over 2 years ago - 2 comments

#229 - Pymol for mac not running python scripts

Issue - State: open - Opened by Adele-Williamson over 2 years ago - 1 comment

#228 - Fix for missing scene panel dialog in Tk GUI

Pull Request - State: closed - Opened by KrisJanssen over 2 years ago - 2 comments

#227 - iterate: Add explicit_valence and explicit_degree

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 2 comments

#226 - Fix fallback MMTF loader

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 1 comment

#225 - Fallback MMTF loader support broken

Issue - State: closed - Opened by speleo3 over 2 years ago

#224 - pymol.cmd.png(...quiet=1, ray=0) displays "Ray: render time..." message

Issue - State: closed - Opened by jonathanking over 2 years ago - 1 comment
Labels: cannot-reproduce

#223 - strange error that app/org.pymol.PyMOL/master is not installed

Issue - State: open - Opened by taraspinosa over 2 years ago - 1 comment
Labels: third-party-packaging

#222 - No pymol._cmd file available.

Issue - State: closed - Opened by smiles724 over 2 years ago - 2 comments

#220 - Coordinates close to zero break `cgo.CONE`

Issue - State: closed - Opened by kmdalton over 2 years ago
Labels: good first issue

#219 - No module named 'pymol.cmd'

Issue - State: open - Opened by biotech70 over 2 years ago - 6 comments

#218 - Create selection by state

Issue - State: open - Opened by AlessioDelConte over 2 years ago - 1 comment

#217 - Need to port from distutils to setuptools

Issue - State: open - Opened by adamjstewart over 2 years ago - 1 comment

#215 - Error fetching pdb id 7BV2

Issue - State: open - Opened by giagitom over 2 years ago - 5 comments

#214 - Allow building with latst vtk-m release (v1.7)

Pull Request - State: closed - Opened by reneeotten over 2 years ago - 1 comment

#213 - More consistent cmd.load_model discrete behavior

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 1 comment

#212 - cmd.load_model discrete argument unexpected behavior

Issue - State: closed - Opened by speleo3 over 2 years ago - 1 comment

#211 - FlatPak version needs network permissions for Get PDB.. menu option

Issue - State: closed - Opened by dyelar over 2 years ago - 2 comments
Labels: third-party-packaging

#210 - is it possible to have this packaged for homebrew?

Issue - State: open - Opened by jlawgit over 2 years ago - 1 comment
Labels: third-party-packaging

#209 - VRML export of distance measurements broken

Issue - State: closed - Opened by giagitom over 2 years ago - 8 comments
Labels: import-export

#208 - How to use geomery parameter with 'attach' command?

Issue - State: open - Opened by Glucksistemi over 2 years ago - 2 comments
Labels: pymolwiki

#204 - Closing pymol which started from python console crashes python

Issue - State: open - Opened by stefdoerr over 2 years ago - 5 comments

#203 - Add `fetch_path` to `is_session_blacklisted`

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 2 comments

#202 - get_sasa_relative: Add subsele argument

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 2 comments

#200 - MacOS menu bars inaccessible after initial launch

Issue - State: open - Opened by adreasnow over 2 years ago - 4 comments

#199 - Fix guide selector bug

Pull Request - State: closed - Opened by speleo3 over 2 years ago - 2 comments