Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / satijalab/azimuth issues and pull requests

#100 - Retrieving RNA raw counts

Issue - State: closed - Opened by seoyeonoh12 over 2 years ago - 1 comment

#100 - Retrieving RNA raw counts

Issue - State: closed - Opened by seoyeonoh12 over 2 years ago - 1 comment

#99 - Human Bone Marrow Reference

Issue - State: closed - Opened by MjelleLab over 2 years ago - 5 comments

#99 - Human Bone Marrow Reference

Issue - State: closed - Opened by MjelleLab over 2 years ago - 5 comments

#98 - A Seurat object for Azimuth PBMC reference?

Issue - State: closed - Opened by apredeus almost 3 years ago - 3 comments

#98 - A Seurat object for Azimuth PBMC reference?

Issue - State: closed - Opened by apredeus almost 3 years ago - 3 comments

#97 - How to extract the annotated cell type for each cell from Azimuth results

Issue - State: closed - Opened by qicheng-ma almost 3 years ago - 1 comment

#97 - How to extract the annotated cell type for each cell from Azimuth results

Issue - State: closed - Opened by qicheng-ma almost 3 years ago - 1 comment

#96 - Error message in RunUMAP when I run it locally

Issue - State: closed - Opened by qicheng-ma almost 3 years ago - 2 comments

#96 - Error message in RunUMAP when I run it locally

Issue - State: closed - Opened by qicheng-ma almost 3 years ago - 2 comments

#94 - Cross-species mapping

Issue - State: closed - Opened by YahGao almost 3 years ago - 2 comments

#94 - Cross-species mapping

Issue - State: closed - Opened by YahGao almost 3 years ago - 2 comments

#93 - Filtering threshold score

Issue - State: closed - Opened by sgheo almost 3 years ago - 1 comment

#93 - Filtering threshold score

Issue - State: closed - Opened by sgheo almost 3 years ago - 1 comment

#92 - Mapping tumor sample single cells onto the normal based reference

Issue - State: closed - Opened by sgheo almost 3 years ago

#92 - Mapping tumor sample single cells onto the normal based reference

Issue - State: closed - Opened by sgheo almost 3 years ago

#91 - Batch effect correction

Issue - State: closed - Opened by sgheo almost 3 years ago - 2 comments

#91 - Batch effect correction

Issue - State: closed - Opened by sgheo almost 3 years ago - 2 comments

#90 - Deploying strategy

Issue - State: closed - Opened by juechenyang almost 3 years ago - 1 comment

#90 - Deploying strategy

Issue - State: closed - Opened by juechenyang almost 3 years ago - 1 comment

#89 - FindTransferAnchors error in R script

Issue - State: closed - Opened by yannk-lm almost 3 years ago - 1 comment

#89 - FindTransferAnchors error in R script

Issue - State: closed - Opened by yannk-lm almost 3 years ago - 1 comment

#88 - all(dims >= dims.min) is not TRUE

Issue - State: open - Opened by FADHLyemen almost 3 years ago

#88 - all(dims >= dims.min) is not TRUE

Issue - State: open - Opened by FADHLyemen almost 3 years ago

#87 - Does Azimuth App requires internet connect?

Issue - State: closed - Opened by Zepeng-Mu almost 3 years ago - 2 comments

#87 - Does Azimuth App requires internet connect?

Issue - State: closed - Opened by Zepeng-Mu almost 3 years ago - 2 comments

#86 - Conflicting Level1 and Level2 labels

Issue - State: closed - Opened by sinanassiri about 3 years ago - 3 comments

#86 - Conflicting Level1 and Level2 labels

Issue - State: closed - Opened by sinanassiri about 3 years ago - 3 comments

#85 - Big Input file error reading from connection

Issue - State: closed - Opened by juechenyang about 3 years ago - 6 comments

#85 - Big Input file error reading from connection

Issue - State: closed - Opened by juechenyang about 3 years ago - 6 comments

#84 - Cannot map cells to reference for human kidney

Issue - State: closed - Opened by juechenyang about 3 years ago - 3 comments

#84 - Cannot map cells to reference for human kidney

Issue - State: closed - Opened by juechenyang about 3 years ago - 3 comments

#83 - Human Bone Marrow Reference

Issue - State: open - Opened by yasharw about 3 years ago - 2 comments

#83 - Human Bone Marrow Reference

Issue - State: open - Opened by yasharw about 3 years ago - 2 comments

#82 - Reference dataset objects with all genes

Issue - State: closed - Opened by gokceneraslan about 3 years ago - 1 comment

#82 - Reference dataset objects with all genes

Issue - State: closed - Opened by gokceneraslan about 3 years ago - 1 comment

#81 - Human kidney reference

Issue - State: open - Opened by WesDe about 3 years ago

#81 - Human kidney reference

Issue - State: open - Opened by WesDe about 3 years ago

#80 - Cannot add ADT to seurat object

Issue - State: closed - Opened by m0nib about 3 years ago - 1 comment

#80 - Cannot add ADT to seurat object

Issue - State: closed - Opened by m0nib about 3 years ago - 1 comment

#79 - Cannot find directory

Issue - State: open - Opened by m0nib about 3 years ago - 2 comments

#79 - Cannot find directory

Issue - State: open - Opened by m0nib about 3 years ago - 2 comments

#78 - Label my own UMAP with Azimuth?

