sbslee/fuc issues and pull requests

#74 - [General] `sorted_samples` function definition doesn't allow passing through count named argument or keyword arguments to `matrix_waterfall`

Issue - State: closed - Opened by lottpaul about 2 months ago - 2 comments
Labels: enhancement

#73 - [MAF] UnboundLocalError: local variable 'columns' referenced before assignment

Issue - State: closed - Opened by Bo-UT 4 months ago - 2 comments

#72 - 0.38.0 dev

Pull Request - State: closed - Opened by sbslee 6 months ago

#71 - [General] `common.plot_cytobands` and matplotlib 3.9.0 deprecation

Issue - State: closed - Opened by theAeon 6 months ago - 1 comment
Labels: bug

#70 - Tutorial to read in 10 vcfs and calculate allele frequency?

Issue - State: open - Opened by dbolser 9 months ago

#69 - 0.37.0 dev

Pull Request - State: closed - Opened by sbslee about 1 year ago

#68 - [MAF] Update Ensembl VEP consequences mapping

Issue - State: closed - Opened by brianryu87 about 1 year ago - 3 comments
Labels: enhancement

#67 - [MAF] Variant color coding mismatch

Issue - State: closed - Opened by tilschaef over 1 year ago - 3 comments
Labels: bug

#66 - 0.36.0 dev

Pull Request - State: closed - Opened by sbslee over 2 years ago

#65 - 0.35.0 dev

Pull Request - State: closed - Opened by sbslee over 2 years ago

#64 - 0.34.0 dev

Pull Request - State: closed - Opened by sbslee over 2 years ago

#63 - [VCF] Question on usage

Issue - State: closed - Opened by ironb25 over 2 years ago - 7 comments
Labels: enhancement

#62 - [VCF] Issue reading vcf from mutect2, strelka2

Issue - State: closed - Opened by ironb25 over 2 years ago - 2 comments

#61 - [MAF/VCF] `pymaf.MafFrame.from_vcf` assumes CSQ is the first field in the INFO record

Issue - State: closed - Opened by lbeltrame over 2 years ago - 3 comments
Labels: enhancement

#60 - 0.33.1 dev

Pull Request - State: closed - Opened by sbslee over 2 years ago

#59 - 0.32.0 dev

Pull Request - State: closed - Opened by sbslee over 2 years ago

#58 - [MAF] maf-oncoplt Index Error

Issue - State: closed - Opened by dmontielg over 2 years ago - 3 comments

#57 - [VCF] Update `pyvcf.VcfFrame.filter_sampnum` to be more robust

Issue - State: closed - Opened by sbslee over 2 years ago - 1 comment

#56 - 0.31.0 dev

Pull Request - State: closed - Opened by sbslee almost 3 years ago

#55 - [General] Error while importing pyvcf

Issue - State: closed - Opened by evabalini almost 3 years ago - 2 comments

#54 - [VCF] Add function to remove samples with high missingness

Issue - State: closed - Opened by sbslee almost 3 years ago
Labels: enhancement

#53 - [VCF] Add function to compute AC/AN/AF in the INFO column

Issue - State: closed - Opened by sbslee almost 3 years ago - 1 comment
Labels: enhancement

#52 - [General] Error during installation fuc via conda

Issue - State: closed - Opened by emoranska almost 3 years ago - 2 comments

#51 - 0.30.0 dev

Pull Request - State: closed - Opened by sbslee almost 3 years ago

#50 - 0.29.0 dev

Pull Request - State: closed - Opened by sbslee almost 3 years ago

#49 - 0.28.0 dev

Pull Request - State: closed - Opened by sbslee almost 3 years ago

#48 - [VCF] Add function to create a scatter plot of allele frequency for two datasets

Issue - State: closed - Opened by sbslee about 3 years ago - 1 comment
Labels: enhancement

#47 - 0.27.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#46 - [VCF] How to remove all rows with the same variant in VCF file using `pyvcf`

Issue - State: closed - Opened by emoranska about 3 years ago - 10 comments

#45 - 0.26.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#44 - 0.25.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#43 - 0.24.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago

#42 - 0.23.0 dev

Pull Request - State: closed - Opened by sbslee about 3 years ago