Ecosyste.ms: Issues

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GitHub / sbslee/pypgx issues and pull requests

#36 - Updating phenotype data for several genes

Issue - State: closed - Opened by sbslee almost 3 years ago - 9 comments
Labels: enhancement

#35 - Regarding multiple alleles on the same strand

Issue - State: closed - Opened by NTNguyen13 almost 3 years ago - 4 comments

#34 - Speeding up VCF loading for large files

Issue - State: closed - Opened by sbslee almost 3 years ago - 6 comments
Labels: enhancement

#33 - 0.9.0 dev

Pull Request - State: closed - Opened by sbslee almost 3 years ago

#32 - Running Pypgx with Phased variants and Predicted CNV

Issue - State: closed - Opened by NTNguyen13 almost 3 years ago - 6 comments
Labels: enhancement

#31 - Fix minor bug in Arg parsers

Pull Request - State: closed - Opened by NTNguyen13 about 3 years ago - 1 comment

#30 - Could not load index for bam list having for more than 1018 lines

Issue - State: closed - Opened by NTNguyen13 about 3 years ago - 2 comments

#29 - 0.8.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#28 - 0.7.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#27 - 0.6.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#26 - Add sphinx.ext.linkcode extension

Issue - State: closed - Opened by sbslee about 3 years ago
Labels: documentation

#25 - Add sphinx-issues extension

Issue - State: closed - Opened by sbslee about 3 years ago
Labels: documentation

#24 - 0.5.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#23 - 0.4.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#22 - Future Plans

Issue - State: closed - Opened by kokyriakidis about 3 years ago - 3 comments

#21 - pypgx on anaconda

Issue - State: closed - Opened by kokyriakidis about 3 years ago - 1 comment

#20 - 0.3.0 dev

Pull Request - State: closed - Opened by sbslee over 3 years ago

#19 - Change 'calculate-read-depth' command to accept single BAM file as input

Issue - State: closed - Opened by sbslee over 3 years ago - 1 comment
Labels: enhancement

#18 - Phenotype - CYP2C9, diplotype *2/*3

Issue - State: closed - Opened by ankita86 almost 4 years ago - 2 comments

#17 - Hot fix

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#16 - Update bam2vcf2

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#15 - Update compgt

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#14 - Update the doc

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#13 - Clean up

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#12 - Most recent stargazer package

Issue - State: closed - Opened by jvanalstine almost 4 years ago - 1 comment

#11 - Remove vcfgo

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#10 - Remove dependency to the vcfgo package

Issue - State: closed - Opened by sbslee almost 4 years ago

#9 - change nudt15 to metabolizer phenotypes

Pull Request - State: closed - Opened by brettva almost 4 years ago - 2 comments

#8 - Phenotyper dev

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#7 - updated dpyd,tpmt, ugt1a1 to enzyme pheontypes

Pull Request - State: closed - Opened by brettva almost 4 years ago

#6 - Bam2vcf2 dev

Pull Request - State: closed - Opened by sbslee almost 4 years ago

#4 - Error in bam2gdf

Issue - State: closed - Opened by kokyriakidis over 4 years ago - 2 comments
Labels: bug

#3 - Update changes to BAM2SDF so that it allows multiple regions as input

Pull Request - State: closed - Opened by NTNguyen13 over 4 years ago - 3 comments

#2 - Fix new line character causing error in script

Pull Request - State: closed - Opened by kokyriakidis over 4 years ago - 1 comment

#1 - Add test file

Pull Request - State: closed - Opened by sbslee over 4 years ago