Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / satijalab/seurat-data issues and pull requests

#94 - publish on CRAN?

Issue - State: open - Opened by nick-youngblut 8 months ago

#93 - Update SeuratData to be compatible with Rv4.4

Issue - State: closed - Opened by emily-grantham 8 months ago - 1 comment

#89 - How to install old release of SeuratData

Issue - State: open - Opened by LinZhang1004 9 months ago - 5 comments

#88 - Error converting Seurat Assay5 to Assay

Issue - State: closed - Opened by alexvpickering 9 months ago - 1 comment

#85 - Error installing Seurat Data

Issue - State: closed - Opened by keenhl 11 months ago - 2 comments

#84 - hcabm40k.SeuratData QC interpretation

Issue - State: closed - Opened by rocanja 12 months ago - 1 comment

#83 - Problems with Python when Seurat --> AnnData

Issue - State: open - Opened by nsdelablancac about 1 year ago

#82 - Data set ‘pbmcref’ not found when run LoadData("pbmcref")

Issue - State: open - Opened by MWRR about 1 year ago - 4 comments

#79 - there is no package called 'lungref.SeuratData' but present in AvailableData

Issue - State: closed - Opened by bellenger-l about 1 year ago - 1 comment

#78 - Error: Failed to install 'Seurat' from GitHub

Issue - State: open - Opened by biotech70 over 1 year ago

#77 - Dataset not found with LoadData but it is installed

Issue - State: open - Opened by MartaBenegas over 1 year ago - 6 comments

#75 - Seurat5 Updates

Pull Request - State: closed - Opened by Gesmira over 1 year ago

#74 - ifnb SeuratObject version clash

Issue - State: open - Opened by muskang123 over 1 year ago

#73 - Distributing SeuratData as .h5seurat file

Issue - State: open - Opened by yi6kim over 1 year ago

#72 - version 5 Seu object

Issue - State: open - Opened by cathalgking over 1 year ago

#71 - Download automatically times out after 60 seconds

Issue - State: open - Opened by markziemann over 1 year ago - 1 comment

#70 - InstallData("pbmc3k") error

Issue - State: closed - Opened by partrita over 1 year ago - 11 comments

#69 - No dataset pancreasref found...

Issue - State: closed - Opened by Zockimonster over 1 year ago - 1 comment

#68 - bmcite: inconsistency of the number of cells

Issue - State: open - Opened by jcyang34 over 1 year ago

#67 - Help to understand spatial transcriptomic data

Issue - State: open - Opened by Lkz30 almost 2 years ago

#66 - RunUMAP does not function when using a Neighbor object as input in umap-learn mode

Issue - State: closed - Opened by JohnMCMa almost 2 years ago - 1 comment

#65 - Error in FindSpatiallyVariableFeatures

Issue - State: open - Opened by BenjaminDEMAILLE almost 2 years ago

#64 - Access raw counts for pancreasref.SeuratData

Issue - State: open - Opened by ShanSabri about 2 years ago - 1 comment

#63 - Issue trying to access pancreasref when correctly installed

Issue - State: closed - Opened by ShanSabri about 2 years ago - 1 comment

#62 - Issues installing SeuratData info

Issue - State: open - Opened by NeuroBuzz over 2 years ago - 2 comments

#61 - bmcite progenitor cell types

Issue - State: open - Opened by dy-lin over 2 years ago - 1 comment

#60 - Error installing "stxBrain" using InstallData()

Issue - State: open - Opened by andrewgriggs260 over 2 years ago - 1 comment

#59 - Question about the data itself

Issue - State: open - Opened by Tinocapo over 2 years ago

#58 - Problem InstallData("bmcite.SeuratData")

Issue - State: open - Opened by indoum over 2 years ago - 2 comments

#57 - add package dependencies in DESCRIPTION

Pull Request - State: open - Opened by zhanghao-njmu over 2 years ago

#56 - Question about InstallData

Issue - State: open - Opened by jefferyUstc almost 3 years ago

#55 - Error when running Seurat pipeline on a PC

Issue - State: closed - Opened by stacygenovese almost 3 years ago

#54 - can not loaded "SeuratData"

Issue - State: open - Opened by PanSX-Dr almost 3 years ago

#53 - can't load the dataset that has already been installed

Issue - State: open - Opened by wddyzxxx almost 3 years ago - 7 comments

#52 - support for azimuth references

Pull Request - State: closed - Opened by AustinHartman almost 3 years ago

#51 - Image-based analysis functions not found...

Issue - State: open - Opened by SathiyaNManivannan almost 3 years ago

#50 - desc_warning

Pull Request - State: closed - Opened by XikunHan almost 3 years ago

#49 - BUG: SCTransform does not work after rename cells

Issue - State: closed - Opened by duocang almost 3 years ago

#49 - BUG: SCTransform does not work after rename cells

Issue - State: closed - Opened by duocang almost 3 years ago

#47 - Tutorial: "NULL" to "dgMatrix"

Issue - State: closed - Opened by CD-man about 3 years ago - 1 comment
Labels: more-information-needed

#46 - PBMC3K Data Install Problems

Issue - State: closed - Opened by bigtimecodersean about 3 years ago - 4 comments
Labels: more-information-needed

#45 - Remove warning

Pull Request - State: closed - Opened by bbimber about 3 years ago - 3 comments
Labels: bugfix

#45 - Remove warning

Pull Request - State: closed - Opened by bbimber about 3 years ago - 3 comments
Labels: bugfix

#44 - subset pubmc.atac error message using sample data provided by seurat

Issue - State: open - Opened by sunliang3361 about 3 years ago - 2 comments

#43 - LoadData fails for Brain

Issue - State: closed - Opened by MarcElosua about 3 years ago - 1 comment

#42 - Cannot install thp1.eccite.SeuratData

Issue - State: closed - Opened by alexbarrera over 3 years ago - 5 comments

#41 - Warnings

Issue - State: closed - Opened by johnyaku over 3 years ago

#40 - Citation information for panc8 data

Issue - State: open - Opened by cohenp05 over 3 years ago - 2 comments

#39 - VlnPlot shows several perfectly lines of cells.

