sanderlab/cellbox issues and pull requests

#59 - Describe sparse_data Option

Issue - State: open - Opened by cannin over 1 year ago
Labels: documentation

#58 - Cell Viability (and Other Activity Node) Values

Issue - State: open - Opened by cannin over 1 year ago
Labels: question

#57 - Transformation for Perturbation Strengths

Issue - State: open - Opened by cannin over 1 year ago
Labels: question

#56 - Numerical instability between Tensorflow and Pytorch

Issue - State: open - Opened by Mustardburger over 1 year ago - 2 comments
Labels: bug

#55 - Best practices for using CellBox on different datasets

Issue - State: open - Opened by Mustardburger over 1 year ago - 1 comment
Labels: help wanted

#54 - Questions about train.py

Issue - State: open - Opened by Mustardburger over 1 year ago - 5 comments
Labels: help wanted

#53 - 51 update cellbox readme

Pull Request - State: closed - Opened by Mustardburger over 1 year ago

#52 - Explain the format of the expr_index.txt in the README

Issue - State: open - Opened by cannin over 1 year ago
Labels: documentation

#51 - Update CellBox README

Issue - State: closed - Opened by Mustardburger over 1 year ago - 4 comments
Labels: documentation

#50 - self.train_y0 not found when setting model to LinReg

Issue - State: open - Opened by Mustardburger over 1 year ago
Labels: bug

#50 - self.train_y0 not found when setting model to LinReg

Issue - State: open - Opened by Mustardburger over 1 year ago
Labels: bug

#49 - Add pytorch dataloader test

Pull Request - State: closed - Opened by Mustardburger over 1 year ago

#49 - Add pytorch dataloader test

Pull Request - State: closed - Opened by Mustardburger over 1 year ago

#48 - Inconsistent drug indexing in loo_label.csv, expr_index.txt, and --drug_index argument

Issue - State: open - Opened by Mustardburger over 1 year ago
Labels: help wanted

#48 - Inconsistent drug indexing in loo_label.csv, expr_index.txt, and --drug_index argument

Issue - State: open - Opened by Mustardburger over 1 year ago
Labels: help wanted

#47 - Add function docstrings

Pull Request - State: closed - Opened by DesmondYuan over 1 year ago
Labels: documentation

#47 - Add function docstrings

Pull Request - State: closed - Opened by DesmondYuan over 1 year ago
Labels: documentation

#46 - Rewrite kernel.py in Pytorch and Add Tests

Issue - State: open - Opened by cannin over 1 year ago
Labels: enhancement

#46 - Rewrite kernel.py in Pytorch and Add Tests

Issue - State: open - Opened by cannin over 1 year ago
Labels: enhancement

#45 - Add Tests for Dataset Partitioning Code

Issue - State: open - Opened by cannin over 1 year ago
Labels: enhancement

#45 - Add Tests for Dataset Partitioning Code

Issue - State: open - Opened by cannin over 1 year ago
Labels: enhancement

#44 - Give Better Documentation for Testing

Issue - State: open - Opened by cannin over 1 year ago
Labels: enhancement

#44 - Give Better Documentation for Testing

Issue - State: open - Opened by cannin over 1 year ago
Labels: enhancement

#43 - Add Function Documentation

Issue - State: closed - Opened by cannin over 1 year ago - 2 comments
Labels: documentation

#43 - Add Function Documentation

Issue - State: closed - Opened by cannin over 1 year ago - 2 comments
Labels: documentation

#42 - Bump tensorflow from 2.11.0 to 2.11.1 in /cellbox

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#42 - Bump tensorflow from 2.11.0 to 2.11.1 in /cellbox

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#41 - Tf2 Refactor

Pull Request - State: closed - Opened by cannin almost 2 years ago

#41 - Tf2 Refactor

Pull Request - State: closed - Opened by cannin almost 2 years ago

#40 - pip install seems broken

Issue - State: closed - Opened by Teculos about 2 years ago - 3 comments

#40 - pip install seems broken

Issue - State: closed - Opened by Teculos about 2 years ago - 3 comments

#39 - Bump tensorflow from 1.15.0 to 2.9.3 in /cellbox

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#39 - Bump tensorflow from 1.15.0 to 2.9.3 in /cellbox

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies