Ecosyste.ms: Issues

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GitHub / sanderlab/tumorcomparer issues and pull requests

#44 - Joyplot Error with Example Data

Issue - State: closed - Opened by cannin over 2 years ago
Labels: bug

#43 - Deploy Updated Site

Issue - State: open - Opened by cannin over 3 years ago
Labels: enhancement

#42 - Add oncoprint visualization

Issue - State: open - Opened by cannin over 3 years ago
Labels: enhancement

#41 - updated data.table filtering syntax

Pull Request - State: closed - Opened by hakobyansiras over 3 years ago

#40 - Fix no visible binding for global variable issue

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: bug

#39 - Updated unit tests, made minor revisions

Pull Request - State: closed - Opened by hakobyansiras over 3 years ago

#38 - GitHub Pages Broken?

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: bug, question

#37 - Fix Undefined global functions for external functions

Issue - State: closed - Opened by cannin over 3 years ago
Labels: bug

#36 - Capitalize "Select distance matrix" to "Select Distance Matrix"

Issue - State: closed - Opened by cannin over 3 years ago
Labels: bug

#35 - Updated unit tests, added documentation

Pull Request - State: closed - Opened by hakobyansiras over 3 years ago

#34 - Minor Edits to Shiny App

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: bug

#32 - Rename LICENSE.md to LICENSE

Issue - State: closed - Opened by cannin over 3 years ago
Labels: bug

#31 - Move LIHC_data.zip from root to inst/extdata

Issue - State: closed - Opened by cannin over 3 years ago
Labels: bug

#30 - Fix expect_equal(TRUE, TRUE) Tests

Issue - State: closed - Opened by cannin over 3 years ago
Labels: bug

#29 - Final pull request for GSOC 2021 project updates

Pull Request - State: closed - Opened by hakobyansiras over 3 years ago

#29 - Final pull request for GSOC 2021 project updates

Pull Request - State: closed - Opened by hakobyansiras over 3 years ago

#27 - What to fix in specified places?

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 2 comments
Labels: question

#26 - GitHub actions Error for windows check

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 2 comments
Labels: question

#25 - Igrah layout integration into cyjShiny netowrk

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 7 comments
Labels: question

#24 - Do we consider the run_comparison function as a gene centered?

Issue - State: open - Opened by hakobyansiras over 3 years ago - 3 comments
Labels: question

#23 - test_tumorcomparer error after patch update

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 1 comment

#22 - Add Labels to Network View in Shiny

Issue - State: closed - Opened by cannin over 3 years ago - 3 comments
Labels: enhancement

#21 - NaN values in geneset comparisons

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 1 comment

#20 - How to report results with datasets with different gene numbers?

Issue - State: open - Opened by cannin over 3 years ago - 1 comment

#19 - How mtc_dataset is generated?

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 2 comments
Labels: question

#18 - Comparison function error with LIHC cancer type in TGF-Beta pathway

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 1 comment
Labels: bug

#17 - Add Test that Triggers to Few Genes in Comparison

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: enhancement

#16 - Datatypes with zero values in precomputed comparisons

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 1 comment
Labels: question

#15 - Geneset filtering issue

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 4 comments
Labels: question

#14 - Integrate Gene Set Analysis into Shiny App

Issue - State: closed - Opened by cannin over 3 years ago - 6 comments
Labels: enhancement

#14 - Integrate Gene Set Analysis into Shiny App

Issue - State: closed - Opened by cannin over 3 years ago - 6 comments
Labels: enhancement

#13 - Testing Geneset Specific Function

Issue - State: closed - Opened by cannin over 3 years ago - 3 comments
Labels: question

#13 - Testing Geneset Specific Function

Issue - State: closed - Opened by cannin over 3 years ago - 3 comments
Labels: question

#12 - Mutual Data Availability in Pan-Cancer Dataset

Issue - State: closed - Opened by cannin over 3 years ago - 2 comments
Labels: question

#11 - TumorComparer on Gene Subsets

Issue - State: closed - Opened by cannin over 3 years ago - 8 comments
Labels: enhancement

#10 - Make a test for 5 data types

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: enhancement

#9 - Add Documentation to run_comparison_config_list

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: documentation

#8 - Misspelling in Code

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: bug

#7 - run_comparison_two_datasets test is disabled in test_tumorcomparer.R

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 1 comment
Labels: bug

#6 - Generalize run_comparison.R Code

Issue - State: closed - Opened by cannin over 3 years ago - 1 comment
Labels: enhancement

#5 - Package build warnings

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 2 comments
Labels: bug

#4 - test_tumorcomparer.R Error: no lines available in input

Issue - State: closed - Opened by hakobyansiras over 3 years ago - 3 comments
Labels: bug

#3 - Set up GitHub Actions

Issue - State: closed - Opened by cannin over 3 years ago
Labels: enhancement

#2 - Fix Downloader in Shiny App

Issue - State: closed - Opened by cannin over 3 years ago
Labels: bug

#1 - fixed faulty downloader in server.R

Pull Request - State: closed - Opened by hakobyansiras almost 4 years ago