Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / sanger-pathogens/Bio-AutomatedAnnotation issues and pull requests

#55 - Replace paths to prokka db

Pull Request - State: closed - Opened by Lfulcrum over 1 year ago

#54 - Added changelog

Pull Request - State: closed - Opened by ssjunnebo almost 6 years ago

#53 - Now set up with bioconda

Pull Request - State: closed - Opened by ssjunnebo about 6 years ago

#52 - Add PkgVersion

Pull Request - State: closed - Opened by ssjunnebo about 6 years ago

#51 - Auto generate META.json using [MetaJSON].

Pull Request - State: closed - Opened by manwar about 6 years ago

#50 - Updated readme

Pull Request - State: closed - Opened by ssjunnebo about 6 years ago

#49 - remove version nr, autoversion instead

Pull Request - State: closed - Opened by ssjunnebo almost 7 years ago

#48 - Add version number

Pull Request - State: closed - Opened by ssjunnebo almost 7 years ago

#47 - infgen

Pull Request - State: closed - Opened by andrewjpage almost 8 years ago

#46 - change from 108 to 118

Pull Request - State: closed - Opened by andrewjpage almost 8 years ago

#45 - fix hmmer url

Pull Request - State: closed - Opened by vaofford about 8 years ago

#44 - output directory parameter

Pull Request - State: closed - Opened by andrewjpage over 8 years ago

#43 - Removed cc21

Pull Request - State: closed - Opened by aslett1 over 9 years ago

#42 - Add TravisCI support

Pull Request - State: closed - Opened by bewt85 over 9 years ago

#41 - typo

Pull Request - State: closed - Opened by andrewjpage about 10 years ago

#40 - keep original order of contigs and sequence names

Pull Request - State: closed - Opened by andrewjpage about 10 years ago

#39 - add paper to usage

Pull Request - State: closed - Opened by andrewjpage about 10 years ago

#38 - expose the translation code option

Pull Request - State: closed - Opened by andrewjpage about 10 years ago

#37 - Added AUTHORS file

Pull Request - State: closed - Opened by aslett1 about 10 years ago

#36 - Added README

Pull Request - State: closed - Opened by aslett1 about 10 years ago

#35 - Slight change to how products are searched

Pull Request - State: closed - Opened by carlacummins over 10 years ago

#34 - specify version for Bio::SearchIO

Pull Request - State: closed - Opened by andrewjpage almost 11 years ago

#33 - output base name for genes

Pull Request - State: closed - Opened by andrewjpage about 11 years ago

#32 - allow for multiple processors to be used in annotate bacteria

Pull Request - State: closed - Opened by andrewjpage about 11 years ago

#31 - update usage text for annotate_bacteria

Pull Request - State: closed - Opened by andrewjpage about 11 years ago

#30 - set default dbdir

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#29 - Move IPRscan wrapper to separate repo

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#28 - initial eukaryote annotation functionality

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#27 - renamed LICENSE

Pull Request - State: closed - Opened by CraigPorter over 11 years ago

#26 - GPL

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#25 - Allow for kingdom to be passed in

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#24 - sort the genes by number found

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#23 - make script executable

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#22 - script to output a spreadsheet of gene occurances

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#21 - add script to extract genes from gffs

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#20 - number of features in cmscan obj

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#19 - calc files with and without hits

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#18 - use cmobj

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#17 - move cmscan to class and test

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#16 - allow qualifiers to be chosen

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#15 - fasta file of extracted genes

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#14 - take sequence id from infernal results

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#13 - fix infernal coord system

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#12 - exclude aragorn end tag

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#11 - enable rfam by default

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#10 - limit to 1 cpu for pipeline

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#9 - dont over write with blank gene name

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#8 - dont overwrite gene name if its set

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#7 - allow genus to be passed into cmd

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#6 - Create seq files once

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#5 - temp directory type

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#4 - uniq temp directory

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#3 - genus

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#2 - use time as object not string

Pull Request - State: closed - Opened by andrewjpage over 11 years ago

#1 - Basic wrappers

Pull Request - State: closed - Opened by andrewjpage over 11 years ago