Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / sbgn/libsbgn issues and pull requests

#65 - Improve Usability with SBML models

Issue - State: open - Opened by shoepfl almost 2 years ago - 4 comments

#64 - Bump xalan from 2.7.0 to 2.7.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#63 - Bump xercesImpl from 2.11.0 to 2.12.2

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#62 - Use `emptyset` rather than `source and sink`

Issue - State: open - Opened by fbergmann over 3 years ago

#61 - Bump junit from 4.12 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#60 - Bump xercesImpl from 2.11.0 to 2.12.0

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#59 - Encoding issue

Pull Request - State: closed - Opened by piotr-gawron over 4 years ago - 4 comments

#58 - Saxon upgrade

Pull Request - State: closed - Opened by piotr-gawron over 4 years ago - 5 comments

#57 - Conflicting library version in maven dependency.

Issue - State: open - Opened by piotr-gawron almost 5 years ago

#56 - Switch to Github Packages

Issue - State: open - Opened by cannin about 5 years ago
Labels: enhancement

#55 - Extension: added new Equivalence operator from PD L1V2.0 spec

Pull Request - State: closed - Opened by tczauderna over 5 years ago - 2 comments

#54 - Incorrect SBGN file format following writing the render information

Issue - State: open - Opened by ibalaur over 5 years ago - 5 comments

#52 - Suggestion: Font style property to be exposed via the RenderUtil class

Issue - State: closed - Opened by ibalaur over 5 years ago - 3 comments
Labels: enhancement

#48 - Added exception handling when getting JAXB context

Pull Request - State: closed - Opened by tczauderna over 5 years ago

#47 - Proposal to allow double colon (i.e. "::") to be used inside a glyph id

Issue - State: closed - Opened by ibalaur over 5 years ago - 4 comments

#46 - maven build not working on some systems

Issue - State: open - Opened by fbergmann over 5 years ago - 1 comment

#45 - port ant script to maven

Issue - State: closed - Opened by fbergmann over 5 years ago - 3 comments
Labels: help wanted

#44 - utility classes for creating / accessing render elements

Issue - State: open - Opened by fbergmann almost 6 years ago
Labels: Milestone 3

#43 - clone / notes examples

Issue - State: open - Opened by fbergmann almost 6 years ago
Labels: Milestone 3

#42 - Schema not found

Issue - State: open - Opened by yun-vis over 6 years ago - 1 comment

#41 - Compile problem: error: Source option 1.5 is no longer supported. Use 1.6 or later

Issue - State: closed - Opened by ibalaur about 7 years ago - 1 comment

#40 - Update annotation.sbgn

Pull Request - State: closed - Opened by haleyyew over 7 years ago - 2 comments

#39 - More flexible parse functions with support for InputStreams

Issue - State: closed - Opened by draeger about 8 years ago - 1 comment
Labels: help wanted

#38 - Ant tests failing

Issue - State: closed - Opened by matthiaskoenig about 8 years ago - 3 comments
Labels: Milestone 3

#37 - Specification documentation & javadocs for v0.3

Pull Request - State: closed - Opened by matthiaskoenig about 8 years ago

#36 - Updated documentation & build instructions

Pull Request - State: closed - Opened by matthiaskoenig about 8 years ago

#35 - v0.3-SNAPSHOT

Issue - State: closed - Opened by matthiaskoenig about 8 years ago - 3 comments

#34 - Create specification docs for v0.3-SNAPSHOT

Issue - State: closed - Opened by matthiaskoenig about 8 years ago - 1 comment

#33 - Create javadocs for v0.2 and v0.3-SNAPSHOT & host somewhere

Issue - State: closed - Opened by matthiaskoenig about 8 years ago - 1 comment

#32 - Develop

Pull Request - State: closed - Opened by matthiaskoenig about 8 years ago

#31 - Add license

Issue - State: closed - Opened by matthiaskoenig about 8 years ago - 2 comments

#30 - Serializations not created in C++ bindings

Issue - State: closed - Opened by cannin about 12 years ago - 5 comments
Labels: sourceforge, auto-migrated, Milestone 2, Library