Issue - State: closed - Opened by algarji about 3 years ago - 3 comments

#78 - Label my own UMAP with Azimuth?

Issue - State: closed - Opened by algarji about 3 years ago - 3 comments

#77 - Azimuth output R code does not give same UMAP plot/values as web app

Issue - State: closed - Opened by jdrnevich about 3 years ago - 1 comment

#77 - Azimuth output R code does not give same UMAP plot/values as web app

Issue - State: closed - Opened by jdrnevich about 3 years ago - 1 comment

#76 - Is there a limit to how many times I can use AZIMUTH WEB?

Issue - State: closed - Opened by levinhein about 3 years ago - 2 comments
Labels: more-information-needed

#76 - Is there a limit to how many times I can use AZIMUTH WEB?

Issue - State: closed - Opened by levinhein about 3 years ago - 2 comments
Labels: more-information-needed

#75 - Version 0.4.3

Pull Request - State: closed - Opened by andrewwbutler about 3 years ago

#75 - Version 0.4.3

Pull Request - State: closed - Opened by andrewwbutler about 3 years ago

#74 - Release 0.4.2

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#74 - Release 0.4.2

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#73 - Release prep for 0.4.2

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#73 - Release prep for 0.4.2

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#72 - Fix windows file path handling

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#72 - Fix windows file path handling

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#71 - Fix issue when query and ref cell names overlap

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#71 - Fix issue when query and ref cell names overlap

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#69 - Error in curl::curl_fetch_memory: Could not resolve host: E

Issue - State: closed - Opened by Totoro-chen over 3 years ago - 4 comments
Labels: more-information-needed

#69 - Error in curl::curl_fetch_memory: Could not resolve host: E

Issue - State: closed - Opened by Totoro-chen over 3 years ago - 4 comments
Labels: more-information-needed

#68 - Error in run Azimuth::AzimuthApp()

Issue - State: closed - Opened by Totoro-chen over 3 years ago - 2 comments
Labels: duplicate

#68 - Error in run Azimuth::AzimuthApp()

Issue - State: closed - Opened by Totoro-chen over 3 years ago - 2 comments
Labels: duplicate

#67 - propagate ndims to template script

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#67 - propagate ndims to template script

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#66 - Human Fetus reference did not work for anchor finding by R script template

Issue - State: closed - Opened by soontide over 3 years ago - 2 comments

#66 - Human Fetus reference did not work for anchor finding by R script template

Issue - State: closed - Opened by soontide over 3 years ago - 2 comments

#65 - provide hosted default homolog file

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#65 - provide hosted default homolog file

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#64 - make demodataset optional again

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#64 - make demodataset optional again

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#63 - Error when running docker container

Issue - State: closed - Opened by doncarlos999 over 3 years ago - 7 comments

#63 - Error when running docker container

Issue - State: closed - Opened by doncarlos999 over 3 years ago - 7 comments

#62 - Release 0.4.1

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#62 - Release 0.4.1

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#61 - do.correct.umi set to FALSE by default

Issue - State: closed - Opened by sinanassiri over 3 years ago - 1 comment

#61 - do.correct.umi set to FALSE by default

Issue - State: closed - Opened by sinanassiri over 3 years ago - 1 comment

#60 - forwarding weblink on http://azimuth.satijalab.org/app/azimuth incorct

Issue - State: closed - Opened by ergonyc over 3 years ago - 1 comment

#60 - forwarding weblink on http://azimuth.satijalab.org/app/azimuth incorct

Issue - State: closed - Opened by ergonyc over 3 years ago - 1 comment

#59 - Release 0.4.0

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#59 - Release 0.4.0

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#58 - New options/features for 0.4.0

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#58 - New options/features for 0.4.0

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#57 - Download All Results in Azimuth

Pull Request - State: closed - Opened by jaisonj708 over 3 years ago

#57 - Download All Results in Azimuth

Pull Request - State: closed - Opened by jaisonj708 over 3 years ago

#56 - What happens to data uploaded to Azimuth

Issue - State: closed - Opened by SirKuikka over 3 years ago - 1 comment

#56 - What happens to data uploaded to Azimuth

Issue - State: closed - Opened by SirKuikka over 3 years ago - 1 comment

#55 - Deploying to the web

Issue - State: closed - Opened by bloughstephen over 3 years ago - 1 comment

#54 - Patch release 0.3.2

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#54 - Patch release 0.3.2

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago

#53 - ensure clustering in ClusterPreservationScore is based on snn

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#53 - ensure clustering in ClusterPreservationScore is based on snn

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#52 - fixes to template script, add exports

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#52 - fixes to template script, add exports

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#51 - Prevent error when no demo dataset is provided

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#51 - Prevent error when no demo dataset is provided

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix

#50 - Improve filtering of query data

Pull Request - State: closed - Opened by andrewwbutler over 3 years ago
Labels: bugfix