Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / sanderlab/scPerturb issues and pull requests

#28 - edist calculation difference in edist and etest

Issue - State: open - Opened by rootze about 1 month ago

#27 - Error in .var for SrivatsanTrapnell2020_sciplex3.h5ad

Issue - State: closed - Opened by nrosed 3 months ago - 1 comment

#26 - website out of date

Issue - State: open - Opened by tessadgreen 4 months ago - 1 comment

#25 - failure to reproduce significant perturbations in Norman et al.

Issue - State: open - Opened by wconnell 5 months ago - 1 comment

#24 - Pre-Processing File for Norman et al.

Issue - State: closed - Opened by Hanxi-002 6 months ago - 1 comment

#23 - JoungZhang2023 Controls

Issue - State: closed - Opened by FarzanT 6 months ago - 1 comment

#22 - Difference between ncounts, read count, and UMI count

Issue - State: closed - Opened by zhan8855 6 months ago - 1 comment

#20 - Datasets deleted & Number of Cells missing

Issue - State: closed - Opened by ArturDev42 9 months ago - 2 comments

#19 - UI improvements

Issue - State: open - Opened by stefanpeidli 10 months ago
Labels: documentation, python package

#18 - TypeError: edist() got an unexpected keyword argument 'control'

Issue - State: closed - Opened by mksingh2104 10 months ago - 1 comment

#17 - Improve warning message if only one cell is perturbed in scperturbR

Issue - State: open - Opened by stefanpeidli 10 months ago
Labels: documentation, enhancement, R package

#16 - Add ZapateroTape2023

Issue - State: open - Opened by stefanpeidli 11 months ago
Labels: enhancement, database

#15 - Add HeinWeissman2021

Issue - State: open - Opened by stefanpeidli 11 months ago
Labels: enhancement, database

#14 - Add ZapateroTape2023

Issue - State: open - Opened by stefanpeidli 11 months ago
Labels: enhancement, database

#13 - Make E-test handle dicts and lists for control group

Issue - State: closed - Opened by stefanpeidli 11 months ago - 1 comment
Labels: enhancement, python package

#12 - Parallelize e-dist calculation

Issue - State: closed - Opened by stefanpeidli 11 months ago - 1 comment
Labels: enhancement, python package

#11 - Missing Data in AissaBenevolenskaya2021 Dataset

Issue - State: closed - Opened by lynn-1998 11 months ago - 1 comment
Labels: bug, database

#10 - Docstring is incorrect: says edist parameter sample_correct is default True

Issue - State: closed - Opened by deto 11 months ago - 1 comment
Labels: documentation, python package

#9 - Prepare for upcoming Seurat v5 release

Issue - State: closed - Opened by Gesmira about 1 year ago
Labels: enhancement, database

#8 - Add scatac processing scripts

Pull Request - State: closed - Opened by GrossTor about 1 year ago

#8 - Add scatac processing scripts

Pull Request - State: closed - Opened by GrossTor about 1 year ago

#7 - Incorrect gene.annotation processing for sciPlex3

Issue - State: closed - Opened by FarzanT over 1 year ago - 1 comment
Labels: bug, database

#6 - Wrong 'perturbation' tag of data

Issue - State: closed - Opened by siduanmiao about 2 years ago - 1 comment
Labels: bug, database

#5 - Missing data of specific dataset

Issue - State: closed - Opened by siduanmiao about 2 years ago - 1 comment
Labels: bug, database

#4 - suggestion: provide a function for calculating E-distance

Issue - State: closed - Opened by AstreChen about 2 years ago - 2 comments

#3 - Missing source code for data processing

Issue - State: closed - Opened by ececillie about 2 years ago - 2 comments

#2 - https://www.scperturb.org/datasets throws "Couldn't fetch datasets."

Issue - State: closed - Opened by kaiu85 about 2 years ago - 4 comments

#1 - scATAC datasets not downloading

Issue - State: closed - Opened by tessadgreen over 2 years ago - 1 comment