#29 - phenotype / observable class for ER maps

Issue - State: closed - Opened by cannin about 13 years ago - 1 comment
Labels: Markup Language, sourceforge, auto-migrated, Milestone 2

#28 - Custom Annotations warrant higher priority

Issue - State: closed - Opened by cannin over 13 years ago - 1 comment
Labels: Markup Language, sourceforge, auto-migrated, Milestone 2

#27 - drawing order of overlapping compartments in PD

Issue - State: closed - Opened by cannin over 13 years ago - 6 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 2

#26 - enum with string constants

Issue - State: closed - Opened by cannin over 13 years ago - 2 comments
Labels: sourceforge, auto-migrated, Milestone 2, Library

#25 - ids on arcs?

Issue - State: closed - Opened by cannin over 13 years ago - 6 comments
Labels: sourceforge, auto-migrated, Milestone 2

#24 - STAT1 alpha get's converted to STAT1α

Issue - State: closed - Opened by cannin almost 14 years ago - 6 comments
Labels: sourceforge, auto-migrated, Milestone 2, Library

#23 - Compartment containment

Issue - State: closed - Opened by cannin almost 14 years ago - 2 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 2

#22 - Unit of information label = prefix + value

Issue - State: open - Opened by cannin about 14 years ago - 2 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 3

#21 - Proposal for text styles

Issue - State: open - Opened by cannin about 14 years ago - 2 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 3

#20 - definition of starting point / end point for arcs

Issue - State: closed - Opened by cannin about 14 years ago - 3 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#19 - mismatch betw. def. of bounding box in schema and test files

Issue - State: closed - Opened by cannin about 14 years ago - 3 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#18 - Recommend a mime type

Issue - State: open - Opened by cannin about 14 years ago - 1 comment
Labels: Markup Language, sourceforge, auto-migrated, Milestone 3

#17 - Complex Glyphs depicting elements on the inside

Issue - State: closed - Opened by cannin about 14 years ago - 3 comments
Labels: sourceforge, auto-migrated, Milestone 1

#16 - Bug in compartments.xml or how to do associations

Issue - State: closed - Opened by cannin about 14 years ago - 5 comments
Labels: Markup Language, sourceforge, auto-migrated

#15 - Proposal for Label bounds

Issue - State: closed - Opened by cannin about 14 years ago - 4 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#14 - Second notation for state variables

Issue - State: closed - Opened by cannin about 14 years ago - 2 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#13 - Implement submaps

Issue - State: open - Opened by cannin about 14 years ago - 10 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 3

#12 - Port position information duplicated

Issue - State: closed - Opened by cannin over 14 years ago - 4 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 2

#11 - Submap is missing

Issue - State: closed - Opened by cannin over 14 years ago - 2 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#10 - All logical operators are missing

Issue - State: closed - Opened by cannin over 14 years ago - 2 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#9 - State variables: 3rd notation not supported

Issue - State: open - Opened by cannin over 14 years ago - 4 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 3

#8 - Underdefined glyphs

Issue - State: open - Opened by cannin over 14 years ago - 2 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 3

#7 - Discussion xsd Process Description

Issue - State: closed - Opened by cannin over 14 years ago - 3 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#6 - The value "perturbating agent" should be "perturbing agent".

Issue - State: closed - Opened by cannin over 14 years ago - 3 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#5 - Missing glyphs for Process Description

Issue - State: closed - Opened by cannin over 14 years ago - 3 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#4 - Explicit bounding box for (some/all?) labels

Issue - State: closed - Opened by cannin over 14 years ago - 5 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#3 - Label of clone marker

Issue - State: closed - Opened by cannin over 14 years ago - 5 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#2 - Curved arcs

Issue - State: closed - Opened by cannin over 14 years ago - 9 comments
Labels: Markup Language, sourceforge, auto-migrated, Milestone 1

#1 - Size of clone marker

Issue - State: open - Opened by cannin over 14 years ago - 1 comment
Labels: Markup Language, sourceforge, auto-migrated, Milestone 3