sanger-pathogens/Bio-Tradis issues and pull requests

#132 - how is the insertion index calculated?

Issue - State: open - Opened by mpapange over 1 year ago - 6 comments

#131 - EdgeR not working with new R version?

Issue - State: open - Opened by iawarner over 1 year ago

#130 - Issues on running BioTraDIS on multiple contigs

Issue - State: open - Opened by Madhuskey1993 about 2 years ago - 1 comment

#129 - Essentiality function not working

Issue - State: open - Opened by sbastkowski about 3 years ago - 1 comment

#128 - Unable to install biotradis

Issue - State: open - Opened by voonkit about 3 years ago

#127 - -mm paramater not working as expected

Issue - State: open - Opened by martinclott almost 4 years ago - 1 comment

#126 - Update README.md

Pull Request - State: closed - Opened by doomedramen almost 4 years ago

#125 - tradis_comparison issue

Issue - State: open - Opened by pmireland about 4 years ago - 3 comments

#124 - tradis_essentiality.R output a file containing change points?

Issue - State: open - Opened by BenjaminJPerry over 4 years ago

#123 - Problem with insertion plots (files longer than they should be)

Issue - State: open - Opened by irilenia over 4 years ago - 9 comments

#122 - need to update read end for soft-clipping as well

Pull Request - State: closed - Opened by lbarquist over 4 years ago

#121 - fixed bug in handling soft clipping at read start, updated tutorial

Pull Request - State: closed - Opened by lbarquist over 4 years ago

#120 - Possible issue with calculation of read start and ends in module Cigar.pm

Issue - State: closed - Opened by irilenia over 4 years ago - 2 comments

#119 - ftp download link in biotradistutorial.pdf no longer exists

Issue - State: open - Opened by adamdoescode almost 5 years ago

#118 - add locales to Dockerfile

Pull Request - State: closed - Opened by puethe almost 5 years ago

#117 - Essentiality analysis code

Issue - State: closed - Opened by apredeus about 5 years ago - 4 comments

#116 - test failures with samtools v1.10

Issue - State: open - Opened by mr-c about 5 years ago - 1 comment

#115 - Update README.md

Pull Request - State: closed - Opened by thanhleviet about 5 years ago

#114 - Remove hardcoded path

Pull Request - State: closed - Opened by thanhleviet about 5 years ago

#113 - Update bacteria_tradis

Pull Request - State: closed - Opened by thanhleviet about 5 years ago

#112 - Fix for libraries in installation and update of conda installation command

Pull Request - State: closed - Opened by sbastkowski about 5 years ago

#111 - Removed '--force' for [@Starter]

Pull Request - State: closed - Opened by telatin over 5 years ago

#110 - installing biotradis on MacOS

Issue - State: closed - Opened by angelovangel over 5 years ago - 4 comments

#109 - Update TravisCI tests using Docker

Pull Request - State: closed - Opened by telatin over 5 years ago - 1 comment

#108 - Fixed relative path to ./lib problem in binaries using FindBin

Pull Request - State: closed - Opened by telatin over 5 years ago

#107 - Add relative path to ./lib via FindBin

Pull Request - State: closed - Opened by telatin over 5 years ago

#106 - Add relative path to ./lib via FindBin

Pull Request - State: closed - Opened by telatin over 5 years ago

#105 - Add relative path to lib/ via FindBin

Pull Request - State: closed - Opened by telatin over 5 years ago

#104 - Add relative path to ./lib via FindBin

Pull Request - State: closed - Opened by telatin over 5 years ago

#103 - Add relative path to ./lib via FindBin

Pull Request - State: closed - Opened by telatin over 5 years ago

#102 - Fix missing library

Pull Request - State: closed - Opened by telatin over 5 years ago

#101 - Add conda badge to README

Pull Request - State: closed - Opened by ssjunnebo almost 6 years ago

#100 - How to deal with biological replicates - tradis_essentiality.R

Issue - State: closed - Opened by subwaystation almost 6 years ago - 4 comments

#99 - Update README.md

Pull Request - State: closed - Opened by thanhleviet almost 6 years ago

#98 - Added changelog

Pull Request - State: closed - Opened by ssjunnebo about 6 years ago