Issue - State: closed - Opened by levinhein over 3 years ago - 1 comment

#38 - SeuratData won't install datasets

Issue - State: closed - Opened by jmosullivan over 3 years ago - 1 comment

#37 - Request: Examples of Seurat datasets v2 & v4

Issue - State: closed - Opened by evanbiederstedt over 3 years ago - 3 comments

#36 - Seurat vignette mapping and annotating datasets

Issue - State: closed - Opened by ncedi12 almost 4 years ago - 2 comments

#35 - SeuratData won't install any datasets

Issue - State: closed - Opened by gloknar almost 4 years ago - 5 comments

#34 - coercing “NULL” to “dgCMatrix - Error

Issue - State: closed - Opened by khubebsiddiqui almost 4 years ago - 2 comments

#33 - bmcite donor details

Issue - State: open - Opened by ChiaraCaprioli almost 4 years ago - 2 comments

#32 - Failed to install 'SeuratData' from GitHub:

Issue - State: closed - Opened by lihaone about 4 years ago - 2 comments
Labels: more-information-needed

#31 - Full name of the L2 level annotations for the "bmcite" dataset

Issue - State: closed - Opened by luoping1004 about 4 years ago - 1 comment

#30 - pbmcMultiome seurat data not available

Issue - State: closed - Opened by bassanio about 4 years ago - 7 comments
Labels: more-information-needed

#29 - download timeout

Issue - State: closed - Opened by AlgoLab-XJTU about 4 years ago - 2 comments

#28 - cannot access test data of cell-cycle scoring and regressing

Issue - State: closed - Opened by YAOJ-bioin over 4 years ago - 1 comment

#27 - Issue with installation of data from SeuratData.unable to install "pbmc3k.final" datasets

Issue - State: closed - Opened by Aby-GGG over 4 years ago - 3 comments
Labels: more-information-needed

#26 - How to cite the package?

Issue - State: closed - Opened by linanzhang over 4 years ago - 1 comment

#25 - Added closing ) to paragraph #15

Pull Request - State: closed - Opened by kant over 4 years ago - 1 comment

#24 - error with installing spatial ver of Seurat

Issue - State: closed - Opened by wfma over 4 years ago - 1 comment

#22 - Error installing SeuratData: "subscript out of bounds"

Issue - State: open - Opened by Brunox13 almost 5 years ago - 7 comments

#21 - Add support for no "Description" data

Pull Request - State: closed - Opened by kou almost 5 years ago - 2 comments

#20 - ifnb.list

Issue - State: closed - Opened by jajcobyang almost 5 years ago - 1 comment

#19 - Error in installing 'stxBrain' data from the SeuratData

Issue - State: closed - Opened by vHelmholtz about 5 years ago - 5 comments

#18 - Issue with installation of data from SeuratData

Issue - State: closed - Opened by JamesTayCam about 5 years ago - 3 comments

#17 - Failed to install the SeuratData with Devtools

Issue - State: closed - Opened by vHelmholtz about 5 years ago - 1 comment

#16 - Cannot install ifnb dataset - 3.1.0 404 error. Not present.

Issue - State: closed - Opened by kmshort about 5 years ago - 2 comments
Labels: more-information-needed

#15 - Cannot install ifnb dataset

Issue - State: closed - Opened by molecules about 5 years ago - 8 comments

#14 - SeuratData v0.2.1

Pull Request - State: closed - Opened by mojaveazure about 5 years ago

#13 - SeuratData v0.2.0

Pull Request - State: closed - Opened by mojaveazure over 5 years ago

#12 - Error (and possible solution) for installing SeuratData with R 3.4.4

Issue - State: closed - Opened by GiantSpaceRobot over 5 years ago - 7 comments

#11 - large dataset causing "long vectors not supported yet" error

Issue - State: closed - Opened by iiiir over 5 years ago - 1 comment

#10 - hcabm40k metadata

Issue - State: closed - Opened by igordot over 5 years ago - 1 comment

#9 - Can not install!

Issue - State: closed - Opened by lessonskit over 5 years ago - 3 comments

#8 - panc8 data has non-integers, not counts?

Issue - State: closed - Opened by KristianHdL over 5 years ago - 2 comments

#7 - Extend Seurat Data to "Other Data"

Issue - State: open - Opened by GreenGilad over 5 years ago - 4 comments
Labels: enhancement

#6 - [WIP] Allow modular loading of datasets

Pull Request - State: open - Opened by mojaveazure over 5 years ago
Labels: enhancement

#5 - Issue with SeuratData

Issue - State: closed - Opened by garsat over 5 years ago - 15 comments

#4 - Feat/no internet

Pull Request - State: closed - Opened by mojaveazure over 5 years ago
Labels: enhancement

#2 - Better handling of no internet connection

Issue - State: closed - Opened by andrewwbutler over 5 years ago

#1 - Makes repo.use a package option

Pull Request - State: closed - Opened by andrewwbutler over 5 years ago - 1 comment